IslandPathversion 1.0

IslandPath Analysis: Clostridium perfringens str. 13



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 29.13 STD DEV: 3.46
Clostridium perfringens str. 13, complete genome - 1..3031430
2660 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
2043	 25.69	0	2334511..2335557	-	348	18311025	holA	CPE2043	-	DNA polymerase III subunit delta
2044	 25.33	-1	2335601..2337211	-	536	18311026	-	CPE2044	-	hypothetical protein
2045	 33.88	+1	2337263..2337628	-	121	18311027	spoVAE	CPE2045	-	stage V sporulation protein AE
2046	 33.14	+1	2337684..2338703	-	339	18311028	spoVAD	CPE2046	-	stage V sporulation protein AD
2047	 33.33	+1	2338709..2339176	-	155	18311029	spoVAC	CPE2047	-	stage V sporulation protein AC
2048	 30.29	0	2339314..2340069	-	251	18311030	sigF	CPE2048	-	sporulation sigma factor SigF
2049	 30.73	0	2340087..2340509	-	140	18311031	spoIIAB	CPE2049	-	anti-sigma F factor
2050	 27.68	0	2340523..2340858	-	111	18311032	spoIIAA	CPE2050	-	anti-sigma F factor antagonist
2051	 28.22	0	2340992..2343277	-	761	18311033	-	CPE2051	-	ATP-dependent protease
2052	 33.33	+1	2343478..2344152	-	224	18311034	deoC	CPE2052	-	deoxyribose-phosphate aldolase
2053	 27.21	0	2344409..2344816	+	135	18311035	-	CPE2053	-	hypothetical protein
2054	 30.12	0	2345077..2347626	-	849	18311036	-	CPE2054	-	cation-transporting ATPase
2055	 32.55	0	2347871..2349520	+	549	18311037	-	CPE2055	-	putative manganese-dependent inorganic pyrophosphatase
2056	 24.26	-1	2349564..2350070	-	168	18311038	-	CPE2056	-	hypothetical protein
2057	 37.33	+2	2350288..2350662	-	124	18311039	-	CPE2057	-	hypothetical protein
2058	 31.47	0	2350872..2352266	-	464	18311040	-	CPE2058	-	glutamate decarboxylase
2059	 29.55	0	2352852..2353907	-	351	18311041	-	CPE2059	-	hypothetical protein
2060	 32.28	0	2354027..2355445	-	472	18311042	-	CPE2060	-	glutamate gamma-aminobutyrate antiporter
2061	 37.88	+2	2356148..2359663	-	1171	18311043	-	CPE2061	-	pyruvate-flavodoxin oxidoreductase
2062	 31.22	0	2359768..2360193	-	141	18311044	-	CPE2062	-	flavodoxin
2063	 27.75	0	2360400..2361473	-	357	18311045	murG	CPE2063	-	N-acetylglucosaminyl transferase
2064	 33.89	+1	2361658..2361837	+	59	18311046	-	CPE2064	-	small acid-soluble spore protein C1
2065	 30.30	0	2361959..2363737	-	592	18311047	recJ	CPE2065	-	single-stranded-DNA-specific exonuclease RecJ
2066	 26.07	0	2363749..2364960	-	403	18311048	-	CPE2066	-	peptidase, M16 family
2067	 32.82	+1	2365174..2365755	-	193	18311049	-	CPE2067	-	DJ-1 family protein
2068	 30.68	0	2365761..2368700	-	979	18311050	parC	CPE2068	-	DNA topoisomerase IV subunit A
2069	 31.49	0	2368714..2370666	-	650	18311051	parE	CPE2069	-	DNA topoisomerase IV subunit B
2070	 29.88	0	2370650..2371720	-	356	18311052	-	CPE2070	-	tRNA 2-selenouridine synthase
2071	 29.62	0	2371965..2373365	-	466	18311053	-	CPE2071	-	glycosyl transferase, group 2 family protein
2072	 24.94	-1	2374217..2375455	+	412	18311054	-	CPE2072	-	putative UV damage endonuclease
2073	 27.75	0	2375540..2376148	+	202	18311055	-	CPE2073	-	putative sporulation protein YtaF
2074	 32.05	0	2376317..2377486	-	389	18311056	-	CPE2074	-	trans-2-enoyl-CoA reductase
2075	 32.25	0	2377731..2379209	-	492	18311057	-	CPE2075	-	amino acid permease family protein
2076	 30.03	0	2379557..2381797	-	746	18311058	-	CPE2076	-	alpha-glucosidase
2077	 31.54	0	2381846..2382739	-	297	18311059	-	CPE2077	-	ROK family protein
2078	 31.68	0	2382880..2384328	-	482	18311060	-	CPE2078	-	hypothetical protein
2079	 26.26	0	2384713..2385207	+	164	18311061	-	CPE2079	-	hypothetical protein
2080	 30.21	0	2385275..2388409	-	1044	18311062	-	CPE2080	-	alpha-mannosidase
2081	 30.62	0	2388727..2389683	-	318	18311063	-	CPE2081	-	ABC transporter
2082	 29.82	0	2389701..2390669	-	322	18311064	-	CPE2082	-	ABC transporter
2083	 31.03	0	2390899..2391375	-	158	18311065	moaC	CPE2083	-	molybdenum cofactor biosynthesis protein C
2084	 27.25	0	2391414..2392070	-	218	18311066	modB	CPE2084	-	molybdate ABC transporter permease
2085	 28.19	0	2392067..2392843	-	258	18311067	modA	CPE2085	-	molybdenum ABC transporter
2086	 32.32	0	2392828..2393319	-	163	18311068	moaB	CPE2086	-	molybdenum cofactor synthesis protein
2087	 25.26	-1	2393660..2395183	-	507	18311069	-	CPE2087	-	DNA-binding response regulator, AraC family
2088	 26.42	0	2395188..2396924	-	578	18311070	-	CPE2088	-	sensor histidine kinase
2089	 23.45	-1	2397146..2397823	+	225	18311071	-	CPE2089	-	hypothetical protein
2090	 28.03	0	2398089..2399426	+	445	18311072	fmhB	CPE2090	-	FemAB family protein
2091	 26.80	0	2399789..2400094	+	101	18311073	-	CPE2091	-	PadR family transcriptional regulator
2092	 30.62	0	2400141..2400878	-	245	18311074	-	CPE2092	-	amino acid ABC transporter
2093	 29.42	0	2400897..2402405	-	502	18311075	-	CPE2093	-	amino acid ABC transporter
2094	 27.95	0	2402578..2403357	+	259	18311076	-	CPE2094	-	hypothetical protein
2095	 23.02	-1	2403482..2403898	-	138	18311077	-	CPE2095	-	hypothetical protein
2096	 24.45	-1	2404405..2405226	-	273	18311078	-	CPE2096	-	hypothetical protein
2097	 26.89	0	2405245..2406501	-	418	18311079	-	CPE2097	-	hypothetical protein
2098	 25.05	-1	2406617..2408065	-	482	18311080	virJ	CPE2098	-	two-component sensor histidine kinase
2099	 28.04	0	2408055..2408753	-	232	18311081	virI	CPE2099	-	two-component response regulator
2100	 26.77	0	2408956..2409351	-	131	18311082	-	CPE2100	-	hypothetical protein
2101	 25.77	0	2409484..2409774	-	96	18311083	-	CPE2101	-	hypothetical protein
2102	 28.16	0	2409786..2411543	-	585	18311084	-	CPE2102	-	helicase domain protein
2103	 28.46	0	2411804..2412664	+	286	18311085	-	CPE2103	-	ribosomal protein L11 methyltransferase
2104	 27.91	0	2413069..2413584	-	171	18311086	-	CPE2104	-	hypothetical protein
2105	 25.87	0	2413602..2413976	-	124	18311087	-	CPE2105	-	hypothetical protein
2106	 29.26	0	2413977..2415008	-	343	18311088	apbE	CPE2106	-	thiamine biosynthesis lipoprotein
2107	 27.70	0	2415180..2418425	-	1081	18311089	-	CPE2107	-	hypothetical protein
2108	 25.69	0	2418438..2419484	-	348	18311090	-	CPE2108	-	hypothetical protein
2109	 25.11	-1	2419685..2420134	-	149	18311091	-	CPE2109	-	hypothetical protein
2110	 28.99	0	2420422..2421111	+	229	18311092	-	CPE2110	-	hypothetical protein
2111	 29.66	0	2421136..2421843	+	235	18311093	-	CPE2111	-	hypothetical protein
2112	 30.88	0	2421968..2423722	-	584	18311094	-	CPE2112	-	subtilase family protein
2113	 31.85	0	2423724..2425544	-	606	18311095	-	CPE2113	-	hypothetical protein
2114	 31.42	0	2425791..2427146	-	451	18311096	-	CPE2114	-	23S rRNA (uracil-5-)-methyltransferase RumA
2115	 27.78	0	2427174..2427623	-	149	18311097	-	CPE2115	-	hypothetical protein
2116	 29.66	0	2427810..2429717	-	635	18311098	selB	CPE2116	-	selenocysteine-specific translation elongation factor
2117	 30.53	0	2429718..2431106	-	462	18311099	selA	CPE2117	-	selenocysteine synthase
2118	 31.04	0	2431123..2431863	-	246	18311100	selD	CPE2118	-	selenophosphate synthetase
2119	 33.33	+1	2431965..2432156	+	63	18311101	-	CPE2119	-	hypothetical protein
2120	 26.95	0	2432199..2432981	-	260	18311102	comEA	CPE2120	-	ComE operon protein
2121	 27.72	0	2433177..2434511	+	444	18311103	dacF	CPE2121	-	D-alanyl-D-alanine carboxypeptidase
2122	 29.88	0	2434543..2435439	-	298	18311104	-	CPE2122	-	hypothetical protein
2123	 28.61	0	2435436..2436749	-	437	18311105	-	CPE2123	-	membrane-bound protein
2124	 28.77	0	2436772..2437341	-	189	18311106	-	CPE2124	-	HD domain protein
2125	 27.09	0	2437344..2437952	-	202	18311107	nadD	CPE2125	-	nicotinic acid mononucleotide adenylyltransferase
2126	 29.04	0	2437954..2438256	-	100	18311108	-	CPE2126	-	putative RNA-binding protein
2127	 35.04	+1	2438274..2439560	-	428	18311109	obgE	CPE2127	-	GTPase ObgE
2128	 36.63	+2	2439728..2440030	-	100	18311110	rpmA	CPE2128	-	50S ribosomal protein L27
2129	 33.99	+1	2440034..2440339	-	101	18311111	-	CPE2129	-	hypothetical protein
2130	 36.54	+2	2440415..2440726	-	103	18311112	rplU	CPE2130	-	50S ribosomal protein L21
2131	 26.61	0	2440852..2442294	-	480	18311113	rng	CPE2131	-	ribonuclease, Rne/Rng family
2132	 28.53	0	2442311..2443018	-	235	18311114	-	CPE2132	-	hypothetical protein
2133	 31.66	0	2442996..2444849	-	617	18311115	-	CPE2133	-	radical SAM domain protein
2134	 23.27	-1	2444981..2445835	-	284	18311116	-	CPE2134	-	peptidase, M50 family
2135	 27.16	0	2445832..2446674	-	280	18311117	-	CPE2135	-	hypothetical protein
2136	 31.73	0	2446824..2447948	-	374	18311118	spoVE	CPE2136	-	cell cycle protein, FtsW/RodA/SpoVE family
2137	 28.94	0	2448096..2448368	-	90	18311119	minE	CPE2137	-	cell division topological specificity factor MinE
2138	 31.33	0	2448379..2449176	-	265	18311120	minD	CPE2138	-	septum site-determining protein MinD
2139	 29.09	0	2449205..2449840	-	211	18311121	minC	CPE2139	-	septum formation inhibitor
2140	 30.99	0	2450087..2453158	-	1023	18311122	-	CPE2140	-	penicillin-binding protein 2
2141	 27.11	0	2453167..2453664	-	165	18311123	-	CPE2141	-	rod shape-determining protein MreD
2142	 30.28	0	2453680..2454531	-	283	18311124	mreC	CPE2142	-	rod shape-determining protein MreC
29.13	MEAN

3.46	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.