IslandPathversion 1.0

IslandPath Analysis: Cellvibrio japonicus Ueda107



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 52.09 STD DEV: 5.42
Cellvibrio japonicus Ueda107, complete genome - 1..4576573
3754 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1945	 45.55	-1	2317050..2318915	-	621	192360723	-	CJA_2002	-	putative peptidyl-prolyl cis-trans isomerase D
1946	 49.45	0	2319146..2319418	-	90	192361790	-	CJA_2003	-	DNA-binding protein HU superfamily
1947	 47.35	0	2319663..2322080	-	805	192359285	lon	CJA_2004	-	ATP-dependent protease La
1948	 45.70	-1	2322219..2323520	-	433	192361200	clpX	CJA_2005	-	ATP-dependent Clp protease, ATP-binding subunit ClpX
1949	 46.67	-1	2323645..2324289	-	214	192360657	clpP	CJA_2006	-	ATP-dependent Clp protease, proteolytic subunit ClpP
1950	 48.63	0	2324459..2325772	-	437	192359587	tig	CJA_2007	-	trigger factor
1951	 49.35	0	2326073..2326609	-	178	192359147	-	CJA_2009	-	hypothetical protein
1952	 52.40	0	2326632..2329253	-	873	192360805	-	CJA_2010	-	putative DNA topoisomerase I
1953	 52.40	0	2329608..2330315	+	235	192361380	-	CJA_2013	-	hypothetical protein
1954	 55.21	0	2329614..2329709	-	31	192359518	-	CJA_2011	-	hypothetical protein
1955	 53.85	0	2330302..2330847	-	181	192362453	-	CJA_2012	-	hypothetical protein
1956	 56.36	0	2331001..2331456	+	151	192361362	-	CJA_2014	-	universal stress protein family
1957	 53.68	0	2331460..2333361	-	633	192361001	-	CJA_2015	-	ABC transporter, ATP-binding protein
1958	 53.33	0	2333451..2333615	-	54	192362069	-	CJA_2016	-	hypothetical protein
1959	 54.19	0	2333644..2335671	+	675	192358879	lmt23A	CJA_2017	-	lytic murein transglycosylase, putative, lmt23A
1960	 47.22	0	2335755..2336906	-	383	192359944	-	CJA_2018	-	ISCja2, transposase
1961	 43.17	-1	2337048..2337413	-	121	192359855	-	CJA_2019	-	hypothetical protein
1962	 48.96	0	2337486..2338400	-	304	192362347	-	CJA_2020	-	peptidyl-prolyl cis-trans isomerase, cyclophilin-type domain protein
1963	 53.58	0	2338442..2339419	-	325	192359409	-	CJA_2021	-	HPP family
1964	 47.92	0	2339456..2339551	+	31	192360192	-	CJA_2022	-	hypothetical protein
1965	 56.81	0	2339614..2339826	+	70	192359964	-	CJA_2023	-	hypothetical protein
1966	 54.41	0	2339798..2342089	+	763	192361277	-	CJA_2024	-	copper-translocating P-type ATPase
1967	 53.01	0	2342103..2342600	+	165	192360943	hmrR2	CJA_2025	-	MerR-family transcriptional regulator
1968	 50.51	0	2343124..2344485	+	453	192361982	-	CJA_2026	-	outer membrane efflux protein
1969	 54.44	0	2344478..2345884	+	468	192359541	-	CJA_2027	-	multicopper oxidase
1970	 51.16	0	2345963..2346091	-	42	192360608	-	CJA_2028	-	hypothetical protein
1971	 45.34	-1	2346119..2347609	-	496	192359736	-	CJA_2029	-	possible msrA, pms peptide methionine sulfoxide reductase
1972	 41.77	-1	2347602..2347850	+	82	192360809	narB	CJA_2030	-	assimilatory nitrate reductase
1973	 53.64	0	2347907..2349940	+	677	192361896	prrA	CJA_2031	-	TonB-dependent outer membrane receptor
1974	 54.52	0	2349950..2351233	+	427	192359195	-	CJA_2032	-	putative regulatory lipoprotein
1975	 53.13	0	2351230..2352588	+	452	192360638	-	CJA_2033	-	Predicted thiol oxidoreductase
1976	 48.15	0	2352635..2352796	+	53	192361244	-	CJA_2034	-	hypothetical protein
1977	 50.35	0	2352802..2354217	-	471	192361602	-	CJA_2035	-	putative lipoprotein
1978	 53.30	0	2354217..2356961	-	914	192359989	-	CJA_2036	-	hypothetical protein
1979	 47.21	0	2357001..2357663	-	220	192359391	-	CJA_2037	-	hypothetical protein
1980	 55.30	0	2357811..2359226	+	471	192361619	pabB	CJA_2038	-	para-aminobenzoate synthase, component I
1981	 54.85	0	2359290..2360042	+	250	192360836	-	CJA_2039	-	carboxymethylenebutenolidase
1982	 53.27	0	2360120..2362060	-	646	192360162	pel10B	CJA_2040	-	pectate lyase, putative, pel10B
1983	 49.51	0	2362251..2362868	-	205	192361644	-	CJA_2041	-	phosphoserine phosphatase/homoserine phosphotransferase bifunctional protein
1984	 52.07	0	2363078..2363803	+	241	192362414	cysH	CJA_2042	-	3'-phosphoadenylylsulfate reductase
1985	 54.82	0	2363816..2364448	-	210	192361568	-	CJA_2043	-	protein-methionine-S-oxide reductase
1986	 48.77	0	2364514..2365608	-	364	192359025	-	CJA_2044	-	possible protease SohB
1987	 48.62	0	2365643..2366296	-	217	192362022	-	CJA_2045	-	hypothetical protein
1988	 53.29	0	2366346..2367227	-	293	192362038	-	CJA_2046	-	hydrolase, NUDIX family
1989	 50.09	0	2367257..2368963	-	568	192360329	-	CJA_2047	-	PA1822-like protein
1990	 53.36	0	2369200..2369913	-	237	192359256	dnaQ	CJA_2048	-	DNA polymerase III, epsilon subunit
1991	 55.40	0	2369988..2370422	-	144	192361631	rnhA	CJA_2049	-	RNase H
1992	 54.53	0	2370397..2371302	-	301	192360820	-	CJA_2050	-	Generic methyl-transferase
1993	 48.96	0	2371390..2371485	-	31	192359473	-	CJA_2051	-	hypothetical protein
1994	 54.25	0	2371608..2372243	+	211	192362517	-	CJA_2052	-	hydroxyacylglutathione hydrolase
1995	 51.99	0	2372453..2374012	+	519	192361254	lmt23B	CJA_2053	-	lytic murein transglycosylase, putative, lmt23B
1996	 51.67	0	2374082..2375695	-	537	192362004	-	CJA_2054	-	peptide ABC transporter, ATP-binding protein
1997	 48.19	0	2375700..2376581	-	293	192359661	oppC	CJA_2055	-	oligopeptide ABC transporter, permease protein
1998	 50.64	0	2376581..2377516	-	311	192360499	oppB	CJA_2056	-	oligopeptide transport system permease protein oppB
1999	 47.29	0	2377528..2378265	-	245	192361776	-	CJA_2057	-	oligopeptide ABC transporter periplasmic oligopeptide-binding protein
2000	 49.56	0	2378235..2379134	-	299	192358787	-	CJA_2058	-	oligopeptide ABC transporter periplasmic oligopeptide-binding protein
2001	 46.87	0	2379215..2381305	-	696	192360108	-	CJA_2059	-	Peptidase family M3
2002	 49.84	0	2381678..2382295	+	205	192360904	-	CJA_2060	-	hypothetical protein
2003	 47.47	0	2382309..2383277	+	322	192362269	-	CJA_2061	-	sensory box/GGDEF family protein
2004	 40.74	-2	2383367..2383501	-	44	192359682	-	CJA_2062	-	hypothetical protein
2005	 48.45	0	2383574..2384122	-	182	192360455	uvs015	CJA_2063	-	Uvs015
2006	 51.41	0	2384115..2386133	-	672	192360395	ccmF	CJA_2064	-	cytochrome c-type biogenesis protein CcmF
2007	 51.18	0	2386123..2386587	-	154	192361384	-	CJA_2065	-	CycJ
2008	 52.82	0	2386653..2386847	-	64	192362454	ccmD	CJA_2066	-	heme exporter protein CcmD
2009	 52.55	0	2386851..2387615	-	254	192359499	-	CJA_2067	-	heme exporter protein C
2010	 56.70	0	2387687..2388388	-	233	192358904	ccmB	CJA_2068	-	heme exporter protein CcmB
2011	 54.95	0	2388388..2389053	-	221	192359720	ccmA	CJA_2069	-	heme ABC exporter, ATP-binding protein CcmA
2012	 52.03	0	2389073..2391046	+	657	192361051	-	CJA_2070	-	hypothetical protein
2013	 50.17	0	2391059..2391361	+	100	192361951	-	CJA_2071	-	FlhB domain protein
2014	 50.49	0	2391383..2393917	-	844	192359360	-	CJA_2072	-	sensory box protein
2015	 56.22	0	2393975..2395084	-	369	192360215	ald	CJA_2073	-	alanine dehydrogenase
2016	 55.56	0	2395381..2395893	+	170	192360863	-	CJA_2074	-	hypothetical protein
2017	 53.14	0	2395916..2396824	-	302	192359196	-	CJA_2075	-	hypothetical protein
2018	 51.52	0	2396912..2397109	+	65	192360031	-	CJA_2076	-	hypothetical protein
2019	 55.05	0	2397233..2398024	+	263	192361412	-	CJA_2077	-	hypothetical protein
2020	 54.16	0	2398177..2399751	+	524	192362233	aer-2	CJA_2078	-	aerotaxis receptor Aer-2
2021	 52.75	0	2399827..2401155	+	442	192359441	bioA	CJA_2079	-	adenosylmethionine-8-amino-7-oxononanoate transaminase
2022	 52.58	0	2401219..2402226	-	335	192360220	trpS	CJA_2080	-	tryptophanyl-tRNA synthetase
2023	 52.23	0	2402317..2403348	-	343	192361025	-	CJA_2081	-	cyclic nucleotide-binding domain protein
2024	 53.44	0	2403544..2404881	-	445	192362291	-	CJA_2082	-	aminopeptidase, M18 family
2025	 54.77	0	2404938..2405702	-	254	192361622	-	CJA_2083	-	glycoprotease family protein
2026	 51.22	0	2405759..2406412	-	217	192359071	adk	CJA_2084	-	adenylate kinase
2027	 49.68	0	2406764..2407234	+	156	192362390	-	CJA_2085	-	transcriptional regulator, AsnC family
2028	 52.69	0	2407356..2408993	-	545	192360693	-	CJA_2086	-	methyl-accepting chemotaxis protein
2029	 52.56	0	2409059..2410525	-	488	192360334	gabD	CJA_2087	-	succinate-semialdehyde dehydrogenase
2030	 51.10	0	2410529..2412262	-	577	192361826	-	CJA_2088	-	Cell volume regulation protein A homolog
2031	 50.73	0	2412444..2414438	+	664	192359348	rnb	CJA_2089	-	exoribonuclease II
2032	 47.96	0	2414463..2414927	+	154	192359197	-	CJA_2090	-	Family of unknown function (DUF589) superfamily
2033	 33.33	-2	2414995..2415582	-	195	192361401	-	CJA_2091	-	hypothetical protein
2034	 44.74	-1	2415572..2416816	-	414	192362239	-	CJA_2092	-	hypothetical protein
2035	 47.69	0	2417351..2419405	-	684	192359162	-	CJA_2093	-	Rhs family protein
2036	 52.38	0	2419478..2419792	+	104	192361898	-	CJA_2094	-	IS66 family element, Orf1 protein
2037	 46.72	0	2419789..2420139	+	116	192361289	-	CJA_2095	-	IS66 family element, Orf2 protein
2038	 46.81	0	2420172..2421737	+	521	192362471	-	CJA_2097	-	IS66 family element, transposase
2039	 46.38	-1	2421591..2422640	-	349	192360639	-	CJA_2096	-	RHS Repeat family
2040	 46.40	-1	2422576..2424159	-	527	192361425	-	CJA_2098	-	IS66 family element, transposase
2041	 45.87	-1	2424198..2424548	-	116	192360774	-	CJA_2099	-	IS66 family element, Orf2 protein
2042	 51.11	0	2424545..2424859	-	104	192360171	-	CJA_2100	-	IS66 family element, Orf1 protein
2043	 42.66	-1	2424928..2428335	-	1135	192360373	-	CJA_2101	-	putative cytoplasmic membrane protein
2044	 51.06	0	2428997..2430604	-	535	192360005	-	CJA_2102	-	Predicted deacylase
52.09	MEAN

5.42	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.