IslandPath Analysis: Clostridium perfringens str. 13



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 29.13   STD DEV: 3.46
Clostridium perfringens str. 13, complete genome - 1..3031430
2660 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
801	 26.71	0	984452..984919	+	155	18309783	-	CPE0801	-	hypothetical protein
802	 27.50	0	985047..985406	+	119	18309784	-	CPE0802	-	hypothetical protein
803	 28.04	0	985384..985761	+	125	18309785	-	CPE0803	-	hypothetical protein
804	 26.51	0	985945..987819	+	624	18309786	-	CPE0804	-	sensory box protein/histidinol phosphate phosphatase family protein
805	 30.28	0	988114..989946	+	610	18309787	-	CPE0805	-	cyclomaltodextrinase
806	 30.76	0	990191..991474	+	427	18309788	-	CPE0806	-	hypothetical protein
807	 22.62	-1	991753..992256	-	167	18309789	-	CPE0807	-	hypothetical protein
808	 23.26	-1	992576..993121	+	181	18309790	-	CPE0808	-	hypothetical protein
809	 27.86	0	993161..993781	-	206	18309791	-	CPE0809	-	hypothetical protein
810	 32.17	0	994044..994988	+	314	18309792	fhuD	CPE0810	-	iron(III) dicitrate ABC transporter
811	 32.54	0	995087..996100	+	337	18309793	fhuB	CPE0811	-	ferrichrome ABC transporter
812	 28.90	0	996104..997117	+	337	18309794	fhuG	CPE0812	-	ferrichrome ABC transporter
813	 31.93	0	997182..997964	+	260	18309795	fhuC	CPE0813	-	ferrichrome ABC transporter
814	 26.58	0	998264..998752	+	162	18309796	-	CPE0814	-	GNAT family acetyltransferase
815	 25.46	-1	998829..999044	+	71	18309797	-	CPE0815	-	hypothetical protein
816	 20.75	-2	999037..999354	+	105	18309798	-	CPE0816	-	hypothetical protein
817	 21.41	-2	999566..999892	-	108	18309799	-	CPE0817	-	hypothetical protein
818	 33.33	+1	1000306..1003689	+	1127	18309800	-	CPE0818	-	endo-beta-N-acetylglucosaminidase
819	 28.16	0	1003890..1004798	+	302	18309801	ddl	CPE0819	-	D-alanine--D-alanine ligase
820	 26.69	0	1004945..1005772	+	275	18309802	-	CPE0820	-	hypothetical protein
821	 35.88	+1	1006099..1007079	+	326	18309803	-	CPE0821	-	PTS system
822	 37.56	+2	1007130..1007933	+	267	18309804	-	CPE0822	-	PTS system, mannose/fructose/sorbose family, IIC component
823	 35.77	+1	1007953..1008444	+	163	18309805	-	CPE0823	-	PTS system
824	 33.55	+1	1008407..1008865	+	152	18309806	-	CPE0824	-	PTS system
825	 29.07	0	1009036..1009410	+	124	18309807	-	CPE0825	-	hypothetical protein
826	 28.17	0	1009782..1010033	+	83	18309808	-	CPE0826	-	hypothetical protein
827	 30.61	0	1010354..1011271	+	305	18309809	-	CPE0827	-	polysaccharide deacetylase family protein
828	 22.61	-1	1011728..1012510	+	260	18309810	-	CPE0828	-	hypothetical protein
829	 25.90	0	1012767..1013708	+	313	18309811	-	CPE0829	-	hypothetical protein
830	 27.29	0	1013773..1015128	-	451	18309812	-	CPE0830	-	hypothetical protein
831	 29.19	0	1015357..1017771	+	804	18309813	bgaL	CPE0831	-	beta-galactosidase
832	 29.98	0	1018565..1019518	+	317	18309814	-	CPE0832	-	hypothetical protein
833	 28.50	0	1020041..1021861	+	606	18309815	-	CPE0833	-	ABC transporter
834	 27.30	0	1021861..1023651	+	596	18309816	-	CPE0834	-	ABC transporter
835	 29.72	0	1023868..1024365	+	165	18309817	-	CPE0835	-	hypothetical protein
836	 24.98	-1	1024374..1026002	+	542	18309818	-	CPE0836	-	hypothetical protein
837	 25.61	-1	1026369..1026653	+	94	18309819	-	CPE0837	-	transcriptional regulator
838	 31.58	0	1026771..1027169	+	132	18309820	-	CPE0838	-	arsenate reductase ArsC
839	 30.07	0	1027186..1028502	+	438	18309821	-	CPE0839	-	hypothetical protein
840	 28.25	0	1028688..1029356	+	222	18309822	-	CPE0840	-	two-component response regulator
841	 26.31	0	1029353..1030363	+	336	18309823	-	CPE0841	-	two-component sensor histidine kinase
842	 19.64	-2	1030647..1030814	+	55	18309824	-	CPE0842	-	hypothetical protein
843	 24.15	-1	1030943..1031356	+	137	18309825	-	CPE0843	-	hypothetical protein
844	 23.90	-1	1031615..1031773	-	52	18309826	-	CPE0844	-	hypothetical protein
845	 26.96	0	1031779..1032390	-	203	18309827	-	CPE0845	-	hypothetical protein
846	 29.90	0	1032778..1034352	+	524	18309828	-	CPE0846	-	alpha-clostripain
847	 19.37	-2	1035447..1036241	+	264	18309829	-	CPE0847	-	hypothetical protein
848	 22.09	-2	1036701..1037438	+	245	18309830	-	CPE0848	-	hypothetical protein
849	 21.97	-2	1037849..1038499	+	216	18309831	-	CPE0849	-	hypothetical protein
850	 29.17	0	1039372..1040139	+	255	18309832	-	CPE0850	-	ABC transporter
851	 25.64	-1	1040120..1042174	+	684	18309833	-	CPE0851	-	ABC transporter
852	 29.68	0	1042539..1043960	+	473	18309834	-	CPE0852	-	hypothetical protein
853	 27.39	0	1044211..1044513	-	100	18309835	-	CPE0853	-	hypothetical protein
854	 29.83	0	1044777..1045919	+	380	18309836	aspC	CPE0854	-	aminotransferase, class V
855	 30.74	0	1046108..1046647	+	179	18309837	rubY	CPE0855	-	rubrerythrin
856	 32.45	0	1047164..1050232	+	1022	18309838	-	CPE0856	-	alpha-mannosidase
857	 29.75	0	1050489..1051046	-	185	18309839	-	CPE0857	-	hypothetical protein
858	 31.46	0	1051286..1052458	+	390	18309840	bdhA	CPE0858	-	NADH-dependent butanol dehydrogenase
859	 26.62	0	1052896..1053834	+	312	18309841	-	CPE0859	-	putative carbohydrate diacid regulator
860	 36.90	+2	1053981..1055240	+	419	18309842	-	CPE0860	-	gluconate permease
861	 35.03	+1	1055464..1056585	+	373	18309843	-	CPE0861	-	hypothetical protein
862	 29.85	0	1056913..1058349	+	478	18309844	deaD	CPE0862	-	ATP-dependent RNA helicase DeaD
863	 26.36	0	1058504..1058962	+	152	18309845	-	CPE0863	-	hypothetical protein
864	 29.82	0	1059103..1060527	+	474	18309846	-	CPE0864	-	MATE efflux family protein
865	 26.44	0	1060634..1060807	+	57	18309847	-	CPE0865	-	hypothetical protein
866	 31.48	0	1061148..1067462	+	2104	18309848	-	CPE0866	-	alpha-N-acetylglucosaminidase family protein
867	 25.00	-1	1067722..1067901	+	59	18309849	-	CPE0867	-	hypothetical protein
868	 30.75	0	1068014..1069174	-	386	18309850	alr	CPE0868	-	alanine racemase
869	 29.65	0	1069713..1070282	+	189	18309851	-	CPE0869	-	GNAT family acetyltransferase
870	 21.98	-2	1070334..1071452	-	372	18309852	-	CPE0870	-	two-component sensor histidine kinase
871	 23.23	-1	1071723..1072286	-	187	18309853	-	CPE0871	-	hypothetical protein
872	 31.08	0	1072648..1074423	+	591	18309854	-	CPE0872	-	metallopeptidase, M24 family
873	 24.38	-1	1074643..1075044	+	133	18309855	-	CPE0873	-	hypothetical protein
874	 19.18	-2	1075169..1075387	+	72	18309856	-	CPE0874	-	hypothetical protein
875	 33.69	+1	1075490..1076617	+	375	18309857	-	CPE0875	-	metalloprotease family protein
876	 31.98	0	1076721..1077164	+	147	18309858	-	CPE0876	-	GNAT family acetyltransferase
877	 30.03	0	1077347..1078012	-	221	18309859	-	CPE0877	-	hypothetical protein
878	 25.92	0	1078174..1079346	-	390	18309860	-	CPE0878	-	transposase
879	 29.47	0	1080208..1080750	+	180	18309861	-	CPE0879	-	GNAT family acetyltransferase
880	 22.75	-1	1081006..1081761	-	251	18309862	-	CPE0880	-	hypothetical protein
881	 30.53	0	1081969..1085862	+	1297	18309863	nagI	CPE0881	-	hyaluronidase
882	 34.89	+1	1086183..1086503	-	106	18309864	-	CPE0882	-	hypothetical protein
883	 28.57	0	1086932..1087120	+	62	18309865	-	CPE0883	-	hypothetical protein
884	 28.43	0	1087176..1087991	+	271	18309866	-	CPE0884	-	ABC transporter
885	 25.94	0	1087988..1089637	+	549	18309867	-	CPE0885	-	hypothetical protein
886	 26.59	0	1089786..1090571	-	261	18309868	-	CPE0886	-	LysM domain protein
887	 28.99	0	1090894..1091445	-	183	18309869	-	CPE0887	-	hypothetical protein
888	 25.04	-1	1091766..1092416	+	216	18309870	-	CPE0888	-	pyrophosphatase, MutT/nudix family
889	 26.19	0	1092507..1092926	+	139	18309871	-	CPE0889	-	hypothetical protein
890	 35.29	+1	1093292..1093546	+	84	18309872	-	CPE0890	-	hypothetical protein
891	 24.78	-1	1093462..1093917	+	151	18309873	-	CPE0891	-	hypothetical protein
892	 29.89	0	1094185..1095315	+	376	18309874	-	CPE0892	-	NADPH-dependent butanol dehydrogenase
893	 33.62	+1	1095669..1096019	+	116	18309875	pduU	CPE0893	-	propanediol utilization protein
894	 30.57	0	1096023..1096457	+	144	18309876	pduV	CPE0894	-	propanediol utilization protein
895	 29.69	0	1096475..1097050	+	191	18309877	-	CPE0895	-	two-component response regulator
896	 27.24	0	1097054..1098481	+	475	18309878	-	CPE0896	-	two-component sensor histidine kinase
897	 31.94	0	1098691..1100124	+	477	18309879	eutA	CPE0897	-	reactivating factor for ethanolamine ammonia lyase
898	 34.36	+1	1100143..1101510	+	455	18309880	eutB	CPE0898	-	ethanolamine ammonia lyase heavy chain
899	 34.35	+1	1101527..1102414	+	295	18309881	eutC	CPE0899	-	ethanolamine ammonia-lyase small subunit
900	 36.54	+2	1102436..1103089	+	217	18309882	eutL	CPE0900	-	ethanolamine utilization protein
29.13	MEAN

3.46	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.