IslandPath Analysis: Corynebacterium diphtheriae NCTC 13129



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 53.75   STD DEV: 4.64
Corynebacterium diphtheriae NCTC 13129, complete genome - 1..2488635
2272 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1681	 56.55	0	1796249..1797652	+	467	38234323	-	DIP1752	-	antibiotic ABC transporter
1682	 56.98	0	1797649..1798587	+	312	38234324	iunH	DIP1753	-	inosine-uridine preferring nucleoside hydrolase
1683	 58.86	+1	1798593..1799399	+	268	38234325	-	DIP1754	-	hypothetical protein
1684	 55.91	0	1799436..1800095	+	219	38234326	-	DIP1755	-	hypothetical protein
1685	 50.81	0	1800239..1803019	+	926	38234327	-	DIP1756	-	putative DNA methyltransferase
1686	 49.49	0	1803016..1803906	+	296	38234328	-	DIP1757	-	putative Mrr restriction system protein
1687	 50.72	0	1803982..1804326	-	114	38234329	-	DIP1758	-	hypothetical protein
1688	 42.53	-2	1804436..1805272	-	278	38234330	-	DIP1759	-	hypothetical protein
1689	 43.01	-2	1805322..1805507	-	61	38234331	-	DIP1760	-	hypothetical protein
1690	 50.96	0	1805784..1806617	+	277	38234332	-	DIP1761	-	hypothetical protein
1691	 48.54	-1	1806618..1807301	+	227	38234333	-	DIP1762	-	hypothetical protein
1692	 47.90	-1	1807896..1809062	-	388	38234334	-	DIP1763	-	hypothetical protein
1693	 57.03	0	1809198..1811045	-	615	38234335	lepA	DIP1764	-	GTP-binding protein LepA
1694	 56.99	0	1811324..1811881	+	185	38234336	-	DIP1765	-	hypothetical protein
1695	 57.20	0	1812042..1812305	+	87	38234337	rpsT	DIP1766	-	30S ribosomal protein S20
1696	 56.18	0	1812354..1812992	-	212	38234338	-	DIP1767	-	putative LysE type translocator
1697	 55.72	0	1812982..1813383	-	133	38234339	-	DIP1768	-	hypothetical protein
1698	 58.56	+1	1813394..1814368	-	324	38234340	-	DIP1769	-	hypothetical protein
1699	 57.47	0	1814322..1815995	-	557	38234341	-	DIP1770	-	hypothetical protein
1700	 57.94	0	1815992..1816621	-	209	38234342	-	DIP1771	-	hypothetical protein
1701	 56.08	0	1816728..1817549	-	273	38234343	-	DIP1772	-	hypothetical protein
1702	 59.89	+1	1817554..1818276	-	240	38234344	-	DIP1773	-	phosphoglycerate mutase family protein
1703	 57.69	0	1818283..1818750	-	155	38234345	-	DIP1774	-	hypothetical protein
1704	 56.48	0	1818773..1819459	-	228	38234346	nadD	DIP1775	-	nicotinic acid mononucleotide adenylyltransferase
1705	 56.61	0	1819483..1820775	-	430	38234347	proA	DIP1776	-	gamma-glutamyl phosphate reductase
1706	 58.00	0	1820793..1821923	-	376	38234348	proB	DIP1777	-	gamma-glutamyl kinase
1707	 56.35	0	1821944..1822195	-	83	38234349	-	DIP1778	-	hypothetical protein
1708	 58.61	+1	1822199..1823725	-	508	38234350	obgE	DIP1779	-	GTPase ObgE
1709	 57.30	0	1823886..1824152	-	88	38234351	rpmA	DIP1780	-	50S ribosomal protein L27
1710	 55.23	0	1824193..1824498	-	101	38234352	rplU	DIP1781	-	50S ribosomal protein L21
1711	 56.59	0	1824673..1827561	-	962	38234353	-	DIP1782	-	putative RNA-associated protein
1712	 58.39	0	1827843..1828277	-	144	38234354	ndk	DIP1783	-	nucleoside diphosphate kinase
1713	 53.86	0	1828445..1828858	-	137	38234355	-	DIP1784	-	hypothetical protein
1714	 59.52	+1	1828855..1830351	-	498	38234356	-	DIP1785	-	Mur ligase family protein
1715	 57.10	0	1830348..1833107	-	919	38234357	valS	DIP1786	-	valyl-tRNA synthetase
1716	 55.96	0	1833151..1834131	-	326	38234358	mdh	DIP1787	-	malate dehydrogenase
1717	 55.11	0	1834614..1835366	+	250	38234359	-	DIP1788	-	TetR family regulatory protein
1718	 53.44	0	1835403..1836695	-	430	38234360	clpX	DIP1789	-	ATP-dependent protease ATP-binding subunit
1719	 58.65	+1	1836842..1839373	-	843	38234361	-	DIP1790	-	glutamine amidotransferase protein
1720	 57.14	0	1839462..1840091	-	209	38234362	clpP2	DIP1791	-	ATP-dependent Clp protease proteolytic subunit
1721	 54.33	0	1840109..1840708	-	199	38234363	clpP	DIP1792	-	ATP-dependent Clp protease proteolytic subunit
1722	 57.02	0	1840874..1842220	-	448	38234364	tig	DIP1793	-	trigger factor
1723	 56.54	0	1843047..1843283	+	78	38234365	-	DIP1794	-	hypothetical protein
1724	 55.94	0	1843430..1844212	+	260	38234366	-	DIP1795	-	hypothetical protein
1725	 56.75	0	1844289..1844762	-	157	38234367	-	DIP1796	-	ribose-5-phosphate isomerase B
1726	 58.45	+1	1844794..1845414	-	206	38234368	-	DIP1797	-	hypothetical protein
1727	 54.03	0	1845536..1848154	+	872	38234369	-	DIP1798	-	putative aminopeptidase
1728	 56.34	0	1848410..1849426	+	338	38234370	-	DIP1799	-	putative mechanosensitive ion channel protein
1729	 57.76	0	1849438..1849830	+	130	38234371	-	DIP1800	-	putative hemoglobin
1730	 58.94	+1	1849827..1850447	-	206	38234372	-	DIP1801	-	hypothetical protein
1731	 56.31	0	1850457..1850900	-	147	38234373	-	DIP1802	-	hypothetical protein
1732	 56.31	0	1851027..1852697	-	556	38234374	-	DIP1803	-	putative ABC transporter ATP-binding protein
1733	 58.08	0	1852795..1853283	-	162	38234375	-	DIP1804	-	putative single-strand binding protein
1734	 56.65	0	1853467..1855503	-	678	38234376	-	DIP1805	-	hypothetical protein
1735	 59.58	+1	1855730..1858015	+	761	38234377	cstA1	DIP1806	-	carbon starvation protein
1736	 54.23	0	1858036..1858236	+	66	38234378	-	DIP1807	-	hypothetical protein
1737	 54.04	0	1858313..1858795	+	160	38234379	-	DIP1808	-	putative insertion element DNA-binding protein
1738	 51.78	0	1858843..1859655	+	270	38234380	-	DIP1809	-	putative transposase
1739	 59.20	+1	1859708..1860913	-	401	38234381	-	DIP1810	-	hypothetical protein
1740	 57.02	0	1861303..1862349	+	348	38234382	-	DIP1811	-	putative zinc-binding dehydrogenase
1741	 55.43	0	1862409..1863209	+	266	38234383	-	DIP1812	-	putative short chain dehydrogenase
1742	 53.08	0	1863228..1863860	+	210	38234384	orn	DIP1813	-	oligoribonuclease
1743	 53.43	0	1864038..1864868	+	276	38234385	-	DIP1814	-	dihydrodipicolinate synthase family protein
1744	 59.74	+1	1864869..1866038	-	389	38234386	-	DIP1815	-	putative lipoprotein
1745	 48.15	-1	1866129..1866317	-	62	38234387	-	DIP1816	-	hypothetical protein
1746	 49.78	0	1866723..1866953	+	76	38234388	-	DIP1817	-	hypothetical protein
1747	 45.96	-1	1866950..1867234	+	94	38234389	-	DIP1818	-	hypothetical protein
1748	 48.18	-1	1867227..1867556	+	109	38234390	-	DIP1819	-	hypothetical protein
1749	 52.50	0	1867754..1867873	+	39	38234391	-	DIP1820	-	hypothetical protein
1750	 60.16	+1	1867939..1868061	+	40	38234392	-	DIP1821	-	hypothetical protein
1751	 55.72	0	1868441..1868842	+	133	38234393	-	DIP1822	-	hypothetical protein
1752	 58.42	+1	1868835..1869113	+	92	38234394	-	DIP1823	-	HNH endonuclease family protein
1753	 60.70	+1	1869496..1870953	+	485	38234395	-	DIP1824	-	putative phage terminase protein
1754	 60.00	+1	1871192..1872241	+	349	38234396	-	DIP1825	-	hypothetical protein
1755	 55.98	0	1872225..1872776	+	183	38234397	-	DIP1826	-	hypothetical protein
1756	 61.11	+1	1872831..1873118	-	95	38234398	-	DIP1827	-	hypothetical protein
1757	 56.48	0	1873196..1874599	+	467	38234399	-	DIP1828	-	hypothetical protein
1758	 56.41	0	1874599..1874910	+	103	38234400	-	DIP1829	-	hypothetical protein
1759	 53.82	0	1874955..1875281	+	108	38234401	-	DIP1830	-	hypothetical protein
1760	 48.23	-1	1875281..1875703	+	140	38234402	-	DIP1831	-	hypothetical protein
1761	 55.56	0	1875706..1876119	+	137	38234403	-	DIP1832	-	hypothetical protein
1762	 48.40	-1	1876119..1876430	+	103	38234404	-	DIP1833	-	hypothetical protein
1763	 53.83	0	1876508..1878073	+	521	38234405	-	DIP1834	-	hypothetical protein
1764	 47.90	-1	1878067..1879254	+	395	38234406	-	DIP1835	-	hypothetical protein
1765	 57.79	0	1879255..1880043	+	262	38234407	-	DIP1836	-	triple helix repeat-containing collagen
1766	 58.46	+1	1880040..1880855	-	271	38234408	-	DIP1837	-	putative phage integrase
1767	 45.00	-1	1881329..1881508	-	59	38234409	-	DIP1838	-	hypothetical protein
1768	 56.43	0	1881693..1882151	+	152	38234410	-	DIP1840	-	hypothetical protein
1769	 56.21	0	1882155..1882460	-	101	38234411	-	DIP1841	-	hypothetical protein
1770	 55.07	0	1882473..1882748	-	91	38234412	-	DIP1842	-	hypothetical protein
1771	 57.17	0	1882837..1883310	+	157	38234413	bcp	DIP1843	-	bacterioferritin comigratory protein
1772	 60.47	+1	1883311..1883955	+	214	38234414	-	DIP1844	-	TetR family regulatory protein
1773	 60.68	+1	1883952..1884335	-	127	38234415	acpS	DIP1845	-	4'-phosphopantetheinyl transferase
1774	 59.55	+1	1884370..1893303	-	2977	38234416	fas	DIP1846	-	putative fatty acid synthase
1775	 53.17	0	1893482..1893859	-	125	38234417	-	DIP1847	-	hypothetical protein
1776	 52.12	0	1894158..1894535	+	125	38234418	-	DIP1848	-	hypothetical protein
1777	 53.78	0	1894563..1894919	+	118	38234419	-	DIP1849	-	hypothetical protein
1778	 59.78	+1	1894916..1895539	-	207	38234420	-	DIP1850	-	putative deoxyribonucleotide triphosphate pyrophosphatase
1779	 57.99	0	1895536..1896261	-	241	38234421	rph	DIP1851	-	ribonuclease PH
1780	 56.90	0	1896272..1897090	-	272	38234422	-	DIP1852	-	hypothetical protein
53.75	MEAN

4.64	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.