IslandPathversion 1.0

IslandPath Analysis: Chlamydophila pneumoniae AR39



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 40.53 STD DEV: 3.43
Chlamydophila pneumoniae AR39, complete genome - 1..1229853
1112 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
263	 39.87	0	270591..271493	+	300	16752554	-	CP0265	-	hypothetical protein
264	 40.48	0	271445..271822	+	125	16752555	-	CP0266	-	HIT family protein
265	 44.73	+1	271846..273477	+	543	16752556	-	CP0267	-	hypothetical protein
266	 45.24	+1	273850..275184	+	444	16752557	-	CP0268	-	sodium:solute symporter family protein
267	 41.03	0	275354..275548	-	64	16752558	-	CP0269	-	hypothetical protein
268	 48.83	+2	275759..276616	-	285	16752559	-	CP0270	-	3-deoxy-7-phosphoheptulonate synthase
269	 43.17	0	276619..279720	-	1033	16752560	-	CP0271	-	hypothetical protein
270	 41.15	0	279849..280628	+	259	16752561	-	CP0272	-	amino acid ABC transporter, periplasmic amino acid-binding protein
271	 44.60	+1	282284..282940	+	218	16752562	-	CP0274	-	hypothetical protein
272	 42.19	0	283162..283974	+	270	16752563	-	CP0275	-	metal-dependent hydrolase, putative
273	 43.90	0	283962..285380	+	472	16752564	-	CP0276	-	GTP-binding protein HflX, putative
274	 43.05	0	285481..286746	+	421	16752565	-	CP0277	-	hypothetical protein
275	 45.76	+1	286743..287732	+	329	16752566	-	CP0278	-	hypothetical protein
276	 45.77	+1	287743..289905	+	720	16752567	-	CP0279	-	glycogen branching enzyme
277	 45.08	+1	290014..291783	+	589	16752568	-	CP0280	-	hypothetical protein
278	 46.43	+1	291994..293520	+	508	16752569	-	CP0281	-	hypothetical protein
279	 46.61	+1	293682..296009	+	775	16752570	-	CP0282	-	hypothetical protein
280	 41.46	0	296183..299023	-	946	16752571	-	CP0283	-	polymorphic membrane protein E/F family protein
281	 43.58	0	302150..305008	-	952	16752572	-	CP0285	-	polymorphic membrane protein E/F family protein
282	 44.02	+1	305047..307863	-	938	16752573	-	CP0286	-	polymorphic membrane protein E/F family protein
283	 44.06	+1	308375..308719	+	114	16752574	-	CP0287	-	hypothetical protein
284	 43.12	0	308745..309224	+	159	16752575	-	CP0288	-	hypothetical protein
285	 42.56	0	309230..310399	+	389	16752576	-	CP0289	-	hypothetical protein
286	 43.44	0	310535..312553	+	672	16752577	-	CP0290	-	hypothetical protein
287	 44.36	+1	312949..313746	+	265	16752578	-	CP0291	-	hypothetical protein
288	 43.08	0	313747..314598	+	283	16752579	-	CP0292	-	hypothetical protein
289	 40.26	0	314582..314971	+	129	16752580	-	CP0293	-	hypothetical protein
290	 43.63	0	315267..317354	+	695	16752581	-	CP0294	-	hypothetical protein
291	 42.96	0	317722..319611	+	629	16752582	-	CP0295	-	hypothetical protein
292	 41.46	0	319632..319754	+	40	16752583	-	CP0296	-	hypothetical protein
293	 43.67	0	320055..322133	+	692	16752584	-	CP0297	-	hypothetical protein
294	 45.01	+1	322470..325406	-	978	16752585	-	CP0298	-	polymorphic membrane protein H family protein
295	 44.11	+1	325433..328420	-	995	16752586	-	CP0299	-	polymorphic membrane protein G family protein
296	 38.54	0	328540..328635	-	31	16752587	-	CP0300	-	hypothetical protein
297	 43.88	0	328725..330269	-	514	16752588	-	CP0301	-	polymorphic membrane protein G family protein
298	 43.30	0	330527..333376	-	949	16752589	-	CP0302	-	polymorphic membrane protein G family protein
299	 42.66	0	333476..336262	+	928	16752590	-	CP0303	-	polymorphic membrane protein G family protein
300	 35.77	-1	336620..336742	-	40	16752591	-	CP0304	-	hypothetical protein
301	 40.77	0	336779..337894	+	371	16752592	-	CP0305	-	hypothetical protein
302	 43.92	0	338235..341021	-	928	16752593	-	CP0306	-	polymorphic membrane protein G family protein
303	 44.72	+1	341171..343963	-	930	16752594	-	CP0307	-	polymorphic membrane protein G family protein
304	 44.57	+1	344007..346817	-	936	16752595	-	CP0308	-	polymorphic membrane protein G family protein
305	 44.51	+1	347079..350909	-	1276	16752596	-	CP0309	-	polymorphic membrane protein G family protein
306	 46.89	+1	351214..352467	-	417	16752597	-	CP0310	-	hypothetical protein
307	 45.47	+1	352665..353183	-	172	16752598	-	CP0311	-	hypothetical protein
308	 41.01	0	353355..354305	-	316	16753070	-	CP0312	-	hypothetical protein
309	 41.94	0	354453..355091	-	212	16752599	-	CP0313	-	hypothetical protein
310	 41.29	0	355116..355643	-	175	16752600	-	CP0314	-	hypothetical protein
311	 43.65	0	355780..356865	+	361	16752601	trmU	CP0315	-	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
312	 43.70	0	356843..359380	-	845	16752602	-	CP0316	-	ATP-dependent Clp protease, ATP-binding subunit
313	 42.92	0	359578..360297	+	239	16752603	-	CP0317	-	hypothetical protein
314	 41.51	0	360294..361724	+	476	16752604	-	CP0318	-	phospholipase D family protein
315	 42.10	0	361734..363923	+	729	16752605	-	CP0319	-	hypothetical protein
316	 41.95	0	363923..364270	+	115	16752606	-	CP0320	-	glycine cleavage system protein H
317	 44.44	+1	364380..364685	+	101	16752607	-	CP0321	-	hypothetical protein
318	 41.07	0	364713..365048	+	111	16752608	-	CP0322	-	hypothetical protein
319	 43.71	0	365100..365870	-	256	16752609	-	CP0323	-	Na(+)-translocating NADH-quinone reductase subunit E
320	 40.03	0	365874..366515	-	213	16752610	-	CP0324	-	Na(+)-translocating NADH-quinone reductase subunit D
321	 41.74	0	366512..367474	-	320	16752611	-	CP0325	-	Na(+)-translocating NADH-quinone reductase subunit C
322	 44.18	+1	367478..368989	-	503	16752612	-	CP0326	-	Na(+)-translocating NADH-quinone reductase subunit B
323	 42.49	0	369085..369663	+	192	16753071	-	CP0327	-	hypothetical protein
324	 42.52	0	369629..370216	-	195	16752613	-	CP0328	-	hypothetical protein
325	 37.89	0	370232..371635	-	467	16752614	dnaA	CP0329	-	chromosomal replication initiation protein
326	 39.16	0	371977..372405	-	142	16752615	-	CP0330	-	hypothetical protein
327	 39.19	0	372409..372954	-	181	16752616	-	CP0331	-	hypothetical protein
328	 35.83	-1	373061..373180	-	39	16752617	-	CP0332	-	hypothetical protein
329	 42.73	0	373198..374091	+	297	16752618	mraW	CP0333	-	S-adenosyl-methyltransferase MraW
330	 35.07	-1	374088..374375	+	95	16752619	-	CP0334	-	hypothetical protein
331	 44.24	+1	374362..376323	+	653	16752620	-	CP0335	-	penicillin-binding protein
332	 42.70	0	376796..378247	+	483	16752621	murE	CP0336	-	UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
333	 42.89	0	378162..378956	+	264	16752622	-	CP0337	-	N-acetylmuramoyl-L-alanine amidase, putative
334	 40.26	0	379341..379643	+	100	16752623	-	CP0338	-	integration host factor beta-subunit, putative
335	 42.55	0	379765..380979	+	404	16752624	-	CP0339	-	hypothetical protein
336	 42.46	0	381054..382028	+	324	16752625	-	CP0340	-	acetyl-CoA carboxylase carboxyltransferase subunit alpha
337	 40.00	0	381994..383973	+	659	16752626	-	CP0341	-	ABC transporter, ATP-binding protein
338	 41.36	0	383948..384607	-	219	16752627	-	CP0342	-	hypothetical protein
339	 42.44	0	384585..385364	-	259	16752628	-	CP0343	-	hypothetical protein
340	 41.60	0	385361..386074	-	237	16752629	-	CP0344	-	DNA polymerase III subunit epsilon
341	 37.45	0	386067..386552	-	161	16752630	-	CP0345	-	hypothetical protein
342	 35.83	-1	386613..387092	-	159	16752631	-	CP0346	-	hypothetical protein
343	 42.19	0	387279..387470	+	63	16752632	-	CP0347	-	hypothetical protein
344	 41.55	0	387455..388342	+	295	16752633	-	CP0348	-	hypothetical protein
345	 43.78	0	388329..389228	-	299	16752634	-	CP0349	-	enoyl-(acyl carrier protein) reductase
346	 48.01	+2	389458..390234	+	258	16752635	-	CP0350	-	hypothetical protein
347	 45.39	+1	390310..391329	+	339	16752636	-	CP0351	-	hypothetical protein
348	 40.81	0	392203..393312	+	369	16753072	-	CP0353	-	A/G-specific adenine glycosylase
349	 46.06	+1	393313..393705	+	130	16752637	-	CP0354	-	mazG protein, putative
350	 41.21	0	393888..394661	-	257	16752638	-	CP0355	-	hypothetical protein
351	 42.59	0	394671..395318	-	215	16752639	-	CP0356	-	hypothetical protein
352	 38.01	0	395494..395664	-	56	16752640	-	CP0357	-	hypothetical protein
353	 43.90	0	396082..396819	+	245	16752641	-	CP0358	-	serine/threonine protein phosphatase, putative
354	 44.62	+1	396844..397959	+	371	16752642	-	CP0359	-	nifS protein, putative
355	 37.20	0	398019..399233	-	404	16752643	-	CP0360	-	hypothetical protein
356	 39.81	0	399226..400461	-	411	16752644	-	CP0361	-	hypothetical protein
357	 41.09	0	400471..400818	-	115	16752645	-	CP0362	-	hypothetical protein
358	 40.66	0	400811..401383	-	190	16752646	dcd	CP0363	-	deoxycytidine triphosphate deaminase
359	 37.10	-1	401505..401690	+	61	16752647	-	CP0364	-	hypothetical protein
360	 42.50	0	402053..403066	+	337	16752648	ruvB	CP0365	-	Holliday junction DNA helicase B
361	 40.66	0	403063..403881	+	272	16752649	-	CP0366	-	hypothetical protein
362	 43.16	0	403874..405868	-	664	16752650	-	CP0367	-	glycosyl hydrolase family protein
40.53	MEAN

3.43	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.