IslandPathversion 1.0

IslandPath Analysis: Corynebacterium diphtheriae NCTC 13129



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 53.75 STD DEV: 4.64
Corynebacterium diphtheriae NCTC 13129, complete genome - 1..2488635
2272 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
911	 51.56	0	929413..930339	+	308	38233553	-	DIP0957	-	putative peptide transport system membrane protein
912	 55.14	0	930332..931285	+	317	38233554	-	DIP0958	-	putative peptide transport system membrane protein
913	 54.55	0	931288..932970	+	560	38233555	-	DIP0959	-	putative peptide ABC transport system ATP-binding protein
914	 45.21	-1	933397..933699	+	100	38233556	-	DIP0960	-	hypothetical protein
915	 45.26	-1	933702..934397	+	231	38233557	-	DIP0961	-	ABC transporter ATP-binding protein
916	 46.39	-1	934399..935547	+	382	38233558	-	DIP0962	-	hypothetical protein
917	 39.80	-2	935552..936139	+	195	38233559	-	DIP0963	-	hypothetical protein
918	 63.37	+2	937248..937976	-	242	38233560	-	DIP0964	-	putative protease
919	 56.23	0	937977..938321	-	114	38233561	arsC	DIP0965	-	arsenate reductase
920	 55.81	0	938318..938851	-	177	38233562	-	DIP0966	-	hypothetical protein
921	 59.68	+1	938855..939541	-	228	38233563	-	DIP0967	-	hypothetical protein
922	 57.09	0	939899..941809	+	636	38233564	-	DIP0969	-	putative GTP-binding elongation factor
923	 54.64	0	941820..943349	+	509	38233565	-	DIP0970	-	hypothetical protein
924	 60.20	+1	943349..944230	+	293	38233566	-	DIP0971	-	hypothetical protein
925	 52.23	0	944257..944637	+	126	38233567	-	DIP0972	-	hypothetical protein
926	 54.40	0	944687..945004	+	105	38233568	fdxA	DIP0973	-	ferredoxin
927	 59.22	+1	945034..946134	+	366	38233569	-	DIP0974	-	N-succinyldiaminopimelate aminotransferase
928	 56.97	0	946181..946912	+	243	38233570	-	DIP0975	-	putative RNA pseudouridylate synthase family protein
929	 48.75	-1	946947..947504	+	185	38233571	-	DIP0976	-	hypothetical protein
930	 59.07	+1	947511..948695	-	394	38233572	-	DIP0977	-	hypothetical protein
931	 59.73	+1	948776..950188	-	470	38233573	aroP1	DIP0978	-	aromatic amino acid transporter
932	 62.05	+1	950252..951226	-	324	38233574	-	DIP0979	-	putative succinyltransferase
933	 57.95	0	951237..952601	-	454	38233575	aroP2	DIP0980	-	aromatic amino acid transporter
934	 53.18	0	952671..953582	-	303	38233576	-	DIP0981	-	putative succinyltransferase
935	 55.56	0	953662..954759	+	365	38233577	dapE	DIP0982	-	dipeptidase
936	 53.73	0	954767..955531	+	254	38233578	-	DIP0983	-	hypothetical protein
937	 58.39	0	955524..956381	+	285	38233579	folP	DIP0984	-	dihydropteroate synthase
938	 60.00	+1	956378..957127	+	249	38233580	-	DIP0985	-	hypothetical protein
939	 54.84	0	957132..957410	+	92	38233581	-	DIP0986	-	hypothetical protein
940	 52.54	0	957488..957664	+	58	38233582	-	DIP0987	-	hypothetical protein
941	 55.06	0	957691..958560	+	289	38233583	-	DIP0988	-	putative macrolide resistance protein
942	 57.96	0	958618..960030	-	470	38233584	-	DIP0989	-	putative hydrolase
943	 55.74	0	960040..960780	-	246	38233585	-	DIP0990	-	putative decarboxylase (internal pH control related)
944	 57.54	0	960833..962005	-	390	38233586	-	DIP0991	-	putative glycosyltransferase
945	 52.81	0	962100..963326	+	408	161598676	glgC	DIP0992	-	glucose-1-phosphate adenylyltransferase
946	 57.08	0	963385..964062	-	225	38233588	-	DIP0993	-	putative methyltransferase
947	 55.28	0	964148..964867	+	239	38233589	-	DIP0994	-	RNA polymerase sigma factor SigE
948	 53.86	0	964908..965321	+	137	38233590	-	DIP0995	-	hypothetical protein
949	 49.55	0	965352..965795	+	147	38233591	tatB	DIP0996	-	sec-independent translocase
950	 59.61	+1	965798..966931	-	377	38233592	-	DIP0997	-	putative ATP-binding protein
951	 55.61	0	966944..967540	-	198	38233593	-	DIP0998	-	hypothetical protein
952	 60.54	+1	967544..968833	-	429	38233594	-	DIP0999	-	hypothetical protein
953	 56.67	0	968959..969468	+	169	38233595	-	DIP1000	-	hypothetical protein
954	 51.39	0	969480..970199	+	239	38233596	-	DIP1001	-	hypothetical protein
955	 57.40	0	970254..973967	-	1237	161598675	kgd	DIP1002	-	alpha-ketoglutarate decarboxylase
956	 56.80	0	974130..977870	-	1246	38233598	-	DIP1003	-	ABC transporter ATP-binding protein
957	 53.43	0	977878..978708	-	276	38233599	-	DIP1004	-	hypothetical protein
958	 56.73	0	978917..979228	-	103	38233600	-	DIP1005	-	transposase remnant
959	 52.15	0	979492..980304	-	270	38233601	aroE	DIP1006	-	shikimate 5-dehydrogenase
960	 56.04	0	980324..981904	+	526	38233602	-	DIP1007	-	putative type B carboxylesterase
961	 53.09	0	981926..982735	+	269	38233603	-	DIP1008	-	hypothetical protein
962	 49.08	-1	982785..983597	+	270	38233604	-	DIP1009	-	hypothetical protein
963	 52.30	0	983606..984148	-	180	38233605	-	DIP1010	-	hypothetical protein
964	 53.38	0	984453..985370	+	305	38233606	-	DIP1011	-	putative aldose 1-epimerase
965	 52.56	0	985407..987065	+	552	38233607	-	DIP1012	-	putative sodium:solute symporter
966	 47.87	-1	987078..987359	+	93	38233608	-	DIP1013	-	hypothetical protein
967	 53.67	0	987359..988489	+	376	38233609	galT	DIP1014	-	galactose-1-phosphate uridylyltransferase
968	 57.40	0	988473..989702	+	409	38233610	galK	DIP1015	-	galactokinase
969	 44.57	-1	989756..992887	-	1043	38233611	-	DIP1016	-	putative helicase
970	 47.73	-1	992898..993293	-	131	38233612	-	DIP1017	-	NUDIX family hydrolase
971	 57.32	0	993506..995548	+	680	38233613	deaD	DIP1018	-	DEAD-box helicase
972	 53.53	0	995636..996046	+	136	38233614	-	DIP1019	-	hypothetical protein
973	 52.90	0	996175..996639	-	154	38233615	-	DIP1020	-	hypothetical protein
974	 53.13	0	996688..997278	-	196	38233616	-	DIP1021	-	hypothetical protein
975	 50.64	0	997318..998883	-	521	38233617	putP	DIP1022	-	sodium/proline symporter
976	 51.84	0	999109..1002198	+	1029	38233618	-	DIP1023	-	SNF2/RAD54 family protein
977	 52.92	0	1002199..1003020	+	273	38233619	-	DIP1024	-	hypothetical protein
978	 51.34	0	1003052..1004173	+	373	38233620	-	DIP1025	-	exonuclease SbcD family protein
979	 48.46	-1	1004173..1006737	+	854	38233621	-	DIP1026	-	ATP-binding protein
980	 51.04	0	1006815..1007345	-	176	38233622	-	DIP1027	-	hypothetical protein
981	 49.90	0	1007587..1008069	+	160	38233623	-	DIP1028	-	MarR family transcriptional regulator
982	 52.74	0	1008175..1008375	+	66	38233624	-	DIP1029	-	hypothetical protein
983	 57.46	0	1008712..1009341	-	209	38233625	-	DIP1030	-	hypothetical protein
984	 56.13	0	1009343..1010860	-	505	38233626	-	DIP1031	-	putative iron-sulfur protein
985	 55.98	0	1010884..1011669	-	261	38233627	-	DIP1032	-	putative oxididoreductase subunit
986	 52.56	0	1012107..1013765	+	552	38233628	-	DIP1033	-	putative L-lactate permease
987	 52.33	0	1013777..1015429	+	550	38233629	argS	DIP1034	-	arginyl-tRNA synthetase
988	 52.52	0	1015432..1016760	+	442	38233630	lysA	DIP1035	-	diaminopimelate decarboxylase
989	 52.64	0	1016931..1018277	+	448	38233631	thrA	DIP1036	-	homoserine dehydrogenase
990	 53.61	0	1018282..1019208	+	308	38233632	thrB	DIP1037	-	homoserine kinase
991	 52.80	0	1019270..1021021	-	583	38233633	-	DIP1038	-	acyl-CoA synthetase
992	 53.59	0	1021371..1023434	+	687	38233634	rho	DIP1040	-	transcription termination factor Rho
993	 53.97	0	1023434..1024504	+	356	38233635	prfA	DIP1041	-	peptide chain release factor 1
994	 51.28	0	1024509..1025327	+	272	38233636	-	DIP1042	-	HemK family methytransferase
995	 54.22	0	1025435..1026085	+	216	38233637	-	DIP1043	-	hypothetical protein
996	 52.56	0	1026086..1027255	+	389	38233638	-	DIP1044	-	glycosyl trasferase
997	 51.80	0	1027273..1027716	+	147	38233639	-	DIP1045	-	integral membrane protein
998	 51.91	0	1028202..1028987	+	261	38233640	atpB	DIP1046	-	F0F1 ATP synthase subunit A
999	 55.42	0	1029073..1029312	+	79	38233641	atpE	DIP1047	-	F0F1 ATP synthase subunit C
1000	 55.91	0	1029340..1029906	+	188	38233642	atpF	DIP1048	-	F0F1 ATP synthase subunit B
1001	 57.54	0	1029912..1030733	+	273	38233643	atpH	DIP1049	-	F0F1 ATP synthase subunit delta
1002	 56.84	0	1030794..1032422	+	542	38233644	atpA	DIP1050	-	F0F1 ATP synthase subunit alpha
1003	 54.29	0	1032476..1033453	+	325	38233645	atpG	DIP1051	-	F0F1 ATP synthase subunit gamma
1004	 58.02	0	1033457..1034902	+	481	38233646	atpD	DIP1052	-	F0F1 ATP synthase subunit beta
1005	 56.18	0	1034916..1035287	+	123	38233647	atpC	DIP1053	-	F0F1 ATP synthase subunit epsilon
1006	 48.29	-1	1035514..1035981	+	155	38233648	-	DIP1054	-	hypothetical protein
1007	 49.86	0	1036006..1036695	+	229	38233649	-	DIP1055	-	hypothetical protein
1008	 52.28	0	1036724..1037008	+	94	38233650	-	DIP1056	-	hypothetical protein
1009	 52.94	0	1037086..1037544	-	152	38233651	-	DIP1057	-	putative methylmalonyl-CoA epimerase
1010	 49.54	0	1037621..1037947	+	108	38233652	-	DIP1058	-	hypothetical protein
53.75	MEAN

4.64	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.