IslandPathversion 1.0

IslandPath Analysis: Chlorobium phaeobacteroides BS1



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 48.93 STD DEV: 4.12
Chlorobium phaeobacteroides BS1, complete genome - 1..2736403
2469 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
979	 50.22	0	1106534..1109689	-	1051	189499979	-	Cphamn1_1027	-	beta-phosphoglucomutase family hydrolase
980	 47.11	0	1109724..1110986	-	420	189499980	-	Cphamn1_1028	-	hypothetical protein
981	 50.00	0	1111103..1111756	-	217	189499981	-	Cphamn1_1029	-	dTMP kinase
982	 49.58	0	1111773..1112615	-	280	189499982	-	Cphamn1_1030	-	alpha/beta hydrolase fold
983	 56.13	+1	1113242..1113943	-	233	189499983	-	Cphamn1_1031	-	short-chain dehydrogenase/reductase SDR
984	 42.75	-1	1114081..1114218	+	45	189499984	-	Cphamn1_1032	-	hypothetical protein
985	 55.14	+1	1114265..1115965	+	566	189499985	-	Cphamn1_1033	-	pyruvate flavodoxin/ferredoxin oxidoreductase domain protein
986	 56.10	+1	1115967..1116818	+	283	189499986	-	Cphamn1_1034	-	pyruvate ferredoxin/flavodoxin oxidoreductase, beta subunit
987	 47.85	0	1116954..1117628	-	224	189499987	-	Cphamn1_1035	-	hypothetical protein
988	 51.80	0	1117625..1118095	-	156	189499988	-	Cphamn1_1036	-	hypothetical protein
989	 46.86	0	1118537..1119061	+	174	189499989	-	Cphamn1_1037	-	hypothetical protein
990	 57.08	+1	1119270..1120343	-	357	189499990	-	Cphamn1_1038	-	hypothetical protein
991	 54.94	+1	1120425..1120910	-	161	189499991	-	Cphamn1_1039	-	nuclease (SNase domain protein)
992	 53.23	+1	1120996..1122885	+	629	189499992	-	Cphamn1_1040	-	ABC transporter-related protein
993	 50.21	0	1122888..1125002	-	704	189499993	-	Cphamn1_1041	-	Prolyl oligopeptidase
994	 45.10	0	1125212..1126078	-	288	189499994	-	Cphamn1_1042	-	hypothetical protein
995	 50.60	0	1126360..1126938	-	192	189499995	-	Cphamn1_1043	-	NADPH-dependent FMN reductase
996	 51.20	0	1127202..1128242	-	346	189499996	-	Cphamn1_1044	-	pseudouridine synthase, RluA family
997	 52.70	0	1128308..1129717	+	469	189499997	-	Cphamn1_1045	-	dihydrolipoamide dehydrogenase
998	 49.22	0	1130178..1131329	+	383	189499998	-	Cphamn1_1046	-	magnesium chelatase ATPase subunit I
999	 51.70	0	1131329..1133185	+	618	189499999	-	Cphamn1_1047	-	magnesium chelatase ATPase subunit D
1000	 51.28	0	1133351..1137172	+	1273	189500000	-	Cphamn1_1048	-	magnesium chelatase, H subunit
1001	 51.64	0	1137419..1138909	-	496	189500001	-	Cphamn1_1049	-	inosine-5'-monophosphate dehydrogenase
1002	 52.72	0	1140463..1141251	+	262	189500002	-	Cphamn1_1050	-	Beta-lactamase
1003	 48.25	0	1141731..1142045	-	104	189500003	-	Cphamn1_1051	-	hypothetical protein
1004	 42.99	-1	1142005..1142325	-	106	189500004	-	Cphamn1_1052	-	protein of unknown function DUF497
1005	 48.30	0	1142530..1143030	+	166	189500005	-	Cphamn1_1053	-	hypothetical protein
1006	 43.96	-1	1143027..1143299	-	90	189500006	-	Cphamn1_1054	-	hypothetical protein
1007	 48.41	0	1143296..1143547	-	83	189500007	-	Cphamn1_1055	-	putative transcriptional regulator, CopG family
1008	 41.84	-1	1143754..1143894	+	46	189500008	-	Cphamn1_1056	-	hypothetical protein
1009	 47.55	0	1143935..1144813	+	292	189500009	-	Cphamn1_1057	-	Methyltransferase type 11
1010	 37.72	-2	1145138..1145365	+	75	189500010	-	Cphamn1_1058	-	addiction module component, TIGR02574 family
1011	 41.84	-1	1145362..1145643	+	93	189500011	-	Cphamn1_1059	-	plasmid stabilization system
1012	 51.38	0	1145688..1146086	+	132	189500012	-	Cphamn1_1060	-	nitrogenase-associated protein
1013	 45.72	0	1146548..1147645	+	365	189500013	-	Cphamn1_1062	-	DNA binding domain protein, excisionase family
1014	 41.34	-1	1147626..1148399	-	257	189500014	-	Cphamn1_1063	-	Type II site-specific deoxyribonuclease
1015	 48.45	0	1148703..1149284	-	193	189500015	-	Cphamn1_1064	-	pentapeptide repeat protein
1016	 50.84	0	1151299..1154406	+	1035	189500016	-	Cphamn1_1066	-	acriflavin resistance protein
1017	 51.87	0	1154557..1155732	+	391	189500017	-	Cphamn1_1067	-	efflux transporter, RND family, MFP subunit
1018	 53.12	+1	1155756..1158914	+	1052	189500018	-	Cphamn1_1068	-	transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
1019	 52.09	0	1158898..1160358	+	486	189500019	-	Cphamn1_1069	-	RND efflux system, outer membrane lipoprotein, NodT family
1020	 49.60	0	1160443..1160694	+	83	189500020	-	Cphamn1_1070	-	hypothetical protein
1021	 48.52	0	1160736..1161005	+	89	189500021	-	Cphamn1_1071	-	hypothetical protein
1022	 48.29	0	1161026..1163164	-	712	189500022	-	Cphamn1_1072	-	protein of unknown function DUF255
1023	 39.84	-2	1163294..1163416	+	40	189500023	-	Cphamn1_1073	-	hypothetical protein
1024	 46.51	0	1163466..1164338	+	290	189500024	-	Cphamn1_1074	-	peptide methionine sulfoxide reductase
1025	 44.58	-1	1164468..1164716	-	82	189500025	-	Cphamn1_1075	-	hypothetical protein
1026	 49.32	0	1164776..1165144	+	122	189500026	-	Cphamn1_1076	-	Dinitrogenase iron-molybdenum cofactor biosynthesis protein
1027	 59.41	+2	1165266..1165706	-	146	189500027	-	Cphamn1_1077	-	hypothetical protein
1028	 52.66	0	1168069..1168896	+	275	189500028	-	Cphamn1_1079	-	acid phosphatase (Class B)
1029	 56.84	+1	1168927..1169781	-	284	189500029	-	Cphamn1_1080	-	beta-lactamase domain protein
1030	 53.75	+1	1169862..1170434	-	190	189500030	-	Cphamn1_1081	-	surface antigen msp4 family protein
1031	 56.24	+1	1170690..1172060	+	456	189500031	-	Cphamn1_1082	-	transposase IS4 family protein
1032	 37.30	-2	1172355..1172606	+	83	189500032	-	Cphamn1_1083	-	protein of unknown function DUF86
1033	 54.32	+1	1172611..1173639	+	342	189500033	-	Cphamn1_1084	-	zinc-binding alcohol dehydrogenase family protein
1034	 45.40	0	1173659..1174006	-	115	189500034	-	Cphamn1_1085	-	hypothetical protein
1035	 51.40	0	1174097..1174633	-	178	189500035	-	Cphamn1_1086	-	hypothetical protein
1036	 50.32	0	1174842..1175471	-	209	189500036	-	Cphamn1_1087	-	glycosyl transferase family 2
1037	 49.05	0	1175489..1175908	-	139	189500037	-	Cphamn1_1088	-	protein of unknown function UPF0047
1038	 49.60	0	1175905..1176906	-	333	189500038	-	Cphamn1_1089	-	bacteriochlorophyll/chlorophyll synthetase
1039	 54.73	+1	1177120..1177362	+	80	189500039	-	Cphamn1_1090	-	hypothetical protein
1040	 47.31	0	1177448..1177633	-	61	189500040	-	Cphamn1_1091	-	4Fe-4S ferredoxin iron-sulfur binding domain protein
1041	 44.97	0	1177801..1177989	-	62	189500041	-	Cphamn1_1092	-	4Fe-4S ferredoxin iron-sulfur binding domain protein
1042	 48.29	0	1178136..1179098	-	320	189500042	-	Cphamn1_1093	-	PhoH family protein
1043	 46.46	0	1179119..1180108	-	329	189500043	-	Cphamn1_1094	-	ADP-L-glycero-D-manno-heptose-6-epimerase
1044	 42.79	-1	1180391..1180813	-	140	189500044	-	Cphamn1_1095	-	sigma-24 (FecI-like)
1045	 45.81	0	1181119..1182216	+	365	189500045	-	Cphamn1_1096	-	histidinol-phosphate aminotransferase
1046	 44.94	0	1182216..1182758	+	180	189500046	-	Cphamn1_1097	-	tRNA/rRNA methyltransferase (SpoU)
1047	 47.13	0	1182798..1183616	+	272	189500047	-	Cphamn1_1098	-	alpha/beta hydrolase fold
1048	 48.42	0	1183613..1184182	-	189	189500048	-	Cphamn1_1099	-	Aminoacyl-tRNA hydrolase
1049	 55.10	+1	1184342..1184851	-	169	189500049	-	Cphamn1_1100	-	hypothetical protein
1050	 52.57	0	1184964..1187042	-	692	189500050	-	Cphamn1_1101	-	V-type H(+)-translocating pyrophosphatase
1051	 47.56	0	1187275..1188300	-	341	189500051	-	Cphamn1_1102	-	Endonuclease/exonuclease/phosphatase
1052	 48.12	0	1188602..1189000	+	132	189500052	-	Cphamn1_1103	-	hypothetical protein
1053	 44.99	0	1189022..1189450	-	142	189500053	-	Cphamn1_1104	-	protein of unknown function DUF6 transmembrane
1054	 46.13	0	1189549..1190259	+	236	189500054	-	Cphamn1_1105	-	phosphoribosylaminoimidazole-succinocarboxamide synthase
1055	 47.89	0	1190286..1190924	+	212	189500055	-	Cphamn1_1106	-	SNARE associated Golgi protein
1056	 50.66	0	1191219..1192130	+	303	189500056	-	Cphamn1_1107	-	Transketolase domain protein
1057	 48.13	0	1192139..1192672	+	177	189500057	-	Cphamn1_1108	-	Protein of unknown function methylase putative
1058	 46.79	0	1192813..1193310	+	165	189500058	-	Cphamn1_1109	-	pantetheine-phosphate adenylyltransferase
1059	 49.71	0	1193333..1194541	+	402	189500059	-	Cphamn1_1110	-	aminotransferase class I and II
1060	 48.28	0	1194642..1195424	+	260	189500060	-	Cphamn1_1111	-	phospholipid/glycerol acyltransferase
1061	 46.79	0	1195518..1196483	+	321	189500061	-	Cphamn1_1112	-	PSP1 domain protein
1062	 48.20	0	1196514..1198625	+	703	189500062	-	Cphamn1_1113	-	methionyl-tRNA synthetase
1063	 49.03	0	1198888..1200129	+	413	189500063	-	Cphamn1_1114	-	hypothetical protein
1064	 48.35	0	1200428..1201546	-	372	189500064	-	Cphamn1_1115	-	Cyclopropane-fatty-acyl-phospholipid synthase
1065	 49.68	0	1201642..1202418	-	258	189500065	-	Cphamn1_1116	-	fatty acid hydroxylase
1066	 41.19	-1	1202611..1203183	-	190	189500066	-	Cphamn1_1117	-	anti-sigma-factor antagonist
1067	 49.02	0	1203295..1204263	-	322	189500067	-	Cphamn1_1118	-	tRNA delta(2)-isopentenylpyrophosphate transferase
1068	 50.30	0	1204263..1204934	-	223	189500068	-	Cphamn1_1119	-	maf protein
1069	 52.15	0	1204916..1206679	-	587	189500069	-	Cphamn1_1120	-	Na+/solute symporter
1070	 47.81	0	1206706..1207617	-	303	189500070	-	Cphamn1_1121	-	PfkB domain protein
1071	 50.58	0	1207657..1209546	-	629	189500071	-	Cphamn1_1122	-	alpha-amylase family protein
1072	 53.13	+1	1209691..1210392	+	233	189500072	-	Cphamn1_1123	-	tRNA pseudouridine synthase A
1073	 49.36	0	1210571..1212361	+	596	189500073	-	Cphamn1_1124	-	Lytic transglycosylase catalytic
1074	 47.28	0	1212585..1213781	+	398	189500074	-	Cphamn1_1125	-	arsenite-activated ATPase ArsA
1075	 50.66	0	1213935..1215002	+	355	189500075	-	Cphamn1_1126	-	phospho-2-dehydro-3-deoxyheptonate aldolase
1076	 45.59	0	1215061..1215264	+	67	189500076	-	Cphamn1_1127	-	hypothetical protein
1077	 47.18	0	1215287..1216420	+	377	189500077	-	Cphamn1_1128	-	hypothetical protein
1078	 48.54	0	1216460..1216630	+	56	189500078	-	Cphamn1_1129	-	hypothetical protein
48.93	MEAN

4.12	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.