IslandPathversion 1.0

IslandPath Analysis: Cellvibrio japonicus Ueda107



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 52.09 STD DEV: 5.42
Cellvibrio japonicus Ueda107, complete genome - 1..4576573
3754 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1635	 50.74	0	1938690..1939568	+	292	192361812	pabC	CJA_1679	-	4-amino-4-deoxychorismate lyase
1636	 52.16	0	1939581..1940669	+	362	192362312	-	CJA_1680	-	Uncharacterized BCR, YceG family
1637	 49.63	0	1940795..1942531	+	578	192361969	glnS	CJA_1681	-	glutaminyl-tRNA synthetase
1638	 47.89	0	1942537..1943937	+	466	192361138	cysS	CJA_1682	-	cysteinyl-tRNA synthetase
1639	 43.08	-1	1943951..1944145	+	64	192359015	-	CJA_1683	-	hypothetical protein
1640	 50.31	0	1944463..1945275	-	270	192361942	-	CJA_1684	-	cytochrome C assembly protein
1641	 51.53	0	1945481..1946854	+	457	192361389	ffh	CJA_1685	-	signal recognition particle protein
1642	 48.70	0	1946919..1947341	-	140	192359850	-	CJA_1686	-	conserved hypothetical protein TIGR00149
1643	 46.56	-1	1947677..1948039	-	120	192362099	-	CJA_1687	-	type III effector HopPmaJ(Pto)
1644	 50.74	0	1948196..1949884	+	562	192361601	sfcA1	CJA_1688	-	NAD-dependent malic enzyme
1645	 46.32	-1	1949896..1950534	+	212	192360947	-	CJA_1689	-	yecA family protein subfamily
1646	 50.96	0	1950718..1951080	+	120	192361035	-	CJA_1690	-	hypothetical protein
1647	 48.68	0	1951186..1951791	+	201	192359942	-	CJA_1691	-	aldehyde dehydrogenase
1648	 52.42	0	1954148..1955326	+	392	192361509	fadA	CJA_1693	-	acetyl-CoA C-acyltransferase FadA
1649	 49.97	0	1955447..1956901	+	484	192360257	-	CJA_1694	-	hypothetical protein
1650	 48.48	0	1956973..1957236	+	87	192359447	-	CJA_1695	-	hypothetical protein
1651	 56.86	0	1957349..1957756	-	135	192361863	-	CJA_1696	-	hypothetical protein
1652	 50.25	0	1957749..1958351	-	200	192361112	lexA	CJA_1697	-	LexA repressor
1653	 51.41	0	1958427..1958780	+	117	192358901	-	CJA_1699	-	hypothetical protein
1654	 53.17	0	1958457..1958819	-	120	192359818	-	CJA_1698	-	putative lipoprotein
1655	 51.02	0	1958930..1959760	-	276	192359704	-	CJA_1700	-	oxidoreductase, short chain dehydrogenase/reductase family
1656	 51.47	0	1959896..1960303	+	135	192361805	-	CJA_1701	-	flagellar protein FliS
1657	 50.18	0	1960313..1960597	+	94	192360777	-	CJA_1702	-	hypothetical protein
1658	 50.77	0	1960720..1961109	+	129	192360151	-	CJA_1703	-	flagellar protein FliS
1659	 50.24	0	1961367..1962821	+	484	192360348	fleQ	CJA_1704	-	regulatory protein
1660	 47.22	0	1962965..1964116	+	383	192359413	-	CJA_1705	-	ISCja2, transposase
1661	 54.53	0	1964186..1965610	-	474	192362464	-	CJA_1706	-	Superfamily II DNA and RNA helicase
1662	 50.69	0	1965785..1967080	-	431	192361465	-	CJA_1707	-	bicyclomycin resistance protein
1663	 54.02	0	1967438..1968718	+	426	192359837	fleS	CJA_1708	-	two-component sensor
1664	 53.15	0	1968734..1970257	+	507	192359170	fleR	CJA_1709	-	transcriptional activator
1665	 47.09	0	1970288..1970476	-	62	192360062	-	CJA_1710	-	hypothetical protein
1666	 48.84	0	1970484..1970741	-	85	192362349	-	CJA_1711	-	hypothetical protein
1667	 52.80	0	1970740..1971114	+	124	192361742	fliE	CJA_1712	-	flagellar hook-basal body complex protein (FliE)
1668	 54.44	0	1971193..1972902	+	569	192359622	fliF	CJA_1713	-	flagellar M-ring protein FliF
1669	 53.01	0	1972931..1973926	+	331	192360504	fliG	CJA_1714	-	flagellar motor switch protein FliG
1670	 56.45	0	1973945..1974766	+	273	192361340	fliH	CJA_1715	-	Flagellar assembly protein FliH
1671	 59.40	+1	1974729..1976159	+	476	192362186	fliI	CJA_1716	-	flagellum-specific ATP synthase FliI
1672	 50.88	0	1976168..1976623	+	151	192359835	-	CJA_1717	-	putative flagellar protein FliJ
1673	 44.77	-1	1976839..1977144	+	101	192360682	-	CJA_1718	-	hypothetical protein
1674	 52.22	0	1977206..1978984	+	592	192359685	-	CJA_1719	-	response regulator
1675	 47.78	0	1979000..1979359	+	119	192360724	-	CJA_1720	-	Hpt domain protein
1676	 53.94	0	1979532..1980914	+	460	192362472	-	CJA_1721	-	putative flagellar hook-length control protein FliK
1677	 49.65	0	1981105..1981674	+	189	192359510	-	CJA_1722	-	Flagellar basal body-associated protein FliL
1678	 51.96	0	1981686..1982705	+	339	192360300	fliM	CJA_1723	-	flagellar motor switch protein FliM
1679	 50.25	0	1982695..1983096	+	133	192361158	fliN	CJA_1724	-	flagellar protein
1680	 50.63	0	1983144..1983779	+	211	192359151	-	CJA_1725	-	flagellar protein FliO
1681	 49.88	0	1983790..1984629	+	279	192359973	fliP	CJA_1726	-	Flagellar biosynthetic protein fliP
1682	 51.85	0	1984642..1984911	+	89	192359213	fliQ	CJA_1727	-	flagellar biosynthetic protein FliQ
1683	 47.58	0	1984919..1985704	+	261	192359985	fliR	CJA_1728	-	flagellar biosynthetic protein FliR
1684	 48.86	0	1985704..1986843	+	379	192360845	flhB	CJA_1729	-	flagellar biosynthetic protein FlhB
1685	 50.14	0	1986948..1987667	+	239	192361189	-	CJA_1730	-	hypothetical protein
1686	 48.47	0	1987906..1988493	-	195	192362492	-	CJA_1731	-	putative lipoprotein
1687	 43.18	-1	1988752..1989015	+	87	192358951	-	CJA_1732	-	hypothetical protein
1688	 47.62	0	1989063..1991246	+	727	192359763	-	CJA_1733	-	Response regulator receiver domain protein
1689	 45.19	-1	1991291..1992100	-	269	192361651	xth	CJA_1734	-	exodeoxyribonuclease III
1690	 47.19	0	1992170..1994320	-	716	192359176	prc	CJA_1735	-	tail-specific protease
1691	 50.16	0	1994568..1995512	-	314	192359953	-	CJA_1736	-	hypothetical protein
1692	 49.18	0	1995625..1996053	-	142	192360210	-	CJA_1737	-	hypothetical protein
1693	 47.47	0	1995877..1995975	+	32	192362178	-	CJA_1738	-	hypothetical protein
1694	 37.50	-2	1996196..1996339	-	47	192359621	-	CJA_1739	-	hypothetical protein
1695	 50.84	0	1996371..1997438	-	355	192359620	-	CJA_1740	-	phospho-2-dehydro-3-deoxyheptonate aldolase
1696	 51.72	0	1997706..1999913	+	735	192360384	-	CJA_1741	-	phospholipase, patatin family
1697	 46.88	0	2000001..2000753	-	250	192361204	-	CJA_1742	-	putative lipoprotein
1698	 53.09	0	2000797..2001717	-	306	192362059	-	CJA_1743	-	transcriptional regulator, LysR family
1699	 55.98	0	2001857..2003278	+	473	192360076	leuC	CJA_1744	-	3-isopropylmalate dehydratase, large subunit
1700	 49.38	0	2003291..2003938	+	215	192360888	leuD	CJA_1745	-	3-isopropylmalate dehydratase, small subunit
1701	 55.62	0	2003962..2005038	+	358	192359632	leuB	CJA_1746	-	3-isopropylmalate dehydrogenase
1702	 54.26	0	2005071..2006174	+	367	192360474	asd	CJA_1747	-	aspartate-semialdehyde dehydrogenase
1703	 53.59	0	2006536..2009595	+	1019	192360431	-	CJA_1748	-	hypothetical protein
1704	 55.89	0	2009671..2010570	+	299	192361259	truA	CJA_1749	-	tRNA pseudouridine synthase A
1705	 55.25	0	2010655..2011302	+	215	192359485	trpF	CJA_1750	-	N-(5'phosphoribosyl)anthranilate isomerase
1706	 56.40	0	2011306..2012532	+	408	192361834	trpB	CJA_1751	-	tryptophan synthase, beta subunit
1707	 57.16	0	2012599..2013408	+	269	192361186	trpA	CJA_1752	-	tryptophan synthase, alpha subunit
1708	 53.08	0	2013517..2014377	+	286	192360579	accD	CJA_1753	-	acetyl-CoA carboxylase, carboxyl transferase, beta subunit
1709	 55.76	0	2014386..2015678	+	430	192359076	folC	CJA_1754	-	folylpolyglutamate synthetase
1710	 55.50	0	2015696..2016286	+	196	192359303	-	CJA_1755	-	Sporulation related repeat family
1711	 53.64	0	2016417..2016938	+	173	192361113	cvpA	CJA_1756	-	CvpA family protein
1712	 53.74	0	2016990..2018513	+	507	192359978	purF	CJA_1757	-	amidophosphoribosyltransferase
1713	 53.95	0	2018557..2019783	+	408	192362427	metZ	CJA_1758	-	O-succinylhomoserine sulfhydrylase
1714	 50.55	0	2020211..2022115	+	634	192360864	-	CJA_1760	-	putative Hsp90 protein
1715	 51.61	0	2022232..2022696	+	154	192361953	mgsA	CJA_1761	-	methylglyoxal synthase
1716	 43.98	-1	2022999..2023214	+	71	192360401	-	CJA_1762	-	cold-shock domain family protein
1717	 52.96	0	2023277..2024122	-	281	192359912	-	CJA_1763	-	putative lipoprotein
1718	 52.07	0	2024182..2027736	-	1184	192358851	mfd	CJA_1764	-	transcription-repair coupling protein Mfd
1719	 53.94	0	2028304..2029647	+	447	192359833	nqrA	CJA_1765	-	NADH:ubiquinone oxidoreductase, Na(+)-translocating, A subunit
1720	 53.12	0	2029651..2030853	+	400	192358783	nqrB	CJA_1766	-	NADH:ubiquinone oxidoreductase, Na(+)-translocating, B subunit
1721	 47.62	0	2030846..2031622	+	258	192362189	nqrC	CJA_1767	-	NADH:ubiquinone oxidoreductase, Na(+)-translocating, C subunit
1722	 50.37	0	2031625..2032293	+	222	192361593	nqrD	CJA_1768	-	NADH:ubiquinone oxidoreductase, Na(+)-translocating, D subunit
1723	 49.92	0	2032293..2032901	+	202	192361014	nqrE	CJA_1769	-	NADH:ubiquinone oxidoreductase, Na(+)-translocating, E subunit
1724	 50.90	0	2032923..2034146	+	407	192359425	nqrF	CJA_1770	-	NADH:ubiquinone oxidoreductase, Na(+)-translocating, F subunit
1725	 50.96	0	2034237..2034497	+	86	192360276	-	CJA_1771	-	hypothetical protein
1726	 49.50	0	2034609..2036006	+	465	192361161	-	CJA_1772	-	soluble pyridine nucleotide transhydrogenase
1727	 48.22	0	2036100..2036408	-	102	192362400	-	CJA_1773	-	hypothetical protein
1728	 49.39	0	2036428..2037000	-	190	192359791	-	CJA_1774	-	hypothetical protein
1729	 53.18	0	2037067..2038371	+	434	192361053	-	CJA_1775	-	efflux ABC transporter, permease protein
1730	 54.13	0	2038381..2039082	+	233	192361922	-	CJA_1776	-	insulin-like growth factor I
1731	 52.62	0	2039079..2040317	+	412	192359404	-	CJA_1777	-	lipoprotein releasing system, permease protein
1732	 51.40	0	2040395..2042830	+	811	192360228	-	CJA_1778	-	DNA internalization-related competence protein ComEC/Rec2
1733	 48.71	0	2042916..2043611	+	231	192359531	-	CJA_1779	-	MotA/TolQ/ExbB proton channel family domain protein
1734	 52.11	0	2043624..2044049	+	141	192360658	-	CJA_1780	-	ExbD/TolR family protein
52.09	MEAN

5.42	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.