IslandPath Analysis: Clostridium perfringens str. 13



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 29.13   STD DEV: 3.46
Clostridium perfringens str. 13, complete genome - 1..3031430
2660 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1896	 25.43	-1	2176562..2177257	+	231	18310878	-	CPE1896	-	hypothetical protein
1897	 30.28	0	2177512..2178492	+	326	18310879	-	CPE1897	-	BadF/BadG/BcrA/BcrD ATPase family protein
1898	 28.65	0	2178625..2179179	-	184	18310880	-	CPE1898	-	hypothetical protein
1899	 21.62	-2	2179345..2179899	-	184	18310881	-	CPE1899	-	hypothetical protein
1900	 24.34	-1	2180198..2180575	+	125	18310882	-	CPE1900	-	hypothetical protein
1901	 30.42	0	2181056..2182015	-	319	18310883	hslO	CPE1901	-	Hsp33-like chaperonin
1902	 26.69	0	2182031..2182768	-	245	18310884	-	CPE1902	-	hypothetical protein
1903	 30.77	0	2182820..2183092	-	90	18310885	-	CPE1903	-	small acid-soluble spore protein beta
1904	 31.49	0	2183294..2184271	+	325	18310886	asd	CPE1904	-	aspartate-semialdehyde dehydrogenase
1905	 28.88	0	2184296..2185171	+	291	18310887	dapA	CPE1905	-	dihydrodipicolinate synthase
1906	 29.93	0	2185244..2186008	+	254	18310888	dapB	CPE1906	-	dihydrodipicolinate reductase
1907	 29.13	0	2186304..2187446	-	380	18310889	patA	CPE1907	-	asparate aminotransferase
1908	 32.77	+1	2187446..2187982	-	178	18310890	-	CPE1908	-	cob(I)alamin adenosyltransferase
1909	 33.90	+1	2188176..2188886	+	236	18310891	dapD	CPE1909	-	tetrahydrodipicolinate succinylase
1910	 27.85	0	2188936..2189592	-	218	18310892	-	CPE1910	-	single-strand DNA-binding protein
1911	 26.13	0	2189708..2190484	-	258	18310893	-	CPE1911	-	polysaccharide deacetylase family protein
1912	 25.05	-1	2190592..2191122	+	176	18310894	-	CPE1912	-	hypothetical protein
1913	 27.10	0	2191188..2192294	+	368	18310895	-	CPE1913	-	hypothetical protein
1914	 28.20	0	2192466..2193887	+	473	18310896	-	CPE1914	-	PBP 5 synthesis repressor
1915	 28.19	0	2193942..2194583	-	213	18310897	hlyE	CPE1915	-	hemolysin III
1916	 29.90	0	2194709..2195203	+	164	18310898	-	CPE1916	-	hypothetical protein
1917	 29.74	0	2195318..2196877	-	519	18310899	-	CPE1917	-	hypothetical protein
1918	 29.33	0	2196988..2198310	-	440	18310900	folC	CPE1918	-	FolC bifunctional protein
1919	 33.64	+1	2198991..2201633	-	880	18310901	valS	CPE1919	-	valyl-tRNA synthetase
1920	 25.93	0	2202293..2202643	+	116	18310902	-	CPE1920	-	tetratricopeptide repeat protein
1921	 19.75	-2	2202701..2202862	-	53	18310903	-	CPE1921	-	hypothetical protein
1922	 27.72	0	2202849..2204024	-	391	18310904	-	CPE1922	-	transglutaminase domain protein
1923	 25.67	-1	2204030..2204668	-	212	18310905	recX	CPE1923	-	recombination regulator RecX
1924	 28.35	0	2204674..2205918	-	414	18310906	-	CPE1924	-	peptidase, M16 family
1925	 28.32	0	2205887..2206684	+	265	18310907	-	CPE1925	-	DNA-binding response regulator
1926	 27.62	0	2206684..2208207	+	507	18310908	-	CPE1926	-	sensor histidine kinase
1927	 32.53	0	2208522..2209268	-	248	18310909	fabG	CPE1927	-	3-ketoacyl-(acyl-carrier-protein) reductase
1928	 27.96	0	2209361..2210347	-	328	18310910	-	CPE1928	-	dipeptidase family protein
1929	 31.47	0	2210573..2211805	-	410	18310911	glyA	CPE1929	-	serine hydroxymethyltransferase
1930	 32.94	+1	2211985..2212755	+	256	18310912	-	CPE1930	-	hypothetical protein
1931	 29.69	0	2212756..2213277	+	173	18310913	-	CPE1931	-	hypothetical protein
1932	 30.04	0	2213295..2213567	-	90	18310914	-	CPE1932	-	hypothetical protein
1933	 32.27	0	2213854..2215647	-	597	18310915	aspS	CPE1933	-	aspartyl-tRNA synthetase
1934	 31.73	0	2215668..2216915	-	415	18310916	hisS	CPE1934	-	histidyl-tRNA synthetase
1935	 28.48	0	2216947..2218389	-	480	18310917	hemZ	CPE1935	-	coproporphyrinogen III oxidase
1936	 30.27	0	2218379..2218999	-	206	18310918	-	CPE1936	-	metallo-beta-lactamase family protein
1937	 32.89	+1	2219159..2219608	-	149	18310919	-	CPE1937	-	D-tyrosyl-tRNA deacylase
1938	 29.80	0	2219623..2221803	-	726	18310920	relA	CPE1938	-	GTP pyrophosphokinase
1939	 34.10	+1	2221955..2222473	-	172	18310921	apt	CPE1939	-	adenine phosphoribosyltransferase
1940	 26.55	0	2222518..2223372	-	284	18310922	-	CPE1940	-	DHH domain protein
1941	 28.62	0	2223573..2224442	-	289	18310923	secF	CPE1941	-	preprotein translocase subunit SecF
1942	 31.75	0	2224435..2225694	-	419	18310924	secD	CPE1942	-	preprotein translocase subunit SecD
1943	 31.15	0	2225792..2227165	-	457	18310925	-	CPE1943	-	astB/chuR-related protein
1944	 27.41	0	2227570..2227839	-	89	18310926	yajC	CPE1944	-	preprotein translocase subunit YajC
1945	 32.72	+1	2227878..2229020	-	380	18310927	tgt	CPE1945	-	queuine tRNA-ribosyltransferase
1946	 29.82	0	2229044..2230069	-	341	18310928	queA	CPE1946	-	S-adenosylmethionine:tRNA ribosyltransferase-isomerase
1947	 32.95	+1	2230091..2231131	-	346	18310929	ruvB	CPE1947	-	Holliday junction DNA helicase B
1948	 29.70	0	2231145..2231750	-	201	18310930	ruvA	CPE1948	-	Holliday junction DNA helicase motor protein
1949	 26.26	0	2231978..2232571	-	197	18310931	-	CPE1949	-	hypothetical protein
1950	 32.43	0	2232719..2236264	-	1181	18310932	cpdB	CPE1950	-	2', 3'-cyclic nucleotide 2'-phosphodiesterase
1951	 31.47	0	2236515..2240162	-	1215	18310933	cpdA	CPE1951	-	2', 3'-cyclic nucleotide 2'-phosphodiesterase
1952	 26.23	0	2240411..2241409	-	332	18310934	ptp	CPE1952	-	hypothetical protein
1953	 28.97	0	2241885..2242319	-	144	18310935	-	CPE1953	-	hemoglobin
1954	 35.91	+1	2242745..2243482	-	245	18310936	-	CPE1954	-	hypothetical protein
1955	 32.26	0	2243608..2244261	-	217	18310937	-	CPE1955	-	hypothetical protein
1956	 26.51	0	2244267..2245673	-	468	18310938	-	CPE1956	-	GntR family transcriptional regulator/aminotransferase
1957	 26.36	0	2245688..2246590	-	300	18310939	-	CPE1957	-	nucleotidyltransferase domain protein
1958	 32.07	0	2246632..2247105	-	157	18310940	-	CPE1958	-	hypothetical protein
1959	 30.38	0	2247237..2249030	-	597	18310941	hflX	CPE1959	-	GTP binding protein
1960	 29.14	0	2249137..2249661	+	174	18310942	hprT	CPE1960	-	hypoxanthine phosphoribosyltransferase
1961	 26.67	0	2249695..2250384	-	229	18310943	-	CPE1961	-	sporulation protein YunB
1962	 32.21	0	2250521..2252560	+	679	18310944	pbpA	CPE1962	-	penicillin-binding proteins 1A/1B
1963	 31.72	0	2252578..2253012	+	144	18310945	-	CPE1963	-	hypothetical protein
1964	 32.19	0	2253306..2254706	+	466	18310946	-	CPE1964	-	amino acid carrier protein
1965	 24.94	-1	2254743..2255135	-	130	18310947	-	CPE1965	-	hypothetical protein
1966	 28.21	0	2255183..2256157	-	324	18310948	-	CPE1966	-	GNAT family acetyltransferase
1967	 32.96	+1	2256585..2257124	+	179	18310949	-	CPE1967	-	DNA-binding protein
1968	 30.10	0	2257156..2258205	+	349	18310950	potA	CPE1968	-	spermidine/putrescine ABC transporter
1969	 29.08	0	2258208..2259053	+	281	18310951	potB	CPE1969	-	spermidine/putrescine ABC transporter
1970	 29.71	0	2259047..2259847	+	266	18310952	potC	CPE1970	-	spermidine/putrescine ABC transporter
1971	 30.56	0	2259849..2260931	+	360	18310953	potD	CPE1971	-	spermidine/putrescine ABC transporter
1972	 30.09	0	2260966..2261397	-	143	18310954	ndk	CPE1972	-	nucleoside diphosphate kinase
1973	 30.37	0	2261582..2261851	+	89	18310955	-	CPE1973	-	acylphosphatase
1974	 23.72	-1	2261991..2262146	-	51	18310956	-	CPE1974	-	hypothetical protein
1975	 25.93	0	2262316..2262882	-	188	18310957	-	CPE1975	-	hypothetical protein
1976	 30.97	0	2263061..2264332	+	423	18310958	dacF	CPE1976	-	D-alanyl-D-alanine carboxypeptidase
1977	 29.92	0	2264387..2265031	-	214	18310959	-	CPE1977	-	pyrophosphatase PpaX
1978	 30.76	0	2265621..2266631	+	336	18310960	asnA	CPE1978	-	asparagine synthetase AsnA
1979	 24.30	-1	2266757..2267575	+	272	18310961	-	CPE1979	-	hypothetical protein
1980	 28.57	0	2267687..2268064	+	125	18310962	-	CPE1980	-	lrgA family protein
1981	 31.93	0	2268057..2268767	+	236	18310963	-	CPE1981	-	lrgB-like family protein
1982	 24.78	-1	2268864..2269319	+	151	18310964	-	CPE1982	-	hypothetical protein
1983	 30.61	0	2269532..2271694	-	720	18310965	topB	CPE1983	-	DNA topoisomerase
1984	 32.73	+1	2271934..2273091	-	385	18310966	-	CPE1984	-	hypothetical protein
1985	 27.42	0	2273254..2273760	-	168	18310967	-	CPE1985	-	TspO/MBR family protein
1986	 22.24	-1	2273797..2275833	-	678	18310968	-	CPE1986	-	sensor histidine kinase
1987	 22.10	-2	2275823..2277709	-	628	18310969	-	CPE1987	-	sensor histidine kinase
1988	 27.67	0	2277830..2278765	-	311	18310970	-	CPE1988	-	tetratricopeptide repeat protein
1989	 29.64	0	2278886..2279806	-	306	18310971	-	CPE1989	-	hydrolase, alpha/beta fold family
1990	 25.96	0	2279929..2280525	-	198	18310972	-	CPE1990	-	hypothetical protein
1991	 27.14	0	2280811..2281941	-	376	18310973	-	CPE1991	-	hypothetical protein
1992	 29.12	0	2281978..2282523	-	181	18310974	-	CPE1992	-	hypothetical protein
1993	 29.50	0	2282533..2283132	-	199	18310975	coaE	CPE1993	-	dephospho-CoA kinase
1994	 27.87	0	2283149..2285749	-	866	18310976	polA	CPE1994	-	DNA polymerase I
1995	 30.50	0	2286083..2287000	-	305	18310977	-	CPE1995	-	glutaminase
29.13	MEAN

3.46	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.