IslandPathversion 1.0

IslandPath Analysis: Cellvibrio japonicus Ueda107



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 52.09 STD DEV: 5.42
Cellvibrio japonicus Ueda107, complete genome - 1..4576573
3754 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1035	 50.91	0	1254399..1256162	+	587	192361798	gspA	CJA_1063	-	general secretion pathway protein a
1036	 54.79	0	1256162..1257028	+	288	192361081	-	CJA_1064	-	hypothetical protein
1037	 49.27	0	1257058..1257534	-	158	192360041	bfr	CJA_1065	-	bacterioferritin
1038	 49.22	0	1257688..1257945	-	85	192362318	-	CJA_1066	-	bacterioferritin-associated ferredoxin-related protein
1039	 53.07	0	1258249..1258851	+	200	192361205	-	CJA_1067	-	probable peroxidase
1040	 51.72	0	1259032..1259640	+	202	192360624	ung	CJA_1068	-	uracil-DNA glycosylase
1041	 47.72	0	1259961..1263080	+	1039	192359564	-	CJA_1069	-	putative TonB-dependent receptor
1042	 46.47	-1	1263166..1264665	+	499	192361347	-	CJA_1070	-	tryptophan halogenase
1043	 54.82	0	1265164..1266294	+	376	192360540	-	CJA_1071	-	phosphoserine aminotransferase
1044	 51.45	0	1266400..1267575	+	391	192359656	-	CJA_1072	-	D-isomer specific 2-hydroxyacid dehydrogenase
1045	 55.56	0	1267580..1267894	+	104	192361313	-	CJA_1073	-	hypothetical protein
1046	 54.83	0	1267866..1268507	+	213	192359075	-	CJA_1074	-	hydrolase, NUDIX family
1047	 48.13	0	1268838..1270466	+	542	192362139	fadD1	CJA_1075	-	long-chain-fatty-acid--CoA ligase
1048	 49.57	0	1270552..1271481	+	309	192360756	-	CJA_1076	-	hypothetical protein
1049	 49.69	0	1271490..1271966	+	158	192359952	-	CJA_1077	-	hypothetical protein
1050	 53.95	0	1271979..1273118	+	379	192361705	uvs083	CJA_1078	-	Uvs083
1051	 54.96	0	1273187..1273690	-	167	192360436	-	CJA_1079	-	hypothetical protein
1052	 55.18	0	1273674..1275440	-	588	192359000	cysI	CJA_1080	-	sulphite reductase
1053	 45.83	-1	1275443..1275562	+	39	192359821	-	CJA_1081	-	hypothetical protein
1054	 56.31	0	1275607..1276272	+	221	192361541	-	CJA_1082	-	ribosomal large subunit pseudouridine synthase A
1055	 53.97	0	1276334..1277467	+	377	192362394	-	CJA_1083	-	hypothetical protein
1056	 51.10	0	1277531..1278391	-	286	192359444	-	CJA_1084	-	Integral membrane protein DUF6 domain protein
1057	 55.84	0	1278624..1280276	-	550	192360277	-	CJA_1085	-	sodium:solute symporter family protein
1058	 57.01	0	1280276..1280596	-	106	192359757	-	CJA_1086	-	hypothetical protein
1059	 55.44	0	1280780..1281376	-	198	192361059	-	CJA_1087	-	DNA-binding response regulator, LuxR family
1060	 54.41	0	1281386..1282486	-	366	192362474	-	CJA_1088	-	two-component system sensor protein
1061	 49.12	0	1282685..1283197	+	170	192362209	-	CJA_1089	-	conserved hypothetical protein TIGR00645
1062	 56.59	0	1283277..1285151	-	624	192359192	-	CJA_1090	-	FAD binding domain protein
1063	 55.81	0	1285352..1286512	-	386	192362295	dapE	CJA_1091	-	succinyl-diaminopimelate desuccinylase
1064	 54.15	0	1286658..1287248	-	196	192359029	hspC2	CJA_1092	-	small heat shock protein
1065	 55.13	0	1287348..1287815	-	155	192360651	-	CJA_1093	-	16 kDa heat shock protein A
1066	 54.75	0	1288298..1289254	+	318	192361190	-	CJA_1094	-	ABC transporter domain protein
1067	 54.32	0	1289244..1292135	+	963	192360856	-	CJA_1095	-	hypothetical protein
1068	 52.35	0	1292151..1293149	+	332	192361740	-	CJA_1096	-	hypothetical protein
1069	 43.88	-1	1293198..1293434	-	78	192359210	-	CJA_1097	-	hypothetical protein
1070	 44.36	-1	1293431..1293811	-	126	192360035	-	CJA_1098	-	hypothetical protein
1071	 55.27	0	1293996..1294697	-	233	192361072	-	CJA_1099	-	conserved hypothetical protein TIGR01033
1072	 58.24	+1	1294762..1295793	-	343	192359735	dapD	CJA_1100	-	tetrahydrodipicolinate N-succinyltransferase
1073	 48.99	0	1295832..1296176	-	114	192360728	-	CJA_1101	-	Protein yffB
1074	 52.58	0	1296173..1296889	-	238	192360120	-	CJA_1102	-	endonuclease III
1075	 55.08	0	1296841..1298040	-	399	192359079	-	CJA_1103	-	aminotransferase, class I
1076	 52.65	0	1298071..1300788	-	905	192362270	glnD	CJA_1104	-	protein-P-II uridylyltransferase
1077	 54.67	0	1300861..1301652	-	263	192361188	map	CJA_1105	-	methionine aminopeptidase, type I
1078	 53.37	0	1301943..1302431	+	162	192360565	-	CJA_1106	-	hypothetical protein
1079	 55.50	0	1302483..1303109	+	208	192361632	-	CJA_1107	-	superoxide dismutase
1080	 53.75	0	1303109..1304029	+	306	192360798	-	CJA_1108	-	gufA protein
1081	 60.34	+1	1304097..1305314	-	405	192362286	uxuA	CJA_1109	-	mannonate dehydratase
1082	 52.09	0	1305699..1306439	+	246	192361500	rpsB	CJA_1110	-	ribosomal protein S2
1083	 53.38	0	1306564..1307436	+	290	192361153	tsf	CJA_1111	-	translation elongation factor Ts
1084	 55.58	0	1307571..1309094	+	507	192362481	-	CJA_1112	-	hypothetical protein
1085	 56.48	0	1309151..1309690	+	179	192359646	-	CJA_1113	-	hypothetical protein
1086	 53.74	0	1309813..1310547	+	244	192360684	pyrH	CJA_1114	-	uridylate kinase
1087	 53.64	0	1310652..1311104	+	150	192360685	frr	CJA_1115	-	ribosome recycling factor
1088	 55.60	0	1311223..1311972	+	249	192361948	uppS	CJA_1116	-	undecaprenyl diphosphate synthase
1089	 56.31	0	1311965..1312804	+	279	192359237	cdsA	CJA_1117	-	phosphatidate cytidylyltransferase
1090	 56.64	0	1312813..1314009	+	398	192360022	dxr	CJA_1118	-	1-deoxy-D-xylulose 5-phosphate reductoisomerase
1091	 52.77	0	1314036..1315409	+	457	192359199	-	CJA_1119	-	putative membrane-associated zinc metalloprotease
1092	 48.77	0	1315480..1318122	+	880	192359801	-	CJA_1120	-	outer membrane protein, bacterial surface antigen family
1093	 48.62	0	1318239..1318709	+	156	192359665	-	CJA_1121	-	putative outer membrane protein OmpH
1094	 54.09	0	1318728..1319753	+	341	192360259	lpxD	CJA_1122	-	UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase
1095	 46.80	0	1319788..1320225	+	145	192359935	fabZ	CJA_1123	-	beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabZ
1096	 49.16	0	1320300..1321070	+	256	192362392	lpxA	CJA_1124	-	acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase
1097	 50.91	0	1321138..1322292	+	384	192362074	lpx19A	CJA_1125	-	lipid-A-disaccharide synthase, putative, lpx19A
1098	 52.36	0	1322289..1322903	+	204	192358895	rnhB	CJA_1126	-	ribonuclease HII
1099	 53.03	0	1322930..1326463	+	1177	192360327	dnaE	CJA_1127	-	DNA polymerase III, alpha subunit
1100	 45.61	-1	1326631..1327086	+	151	192360989	-	CJA_1128	-	CBS domain protein
1101	 54.01	0	1327453..1328400	+	315	192361884	accA	CJA_1129	-	acetyl-CoA carboxylase, carboxyl transferase, alpha subunit
1102	 33.33	-2	1328634..1328726	+	30	192358980	-	CJA_1130	-	hypothetical protein
1103	 57.88	+1	1328865..1330025	-	386	192359218	lldD	CJA_1131	-	L-lactate dehydrogenase
1104	 56.06	0	1330234..1331544	+	436	192361229	fucP	CJA_1132	-	L-fucose permease
1105	 60.30	+1	1331541..1332419	+	292	192362289	-	CJA_1133	-	Amidohydrolase family superfamily
1106	 56.24	0	1332517..1333341	+	274	192359551	kdgR	CJA_1134	-	transcriptional regulator kdgR
1107	 59.75	+1	1333537..1334649	+	370	192359521	-	CJA_1135	-	D-threo-aldose 1-dehydrogenase-like protein
1108	 53.74	0	1334646..1334993	+	115	192360589	-	CJA_1136	-	hydrolase, UxaA family
1109	 55.01	0	1334990..1336207	+	405	192360842	uxaA	CJA_1137	-	hydrolase, UxaA family
1110	 52.40	0	1336281..1337009	+	242	192361927	-	CJA_1138	-	oxidoreductase UCPA
1111	 52.72	0	1337034..1337879	+	281	192362262	-	CJA_1139	-	putative fumarylacetoacetate hydrolase family protein
1112	 51.87	0	1337925..1341134	+	1069	192359054	cel3D	CJA_1140	-	putative 1,4-beta-D-glucan glucohydrolase cel3D
1113	 47.15	0	1341418..1341909	+	163	192359038	-	CJA_1141	-	hypothetical protein
1114	 49.62	0	1342050..1343780	+	576	192360106	-	CJA_1142	-	OmpA family protein
1115	 45.97	-1	1343825..1344196	-	123	192361218	-	CJA_1143	-	hypothetical protein
1116	 57.08	0	1344236..1345309	-	357	192362503	purK	CJA_1144	-	phosphoribosylaminoimidazole carboxylase, ATPase subunit
1117	 56.91	0	1345336..1345827	-	163	192360478	purE	CJA_1145	-	phosphoribosylaminoimidazole carboxylase, catalytic subunit
1118	 54.85	0	1346009..1346947	-	312	192359827	-	CJA_1146	-	sodium bicarbonate cotransporter
1119	 53.47	0	1347009..1348016	+	335	192360757	rbcR	CJA_1147	-	rubisco operon transcriptional regulator
1120	 53.59	0	1348030..1349100	-	356	192362094	-	CJA_1148	-	apbE family protein
1121	 57.00	0	1349232..1350959	+	575	192362147	sul1	CJA_1149	-	sulfate permease family protein
1122	 52.58	0	1350962..1351912	-	316	192362021	rdgC	CJA_1150	-	recombinaison associated protein
1123	 55.88	0	1352051..1352671	-	206	192361350	fklB	CJA_1151	-	peptidylprolyl cis-trans isomerase
1124	 53.44	0	1352732..1353895	-	387	192360560	-	CJA_1152	-	hypothetical protein
1125	 52.57	0	1353973..1354944	+	323	192358792	-	CJA_1153	-	hypothetical protein
1126	 56.06	0	1355128..1356984	-	618	192362445	feoB	CJA_1154	-	ferrous iron transport protein B
1127	 55.02	0	1357033..1357341	-	102	192360969	-	CJA_1155	-	ferrous iron transport protein
1128	 50.06	0	1357591..1358439	+	282	192359917	-	CJA_1156	-	hypothetical protein
1129	 48.48	0	1358777..1361404	+	875	192360309	-	CJA_1157	-	TonB-dependent receptor
1130	 47.19	0	1361484..1363013	+	509	192359265	-	CJA_1159	-	tryptophan halogenase
1131	 46.22	-1	1363010..1363630	-	206	192361311	-	CJA_1158	-	hypothetical protein
1132	 54.65	0	1364143..1365066	+	307	192362337	-	CJA_1160	-	BadF/BadG/BcrA/BcrD ATPase family superfamily
1133	 50.75	0	1365168..1366499	+	443	192358969	gluP	CJA_1161	-	glucose/galactose transporter
1134	 50.33	0	1366462..1367661	+	399	192359631	-	CJA_1162	-	hypothetical protein
52.09	MEAN

5.42	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.