IslandPath Analysis: Clostridium perfringens str. 13



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 29.13   STD DEV: 3.46
Clostridium perfringens str. 13, complete genome - 1..3031430
2660 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1597	 29.05	0	1870960..1871823	+	287	18310579	-	CPE1597	-	hypothetical protein
1598	 26.81	0	1871906..1872334	-	142	18310580	-	CPE1598	-	hypothetical protein
1599	 28.69	0	1872446..1873027	-	193	18310581	thiE	CPE1599	-	thiamine monophosphate synthase family protein
1600	 31.16	0	1873057..1874160	-	367	18310582	thiH	CPE1600	-	thiamine biosynthesis protein ThiH
1601	 35.69	+1	1874173..1874937	-	254	18310583	thiG	CPE1601	-	thiazole synthase
1602	 28.89	0	1875061..1875870	-	269	18310584	-	CPE1602	-	thiamine biosynthesis protein ThiF
1603	 26.67	0	1875946..1876140	-	64	18310585	-	CPE1603	-	thiamine biosynthesis protein ThiS
1604	 30.51	0	1876416..1878116	-	566	18310586	-	CPE1604	-	transporter, major facilitator family
1605	 25.31	-1	1878452..1879261	-	269	18310587	-	CPE1605	-	GTP pyrophosphokinase-like protein
1606	 26.67	0	1879313..1879612	-	99	18310588	-	CPE1606	-	hypothetical protein
1607	 30.63	0	1879670..1880113	-	147	18310589	-	CPE1607	-	methionine sulfoxide reductase B
1608	 24.69	-1	1880189..1880836	-	215	18310590	-	CPE1608	-	hypothetical protein
1609	 21.33	-2	1880986..1881285	+	99	18310591	-	CPE1609	-	hypothetical protein
1610	 28.25	0	1881329..1882312	-	327	18310592	-	CPE1610	-	endo-1,4-beta-xylanase
1611	 21.85	-2	1882553..1882822	-	89	18310593	-	CPE1611	-	hypothetical protein
1612	 26.45	0	1882925..1883578	+	217	18310594	-	CPE1612	-	hypothetical protein
1613	 23.50	-1	1883647..1884012	-	121	18310595	-	CPE1613	-	hypothetical protein
1614	 29.26	0	1884141..1885466	-	441	18310596	-	CPE1614	-	cell wall-binding protein
1615	 21.92	-2	1885709..1885927	-	72	18310597	-	CPE1615	-	hypothetical protein
1616	 28.57	0	1886074..1886262	+	62	18310598	-	CPE1616	-	hypothetical protein
1617	 30.05	0	1886615..1887010	-	131	18310599	-	CPE1617	-	hypothetical protein
1618	 27.13	0	1887026..1887283	-	85	18310600	-	CPE1618	-	hypothetical protein
1619	 27.62	0	1887300..1889591	-	763	18310601	-	CPE1619	-	ATP-dependent DNA helicase, UvrD/REP family
1620	 29.30	0	1890116..1890586	+	156	18310602	-	CPE1620	-	hypothetical protein
1621	 26.15	0	1890669..1891475	-	268	18310603	-	CPE1621	-	hypothetical protein
1622	 25.30	-1	1891744..1892739	-	331	18310604	-	CPE1622	-	hypothetical protein
1623	 24.62	-1	1892881..1893546	+	221	18310605	-	CPE1623	-	putative lipoprotein
1624	 24.77	-1	1893868..1895793	+	641	18310606	-	CPE1624	-	hypothetical protein
1625	 27.50	0	1896218..1899472	-	1084	18310607	-	CPE1625	-	helicase, SNF2/RAD54 family
1626	 28.47	0	1899839..1900825	-	328	18310608	-	CPE1626	-	transcriptional regulator
1627	 31.97	0	1900964..1901404	-	146	18310609	rbsB	CPE1627	-	ribose ABC transporter
1628	 32.78	+1	1901337..1901876	-	179	18310610	-	CPE1628	-	ribose ABC transporter
1629	 31.09	0	1901898..1902833	-	311	18310611	rbsC	CPE1629	-	ribose ABC transporter
1630	 30.35	0	1902847..1904352	-	501	18310612	rbsA	CPE1630	-	ribose ABC transporter
1631	 29.04	0	1904439..1904834	-	131	18310613	rbsD	CPE1631	-	D-ribose pyranase
1632	 29.47	0	1904837..1905769	-	310	18310614	rbsK	CPE1632	-	ribokinase
1633	 30.56	0	1905910..1906377	-	155	18310615	def	CPE1633	-	polypeptide deformylase
1634	 30.73	0	1906533..1907492	-	319	18310616	tagO	CPE1634	-	undecaprenyl-phosphate N-acetylglucosaminyltransferase
1635	 27.87	0	1907638..1908204	-	188	18310617	-	CPE1635	-	transcriptional regulator
1636	 32.40	0	1908420..1909064	-	214	18310618	ntpD	CPE1636	-	V-type ATP synthase subunit D
1637	 35.79	+1	1909067..1910449	-	460	18310619	ntpB	CPE1637	-	V-type ATP synthase subunit B
1638	 37.73	+2	1910442..1912217	-	591	18310620	ntpA	CPE1638	-	V-type ATP synthase subunit A
1639	 32.70	+1	1912234..1912551	-	105	18310621	ntpF	CPE1639	-	V-type ATP synthase subunit F
1640	 27.88	0	1912538..1913545	-	335	18310622	ntpC	CPE1640	-	V-type ATP synthase subunit C
1641	 26.13	0	1913558..1914154	-	198	18310623	ntpE	CPE1641	-	V-type ATPase, E subunit
1642	 35.35	+1	1914185..1914679	-	164	18310624	ntpK	CPE1642	-	V-type ATP synthase subunit K
1643	 32.20	0	1914734..1916680	-	648	18310625	ntpI	CPE1643	-	V-type ATP synthase subunit I
1644	 32.72	+1	1916667..1916993	-	108	18310626	-	CPE1644	-	hypothetical protein
1645	 28.04	0	1917270..1918949	-	559	18310627	-	CPE1645	-	radical SAM domain protein
1646	 26.53	0	1918849..1919451	-	200	18310628	-	CPE1646	-	hypothetical protein
1647	 25.80	0	1919598..1920884	-	428	18310629	-	CPE1647	-	hypothetical protein
1648	 27.25	0	1921032..1922561	+	509	18310630	spoVB	CPE1648	-	stage V sporulation protein B
1649	 26.34	0	1922655..1923455	-	266	18310631	-	CPE1649	-	hypothetical protein
1650	 28.35	0	1923565..1924407	-	280	18310632	-	CPE1650	-	hypothetical protein
1651	 32.34	0	1924419..1924922	-	167	18310633	-	CPE1651	-	hypothetical protein
1652	 26.75	0	1925171..1926172	+	333	18310634	-	CPE1652	-	hypothetical protein
1653	 27.07	0	1926200..1926550	-	116	18310635	-	CPE1653	-	hypothetical protein
1654	 28.66	0	1926770..1927240	+	156	18310636	-	CPE1654	-	AsnC family transcriptional regulator
1655	 27.94	0	1927347..1927550	+	67	18310637	-	CPE1655	-	hypothetical protein
1656	 29.61	0	1927598..1929343	-	581	18310638	-	CPE1656	-	hypothetical protein
1657	 28.65	0	1929544..1930398	+	284	18310639	comEC	CPE1657	-	late competence protein
1658	 26.17	0	1930455..1931138	-	227	18310640	-	CPE1658	-	hypothetical protein
1659	 30.59	0	1931324..1931542	+	72	18310641	feoA	CPE1659	-	ferrous iron transport protein A
1660	 30.95	0	1931580..1933343	+	587	18310642	feoB	CPE1660	-	ferrous iron transport protein B
1661	 30.80	0	1933553..1935250	-	565	18310643	argS	CPE1661	-	arginyl-tRNA synthetase
1662	 27.97	0	1935732..1937240	+	502	18310644	-	CPE1662	-	Ppx/GppA phosphatase family protein
1663	 29.71	0	1937338..1938552	-	404	18310645	-	CPE1663	-	hypothetical protein
1664	 28.02	0	1938718..1939338	-	206	18310646	-	CPE1664	-	peptidase, M50 family
1665	 30.43	0	1939543..1940922	-	459	18310647	-	CPE1665	-	PhoH family protein
1666	 27.64	0	1941144..1941758	+	204	18310648	-	CPE1666	-	hypothetical protein
1667	 26.97	0	1941795..1942124	-	109	18310649	-	CPE1667	-	single-strand binding protein
1668	 30.82	0	1942405..1943835	-	476	18310650	purB	CPE1668	-	adenylosuccinate lyase
1669	 31.80	0	1944078..1944338	-	86	18310651	hpr	CPE1669	-	phosphocarrier protein
1670	 30.07	0	1944433..1945626	-	397	18310652	aspC	CPE1670	-	aspartate aminotransferase
1671	 36.78	+2	1945779..1946039	-	86	18310653	spoVS	CPE1671	-	stage V sporulation protein S
1672	 34.34	+1	1946257..1947849	-	530	18310654	-	CPE1672	-	phosphodiesterase
1673	 34.56	+1	1948140..1949198	-	352	18310655	recA	CPE1673	-	recombinase A
1674	 29.95	0	1949334..1949924	-	196	18310656	-	CPE1674	-	CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase
1675	 29.30	0	1949908..1951245	-	445	18310657	-	CPE1675	-	hypothetical protein
1676	 31.03	0	1951314..1953704	-	796	18310658	spoIIIE	CPE1676	-	DNA translocase FtsK
1677	 30.78	0	1953836..1954579	-	247	18310659	-	CPE1677	-	Clp protease
1678	 30.91	0	1954579..1955775	-	398	18310660	dapG	CPE1678	-	aspartate kinase I
1679	 26.09	0	1955789..1956064	-	91	18310661	-	CPE1679	-	PRC-barrel domain protein
1680	 33.52	+1	1956198..1958306	-	702	18310662	pnpA	CPE1680	-	polynucleotide phosphorylase/polyadenylase
1681	 32.20	0	1958398..1958661	-	87	18310663	rpsO	CPE1681	-	30S ribosomal protein S15
1682	 26.77	0	1958777..1959706	-	309	18310664	ribC	CPE1682	-	bifunctional riboflavin kinase/FMN adenylyltransferase
1683	 28.93	0	1959710..1960594	-	294	18310665	truB	CPE1683	-	tRNA pseudouridine synthase B
1684	 29.87	0	1960598..1961551	-	317	18310666	-	CPE1684	-	DHH subfamily 1 protein
1685	 29.91	0	1961555..1961905	-	116	18310667	rbfA	CPE1685	-	ribosome-binding factor A
1686	 34.12	+1	1961927..1963966	-	679	18310668	infB	CPE1686	-	translation initiation factor IF-2
1687	 26.40	0	1963997..1964299	-	100	18310669	-	CPE1687	-	hypothetical protein
1688	 29.96	0	1964292..1964558	-	88	18310670	-	CPE1688	-	hypothetical protein
1689	 29.97	0	1964586..1965686	-	366	18310671	nusA	CPE1689	-	transcription elongation factor NusA
1690	 28.17	0	1965706..1966170	-	154	18310672	-	CPE1690	-	hypothetical protein
1691	 31.45	0	1966403..1970752	-	1449	18310673	polC	CPE1691	-	DNA polymerase III PolC
1692	 31.71	0	1970830..1971879	-	349	18310674	ispG	CPE1692	-	4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase
1693	 32.54	0	1971899..1972906	-	335	18310675	-	CPE1693	-	hypothetical protein
1694	 29.18	0	1972918..1974072	-	384	18310676	-	CPE1694	-	1-deoxy-D-xylulose 5-phosphate reductoisomerase
1695	 27.30	0	1974432..1975226	-	264	18310677	cdsA	CPE1695	-	phosphatidate cytidylyltransferase
1696	 30.05	0	1975244..1976005	-	253	18310678	uppS	CPE1696	-	undecaprenyl diphosphate synthase
29.13	MEAN

3.46	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.