version 1.0
Clostridium perfringens str. 13, complete genome - 1..3031430 2660 proteins Pos %G+C SD Location Strand Length PID Gene Synonym Code Product 2377 35.10 +1 2738209..2738829 - 206 18311359 rpsD CPE2377 - 30S ribosomal protein S4 2378 39.39 +2 2738853..2739248 - 131 18311360 rpsK CPE2378 - 30S ribosomal protein S11 2379 32.51 0 2739265..2739630 - 121 18311361 rpsM CPE2379 - 30S ribosomal protein S13 2380 32.46 0 2739867..2739980 - 37 18311362 rpmJ CPE2380 - ribosomal protein L36 2381 31.96 0 2739993..2740211 - 72 18311363 infA CPE2381 - translation initiation factor IF-1 2382 30.10 0 2740219..2740527 - 102 18311364 - CPE2382 - hypothetical protein 2383 35.87 +1 2740586..2741335 - 249 18311365 map CPE2383 - methionine aminopeptidase, type I 2384 33.33 +1 2741335..2741991 - 218 18311366 adk CPE2384 - adenylate kinase 2385 31.53 0 2742012..2743289 - 425 18311367 secY CPE2385 - preprotein translocase subunit SecY 2386 36.96 +2 2743292..2743732 - 146 18311368 rplO CPE2386 - 50S ribosomal protein L15 2387 32.76 +1 2743766..2743939 - 57 18311369 rpmD CPE2387 - 50S ribosomal protein L30 2388 37.55 +2 2743951..2744448 - 165 18311370 rpsE CPE2388 - 30S ribosomal protein S5 2389 36.67 +2 2744469..2744828 - 119 18311371 rplR CPE2389 - 50S ribosomal protein L18 2390 36.67 +2 2744859..2745398 - 179 18311372 rplF CPE2390 - 50S ribosomal protein L6 2391 35.34 +1 2745495..2745893 - 132 18311373 rpsH CPE2391 - 30S ribosomal protein S8 2392 36.56 +2 2745927..2746112 - 61 18311374 rpsN CPE2392 - 30S ribosomal protein S14 2393 32.96 +1 2746129..2746668 - 179 18311375 rplE CPE2393 - 50S ribosomal protein L5 2394 32.06 0 2746691..2747005 - 104 18311376 rplX CPE2394 - 50S ribosomal protein L24 2395 35.77 +1 2747029..2747397 - 122 18311377 rplN CPE2395 - 50S ribosomal protein L14 2396 33.33 +1 2747428..2747682 - 84 18311378 rpsQ CPE2396 - 30S ribosomal protein S17 2397 30.00 0 2747704..2747913 - 69 18311379 rpmC CPE2397 - ribosomal protein L29 2398 38.39 +2 2747913..2748347 - 144 18311380 rplP CPE2398 - 50S ribosomal protein L16 2399 35.13 +1 2748378..2749046 - 222 18311381 rpsC CPE2399 - 30S ribosomal protein S3 2400 34.82 +1 2749067..2749402 - 111 18311382 rplV CPE2400 - 50S ribosomal protein L22 2401 31.91 0 2749430..2749711 - 93 18311383 rpsS CPE2401 - 30S ribosomal protein S19 2402 38.97 +2 2749782..2750615 - 277 18311384 rplB CPE2402 - 50S ribosomal protein L2 2403 35.37 +1 2750670..2750963 - 97 18311385 rplW CPE2403 - 50S ribosomal protein L23 2404 35.80 +1 2751051..2751578 - 175 18311386 rplD CPE2404 - 50S ribosomal protein L4 2405 36.83 +2 2751603..2752232 - 209 161485641 rplC CPE2405 - 50S ribosomal protein L3 2406 32.36 0 2752315..2752623 - 102 18311388 rpsJ CPE2406 - 30S ribosomal protein S10 2407 39.45 +2 2753318..2754511 - 397 18311389 tuf CPE2407 - elongation factor Tu 2408 37.40 +2 2754585..2756651 - 688 18311390 fus CPE2408 - elongation factor G 2409 35.46 +1 2756732..2757202 - 156 18311391 rpsG CPE2409 - 30S ribosomal protein S7 2410 38.32 +2 2757362..2757742 - 126 18311392 rpsL CPE2410 - 30S ribosomal protein S12 2411 31.09 0 2757800..2758066 - 88 18311393 - CPE2411 - ribosomal protein L7AE family protein 2412 34.38 +1 2758152..2761688 - 1178 18311394 rpoC CPE2412 - DNA-directed RNA polymerase subunit beta' 2413 34.98 +1 2761768..2765472 - 1234 18311395 rpoB CPE2413 - DNA-directed RNA polymerase subunit beta 2414 36.89 +2 2765777..2766142 - 121 18311396 rplL CPE2414 - ribosomal protein L7/L12 2415 34.93 +1 2766197..2766697 - 166 161485640 rplJ CPE2415 - 50S ribosomal protein L10 2416 36.09 +2 2766914..2767603 - 229 18311398 rplA CPE2416 - 50S ribosomal protein L1 2417 37.09 +2 2767661..2768086 - 141 18311399 rplK CPE2417 - 50S ribosomal protein L11 2418 33.52 +1 2768161..2768682 - 173 18311400 nusG CPE2418 - transcription antitermination protein NusG 2419 32.00 0 2768720..2768944 - 74 18311401 secE CPE2419 - preprotein translocase subunit SecE 2420 32.00 0 2768998..2769147 - 49 18311402 rpmG CPE2420 - 50S ribosomal protein L33 2421 39.70 +2 2769330..2770523 - 397 18311403 tuf CPE2421 - elongation factor Tu 2422 28.09 0 2770748..2771395 - 215 18311404 sigH CPE2422 - RNA polymerase factor sigma-70 2423 29.02 0 2771477..2771986 - 169 18311405 - CPE2423 - hypothetical protein 2424 29.54 0 2772002..2772871 - 289 18311406 - CPE2424 - RNA methyltransferase, TrmH family, group 3 2425 32.38 0 2772894..2773631 - 245 18311407 thyX CPE2425 - FAD-dependent thymidylate synthase 2426 29.44 0 2773647..2774057 - 136 18311408 - CPE2426 - hypothetical protein 2427 30.41 0 2774285..2775685 - 466 18311409 cysS CPE2427 - cysteinyl-tRNA synthetase 2428 32.92 +1 2775790..2777502 - 570 18311410 proS CPE2428 - prolyl-tRNA synthetase 2429 29.35 0 2777857..2778534 - 225 18311411 ispD CPE2429 - 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase 2430 29.90 0 2778548..2779654 - 368 18311412 - CPE2430 - PIN/TRAM domain protein 2431 31.09 0 2779966..2780367 + 133 18311413 - CPE2431 - hypothetical protein 2432 30.23 0 2780401..2781465 - 354 18311414 - CPE2432 - DNA integrity scanning protein DisA 2433 32.53 0 2781485..2782846 - 453 18311415 radA CPE2433 - DNA repair protein RadA 2434 31.96 0 2783097..2783825 - 242 18311416 nagB CPE2434 - glucosamine-6-phosphate deaminase 2435 30.84 0 2783822..2784544 - 240 18311417 - CPE2435 - GntR family transcriptional regulator 2436 23.64 -1 2784744..2784908 + 54 18311418 - CPE2436 - hypothetical protein 2437 28.51 0 2785002..2785229 + 75 18311419 - CPE2437 - glutaredoxin 2438 31.75 0 2785352..2786800 - 482 18311420 gapN CPE2438 - NADP-dependent glyceraldehyde-3-phosphate dehydrogenas 2439 31.62 0 2786817..2787050 - 77 18311421 - CPE2439 - glutaredoxin 2440 32.48 0 2787053..2787991 - 312 18311422 - CPE2440 - thioredoxin-disulfide reductase 2441 30.92 0 2788268..2790712 - 814 18311423 clpC CPE2441 - negative regulator of genetic competence MecB/ClpC 2442 24.56 -1 2790737..2791750 - 337 18311424 - CPE2442 - ATP:guanido phosphotransferase 2443 26.00 0 2791734..2792333 - 199 18311425 - CPE2443 - hypothetical protein 2444 29.39 0 2792281..2792736 - 151 18311426 ctsR CPE2444 - transcriptional repressor 2445 25.84 0 2792953..2793606 + 217 18311427 - CPE2445 - hypothetical protein 2446 27.62 0 2793657..2795318 - 553 18311428 - CPE2446 - hypothetical protein 2447 41.52 +2 2795456..2795626 - 56 18311429 fer CPE2447 - ferredoxin 2448 30.35 0 2795795..2796700 - 301 18311430 - CPE2448 - PSP1 domain protein 2449 26.84 0 2796703..2797626 - 307 18311431 holB CPE2449 - DNA polymerase III subunit delta' 2450 31.52 0 2797648..2797977 - 109 18311432 - CPE2450 - hypothetical protein 2451 26.28 0 2798134..2798289 - 51 18311433 - CPE2451 - hypothetical protein 2452 25.89 0 2798306..2798896 - 196 18311434 gmk CPE2452 - guanylate kinase-like protein 2453 25.09 -1 2799143..2800573 - 476 18311435 - CPE2453 - Orn/Lys/Arg decarboxylase 2454 24.86 -1 2800591..2800767 - 58 18311436 csfB CPE2454 - putative csfB protein 2455 30.60 0 2800923..2802092 + 389 18311437 - CPE2455 - amidohydrolase-like protein 2456 25.70 0 2802121..2802618 - 165 18311438 - CPE2456 - hypothetical protein 2457 27.09 0 2802893..2803837 + 314 18311439 - CPE2457 - transport protein 2458 27.72 0 2803902..2804810 + 302 18311440 - CPE2458 - hypothetical protein 2459 28.83 0 2812125..2813501 - 458 18311441 murD CPE2459 - UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase 2460 31.80 0 2813812..2814855 + 347 18311442 bioB CPE2460 - biotin synthase 2461 31.88 0 2815098..2816339 - 413 18311443 - CPE2461 - putative oxidoreductase 2462 25.40 -1 2816430..2817299 - 289 18311444 mccF CPE2462 - LD-carboxypeptidase family protein 2463 30.74 0 2817473..2818591 - 372 18311445 pepT CPE2463 - peptidase 2464 34.33 +1 2818777..2820180 - 467 18311446 glyS CPE2464 - glycyl-tRNA synthetase 2465 32.47 0 2820866..2822371 - 501 18311447 lysS CPE2465 - lysyl-tRNA synthetase 2466 31.87 0 2822397..2822873 - 158 18311448 greA CPE2466 - transcription elongation factor GreA 2467 32.93 +1 2823152..2824132 - 326 18311449 - CPE2467 - putative dihydrouridine synthase 2468 30.38 0 2824139..2824918 - 259 18311450 - CPE2468 - pantothenate kinase 2469 31.36 0 2825121..2826791 - 556 18311451 - CPE2469 - formate--tetrahydrofolate ligase 2470 33.94 +1 2826993..2828798 - 601 18311452 ftsH CPE2470 - ATP-dependent metalloprotease FtsH 2471 28.08 0 2828873..2829424 - 183 18311453 hprT CPE2471 - hypoxanthine phosphoribosyltransferase 2472 25.25 -1 2829427..2830836 - 469 18311454 - CPE2472 - tRNA(Ile)-lysidine synthetase 2473 28.23 0 2831053..2833443 - 796 18311455 spoIIE CPE2473 - stage II sprulation protein E 2474 29.88 0 2834751..2835155 - 134 18311456 - CPE2474 - hypothetical protein 2475 29.77 0 2835215..2835607 - 130 18311457 - CPE2475 - hypothetical protein 2476 19.20 -2 2835631..2836005 - 124 18311458 - CPE2476 - hypothetical protein 29.13 MEAN 3.46 STD DEV
Last Updated: Dec 04, 2008
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.
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