IslandPath Analysis: Escherichia coli str. K12 substr. DH10B



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 51.13   STD DEV: 4.76
Escherichia coli str. K-12 substr. DH10B, complete genome - 1..4686137
4126 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
2960	 57.21	+1	3327432..3329450	+	672	170082623	fadH	ECDH10B_3256	-	2,4-dienoyl-CoA reductase, NADH and FMN-linked
2961	 48.44	0	3329495..3329911	-	138	170082624	ygjM	ECDH10B_3257	-	DNA-binding transcriptional regulator
2962	 38.41	-2	3329908..3330222	-	104	170082625	ygjN	ECDH10B_3258	-	hypothetical protein
2963	 53.83	0	3330506..3331642	-	378	170082626	ygjO	ECDH10B_3259	-	methyltransferase small subunit
2964	 50.79	0	3331727..3332230	+	167	170082627	ygjP	ECDH10B_3260	-	metal dependent hydrolase
2965	 51.52	0	3332307..3332999	+	230	170082628	ygjQ	ECDH10B_3261	-	thioredoxin-like protein
2966	 52.54	0	3333060..3334064	+	334	170082629	ygjR	ECDH10B_3262	-	NAD(P)-binding dehydrogenase
2967	 54.04	0	3334347..3335312	+	321	170082630	alx	ECDH10B_3264	-	inner membrane protein, part of terminus
2968	 55.18	0	3335711..3336955	+	414	170082631	sstT	ECDH10B_3265	-	sodium:serine/threonine symporter
2969	 49.64	0	3336960..3337511	-	183	170082632	ygjV	ECDH10B_3266	-	inner membrane protein
2970	 53.70	0	3337594..3339081	-	495	170082633	uxaA	ECDH10B_3267	-	altronate hydrolase
2971	 54.28	0	3339096..3340508	-	470	170082634	uxaC	ECDH10B_3268	-	uronate isomerase
2972	 54.26	0	3340871..3342289	+	472	170082635	exuT	ECDH10B_3269	-	hexuronate transporter
2973	 50.58	0	3342419..3343195	+	258	170082636	exuR	ECDH10B_3270	-	DNA-binding transcriptional repressor
2974	 50.68	0	3343540..3344202	+	220	170082637	yqjA	ECDH10B_3271	-	inner membrane protein
2975	 53.91	0	3344206..3344589	+	127	170082638	yqjB	ECDH10B_3272	-	hypothetical protein
2976	 48.78	0	3344736..3345104	+	122	170082639	yqjC	ECDH10B_3273	-	hypothetical protein
2977	 54.90	0	3345142..3345447	+	101	170082640	yqjD	ECDH10B_3274	-	hypothetical protein
2978	 52.84	0	3345450..3345854	+	134	170082641	yqjE	ECDH10B_3275	-	inner membrane protein
2979	 56.67	+1	3345844..3346143	+	99	170082642	yqjK	ECDH10B_3276	-	hypothetical protein
2980	 48.85	0	3346329..3346721	+	130	170082643	yqjF	ECDH10B_3277	-	quinol oxidase subunit
2981	 51.17	0	3346791..3347777	+	328	170082644	yqjG	ECDH10B_3278	-	S-transferase
2982	 51.91	0	3348071..3348436	+	121	170082645	yhaH	ECDH10B_3279	-	inner membrane protein
2983	 44.82	-1	3348678..3349034	+	118	170082646	yhaI	ECDH10B_3280	-	inner membrane protein
2984	 55.30	0	3349085..3349981	-	298	170082647	yhaJ	ECDH10B_3281	-	DNA-binding transcriptional regulator
2985	 53.42	0	3350086..3350787	+	233	170082648	yhaK	ECDH10B_3282	-	pirin-related protein
2986	 52.12	0	3350810..3350974	+	54	170082649	yhaL	ECDH10B_3283	-	hypothetical protein
2987	 56.90	+1	3351108..3352418	-	436	170082650	yhaM	ECDH10B_3284	-	hypothetical protein
2988	 50.35	0	3352446..3353714	-	422	170082651	yhaO	ECDH10B_3285	-	transporter
2989	 53.41	0	3354052..3355416	-	454	170082652	tdcG	ECDH10B_3286	-	L-serine dehydratase 3
2990	 52.56	0	3355488..3355877	-	129	170082653	tdcF	ECDH10B_3287	-	L-PSP (mRNA) endoribonuclease
2991	 53.12	0	3355891..3358185	-	764	170082654	tdcE	ECDH10B_3288	-	pyruvate formate-lyase 4/2-ketobutyrate formate-lyase
2992	 48.16	0	3358219..3359439	-	406	170082655	tdcD	ECDH10B_3289	-	propionate kinase/acetate kinase C, anaerobic
2993	 49.85	0	3359453..3360784	-	443	170082656	tdcC	ECDH10B_3290	-	L-threonine/L-serine transporter
2994	 46.36	-1	3360806..3361795	-	329	170082657	tdcB	ECDH10B_3291	-	catabolic threonine dehydratase, PLP-dependent
2995	 42.17	-1	3361894..3362832	-	312	170082658	tdcA	ECDH10B_3292	-	DNA-binding transcriptional activator
2996	 28.77	-2	3363147..3363365	+	72	170082659	tdcR	ECDH10B_3293	-	DNA-binding transcriptional activator
2997	 35.56	-2	3363621..3364160	+	179	170082660	yhaB	ECDH10B_3294	-	hypothetical protein
2998	 31.82	-2	3364182..3365369	+	395	170082661	yhaC	ECDH10B_3295	-	hypothetical protein
2999	 53.87	0	3366392..3367618	-	408	170082662	garK	ECDH10B_3297	-	glycerate kinase I
3000	 52.86	0	3367634..3368524	-	296	170082663	garR	ECDH10B_3298	-	tartronate semialdehyde reductase
3001	 52.92	0	3368554..3369324	-	256	170082664	garL	ECDH10B_3299	-	alpha-dehydro-beta-deoxy-D-glucarate aldolase
3002	 51.31	0	3369340..3370674	-	444	170082665	garP	ECDH10B_3300	-	(D)-galactarate transporter
3003	 52.86	0	3371049..3372620	+	523	170082666	garD	ECDH10B_3301	-	(D)-galactarate dehydrogenase
3004	 47.62	0	3372769..3373104	+	111	170082667	sohA	ECDH10B_3302	-	regulator
3005	 43.87	-1	3373104..3373568	+	154	170082668	yhaV	ECDH10B_3303	-	hypothetical protein
3006	 52.22	0	3373623..3374432	-	269	170082669	agaR	ECDH10B_3304	-	DNA-binding transcriptional dual regulator
3007	 55.27	0	3374681..3375961	+	426	170082670	kbaZ	ECDH10B_3305	-	tagatose 6-phosphate aldolase 1, kbaZ subunit
3008	 50.63	0	3375984..3376457	+	157	170082671	agaV	ECDH10B_3306	-	N-acetylgalactosamine-specific enzyme IIB component of PTS
3009	 56.94	+1	3376889..3377392	+	167	170082672	agaA	ECDH10B_3308	-	hypothetical protein
3010	 56.62	+1	3377743..3378897	+	384	170082673	agaS	ECDH10B_3309	-	tagatose-6-phosphate ketose/aldose isomerase
3011	 52.03	0	3378910..3379770	+	286	170082674	kbaY	ECDH10B_3310	-	tagatose 6-phosphate aldolase 1, kbaY subunit
3012	 44.03	-1	3379937..3380413	+	158	170082675	agaB	ECDH10B_3311	-	N-acetylgalactosamine-specific enzyme IIB component of PTS
3013	 51.37	0	3380452..3381255	+	267	170082676	agaC	ECDH10B_3312	-	N-acetylgalactosamine-specific enzyme IIC component of PTS
3014	 49.37	0	3381245..3382036	+	263	170082677	agaD	ECDH10B_3313	-	N-acetylgalactosamine-specific enzyme IID component of PTS
3015	 50.26	0	3382037..3382792	+	251	170082678	agaI	ECDH10B_3314	-	galactosamine-6-phosphate isomerase
3016	 45.13	-1	3383193..3383777	+	194	170082679	yraH	ECDH10B_3315	-	fimbrial-like adhesin protein
3017	 44.25	-1	3383857..3384552	+	231	170082680	yraI	ECDH10B_3316	-	periplasmic pilin chaperone
3018	 47.60	0	3384581..3387097	+	838	170082681	yraJ	ECDH10B_3317	-	outer membrane protein
3019	 47.89	0	3387108..3388199	+	363	170082682	yraK	ECDH10B_3318	-	fimbrial-like adhesin protein
3020	 54.59	0	3388242..3389102	-	286	170082683	yraL	ECDH10B_3319	-	methyltransferase
3021	 54.05	0	3389167..3391203	+	678	170082684	yraM	ECDH10B_3320	-	hypothetical protein
3022	 54.55	0	3391161..3391556	+	131	170082685	yraN	ECDH10B_3321	-	hypothetical protein
3023	 50.25	0	3391576..3392166	+	196	170082686	diaA	ECDH10B_3322	-	DnaA initiator-associating factor
3024	 54.34	0	3392176..3392751	+	191	170082687	yraP	ECDH10B_3323	-	hypothetical protein
3025	 57.73	+1	3392865..3393905	-	346	170082688	yraQ	ECDH10B_3324	-	permease
3026	 54.87	0	3393978..3394613	-	211	170082689	yraR	ECDH10B_3325	-	nucleoside-diphosphate-sugar epimerase
3027	 50.29	0	3394741..3395259	+	172	170082690	yhbO	ECDH10B_3326	-	intracellular protease
3028	 53.83	0	3395239..3395682	-	147	170082691	yhbP	ECDH10B_3327	-	hypothetical protein
3029	 54.46	0	3395733..3396035	+	100	170082692	yhbQ	ECDH10B_3328	-	endonuclease
3030	 55.56	0	3396022..3396525	-	167	170082693	yhbS	ECDH10B_3329	-	acyltransferase
3031	 51.81	0	3396519..3397043	-	174	170082694	yhbT	ECDH10B_3330	-	lipid carrier protein
3032	 56.83	+1	3397252..3398247	+	331	170082695	yhbU	ECDH10B_3331	-	peptidase (collagenase-like)
3033	 55.97	+1	3398256..3399134	+	292	170082696	yhbV	ECDH10B_3332	-	protease
3034	 55.85	0	3399215..3400222	+	335	170082697	yhbW	ECDH10B_3333	-	hypothetical protein
3035	 53.09	0	3400340..3401584	-	414	170082698	mtr	ECDH10B_3334	-	tryptophan transporter of high affinity
3036	 55.56	0	3401738..3403627	-	629	170082699	deaD	ECDH10B_3335	-	ATP-dependent RNA helicase
3037	 48.25	0	3403807..3404691	-	294	170082700	nlpI	ECDH10B_3336	-	hypothetical protein
3038	 53.70	0	3404800..3407004	-	734	170082701	pnp	ECDH10B_3337	-	polynucleotide phosphorylase/polyadenylase
3039	 51.85	0	3407182..3407451	-	89	170082702	rpsO	ECDH10B_3339	-	30S ribosomal subunit protein S15
3040	 52.49	0	3407600..3408544	-	314	170082703	truB	ECDH10B_3340	-	tRNA U55 pseudouridine synthase
3041	 52.99	0	3408544..3408945	-	133	170082704	rbfA	ECDH10B_3341	-	30s ribosome binding factor
3042	 53.42	0	3409109..3411781	-	890	170082705	infB	ECDH10B_3342	-	fused protein chain initiation factor 2, IF2: membrane protein; protein
3043	 52.76	0	3411806..3413293	-	495	170082706	nusA	ECDH10B_3343	-	transcription termination/antitermination L factor
3044	 48.57	0	3413321..3413773	-	150	170082707	yhbC	ECDH10B_3344	-	hypothetical protein
3045	 52.60	0	3414404..3415747	+	447	170082708	argG	ECDH10B_3346	-	argininosuccinate synthetase
3046	 43.05	-1	3415755..3417380	-	541	170082709	yhbX	ECDH10B_3347	-	hydrolase, inner membrane
3047	 49.55	0	3417940..3418272	-	110	170082710	secG	ECDH10B_3349	-	preprotein translocase membrane subunit
3048	 54.41	0	3418500..3419837	-	445	170082711	glmM	ECDH10B_3350	-	phosphoglucosamine mutase
3049	 51.59	0	3419830..3420678	-	282	170082712	folP	ECDH10B_3351	-	7,8-dihydropteroate synthase
3050	 53.59	0	3420768..3422702	-	644	170082713	ftsH	ECDH10B_3352	-	subunit of integral membrane ATP-dependent zinc metallopeptidase
3051	 50.48	0	3422802..3423431	-	209	170082714	rrmJ	ECDH10B_3353	-	23S rRNA methyltransferase
3052	 48.64	0	3423557..3423850	+	97	170082715	yhbY	ECDH10B_3354	-	RNA-binding protein
3053	 48.43	0	3424006..3424482	-	158	170082716	greA	ECDH10B_3355	-	transcription elongation factor
3054	 53.14	0	3424730..3426163	+	477