IslandPathversion 1.0

IslandPath Analysis: Cellvibrio japonicus Ueda107



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 52.09 STD DEV: 5.42
Cellvibrio japonicus Ueda107, complete genome - 1..4576573
3754 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
997	 55.24	0	1206833..1207576	+	247	192359174	gt51A	CJA_1025	-	murein polymerase, putative, gt51A
998	 55.31	0	1207727..1207999	+	90	192360014	-	CJA_1026	-	hypothetical protein
999	 58.03	+1	1208039..1209844	+	601	192360897	aspS	CJA_1027	-	aspartyl-tRNA synthetase
1000	 55.65	0	1209946..1210689	+	247	192361730	-	CJA_1028	-	conserved hypothetical protein TIGR01033
1001	 54.65	0	1210727..1211317	+	196	192362195	ruvC	CJA_1029	-	crossover junction endodeoxyribonuclease RuvC
1002	 52.43	0	1211340..1211957	+	205	192360858	ruvA	CJA_1030	-	Holliday junction DNA helicase RuvA
1003	 54.66	0	1212009..1213049	+	346	192359396	ruvB	CJA_1031	-	Holliday junction DNA helicase RuvB
1004	 51.09	0	1213386..1214072	+	228	192362359	tolQ-2	CJA_1032	-	tolQ protein
1005	 46.80	0	1214104..1214541	+	145	192361136	tolR	CJA_1033	-	TolR protein
1006	 49.52	0	1214559..1215398	+	279	192360351	-	CJA_1034	-	putative biopolymer transport protein TolA
1007	 48.52	0	1215395..1216678	+	427	192362452	tolB	CJA_1035	-	tolB protein
1008	 50.97	0	1216730..1217194	+	154	192361426	-	CJA_1036	-	outer membrane protein
1009	 46.69	0	1217210..1217965	+	251	192360793	-	CJA_1037	-	putative 34 kDa outer membrane protein
1010	 48.24	0	1218585..1219832	+	415	192359786	-	CJA_1038	-	hypothetical protein
1011	 49.73	0	1219864..1221138	-	424	192360663	-	CJA_1039	-	hypothetical protein
1012	 51.03	0	1221294..1221875	-	193	192360674	-	CJA_1040	-	inactive regulatory protein
1013	 52.67	0	1221979..1223007	-	342	192361765	ndpA	CJA_1041	-	nucleoid-associated protein NdpA superfamily
1014	 54.72	0	1223084..1223443	+	119	192359516	-	CJA_1042	-	endoribonuclease L-PSP family protein
1015	 55.26	0	1223571..1226051	+	826	192360572	-	CJA_1044	-	acetyltransferase, GNAT family
1016	 53.26	0	1226046..1227074	-	342	192361251	hda	CJA_1043	-	histone deacetylase family protein
1017	 53.59	0	1227045..1229216	+	723	192359127	-	CJA_1045	-	sulfatase
1018	 51.56	0	1229290..1231023	+	577	192359959	-	CJA_1046	-	hypothetical protein
1019	 49.67	0	1231115..1231420	+	101	192360828	-	CJA_1047	-	hypothetical protein
1020	 52.99	0	1231469..1232221	+	250	192361652	-	CJA_1048	-	hypothetical protein
1021	 52.12	0	1232236..1233747	-	503	192359141	rebH	CJA_1049	-	tryptophan halogenase
1022	 53.47	0	1233842..1236568	-	908	192361210	-	CJA_1050	-	TonB-dependent receptor
1023	 54.93	0	1236852..1238300	-	482	192358817	-	CJA_1051	-	amino acid permease
1024	 50.03	0	1238613..1240043	-	476	192359949	-	CJA_1052	-	hypothetical protein
1025	 47.06	0	1240264..1240365	-	33	192360978	-	CJA_1053	-	hypothetical protein
1026	 59.12	+1	1240385..1242862	+	825	192362001	-	CJA_1054	-	hypothetical protein
1027	 59.59	+1	1242834..1244189	+	451	192359298	-	CJA_1055	-	hypothetical protein
1028	 57.53	+1	1244265..1245566	+	433	192360434	-	CJA_1056	-	putative ankyrin G
1029	 49.00	0	1245563..1246060	+	165	192361513	cycP	CJA_1057	-	cytochrome c''
1030	 52.65	0	1246064..1246741	+	225	192360713	cybP	CJA_1058	-	CybP
1031	 55.52	0	1246757..1247635	+	292	192361917	-	CJA_1059	-	putative hydrolase
1032	 54.44	0	1247737..1249830	-	697	192360734	-	CJA_1060	-	translation elongation factor G
1033	 57.04	0	1250068..1252977	-	969	192360628	gcvP	CJA_1061	-	glycine dehydrogenase
1034	 57.97	+1	1253177..1254361	+	394	192358921	-	CJA_1062	-	metabolite transport protein-like protein
1035	 50.91	0	1254399..1256162	+	587	192361798	gspA	CJA_1063	-	general secretion pathway protein a
1036	 54.79	0	1256162..1257028	+	288	192361081	-	CJA_1064	-	hypothetical protein
1037	 49.27	0	1257058..1257534	-	158	192360041	bfr	CJA_1065	-	bacterioferritin
1038	 49.22	0	1257688..1257945	-	85	192362318	-	CJA_1066	-	bacterioferritin-associated ferredoxin-related protein
1039	 53.07	0	1258249..1258851	+	200	192361205	-	CJA_1067	-	probable peroxidase
1040	 51.72	0	1259032..1259640	+	202	192360624	ung	CJA_1068	-	uracil-DNA glycosylase
1041	 47.72	0	1259961..1263080	+	1039	192359564	-	CJA_1069	-	putative TonB-dependent receptor
1042	 46.47	-1	1263166..1264665	+	499	192361347	-	CJA_1070	-	tryptophan halogenase
1043	 54.82	0	1265164..1266294	+	376	192360540	-	CJA_1071	-	phosphoserine aminotransferase
1044	 51.45	0	1266400..1267575	+	391	192359656	-	CJA_1072	-	D-isomer specific 2-hydroxyacid dehydrogenase
1045	 55.56	0	1267580..1267894	+	104	192361313	-	CJA_1073	-	hypothetical protein
1046	 54.83	0	1267866..1268507	+	213	192359075	-	CJA_1074	-	hydrolase, NUDIX family
1047	 48.13	0	1268838..1270466	+	542	192362139	fadD1	CJA_1075	-	long-chain-fatty-acid--CoA ligase
1048	 49.57	0	1270552..1271481	+	309	192360756	-	CJA_1076	-	hypothetical protein
1049	 49.69	0	1271490..1271966	+	158	192359952	-	CJA_1077	-	hypothetical protein
1050	 53.95	0	1271979..1273118	+	379	192361705	uvs083	CJA_1078	-	Uvs083
1051	 54.96	0	1273187..1273690	-	167	192360436	-	CJA_1079	-	hypothetical protein
1052	 55.18	0	1273674..1275440	-	588	192359000	cysI	CJA_1080	-	sulphite reductase
1053	 45.83	-1	1275443..1275562	+	39	192359821	-	CJA_1081	-	hypothetical protein
1054	 56.31	0	1275607..1276272	+	221	192361541	-	CJA_1082	-	ribosomal large subunit pseudouridine synthase A
1055	 53.97	0	1276334..1277467	+	377	192362394	-	CJA_1083	-	hypothetical protein
1056	 51.10	0	1277531..1278391	-	286	192359444	-	CJA_1084	-	Integral membrane protein DUF6 domain protein
1057	 55.84	0	1278624..1280276	-	550	192360277	-	CJA_1085	-	sodium:solute symporter family protein
1058	 57.01	0	1280276..1280596	-	106	192359757	-	CJA_1086	-	hypothetical protein
1059	 55.44	0	1280780..1281376	-	198	192361059	-	CJA_1087	-	DNA-binding response regulator, LuxR family
1060	 54.41	0	1281386..1282486	-	366	192362474	-	CJA_1088	-	two-component system sensor protein
1061	 49.12	0	1282685..1283197	+	170	192362209	-	CJA_1089	-	conserved hypothetical protein TIGR00645
1062	 56.59	0	1283277..1285151	-	624	192359192	-	CJA_1090	-	FAD binding domain protein
1063	 55.81	0	1285352..1286512	-	386	192362295	dapE	CJA_1091	-	succinyl-diaminopimelate desuccinylase
1064	 54.15	0	1286658..1287248	-	196	192359029	hspC2	CJA_1092	-	small heat shock protein
1065	 55.13	0	1287348..1287815	-	155	192360651	-	CJA_1093	-	16 kDa heat shock protein A
1066	 54.75	0	1288298..1289254	+	318	192361190	-	CJA_1094	-	ABC transporter domain protein
1067	 54.32	0	1289244..1292135	+	963	192360856	-	CJA_1095	-	hypothetical protein
1068	 52.35	0	1292151..1293149	+	332	192361740	-	CJA_1096	-	hypothetical protein
1069	 43.88	-1	1293198..1293434	-	78	192359210	-	CJA_1097	-	hypothetical protein
1070	 44.36	-1	1293431..1293811	-	126	192360035	-	CJA_1098	-	hypothetical protein
1071	 55.27	0	1293996..1294697	-	233	192361072	-	CJA_1099	-	conserved hypothetical protein TIGR01033
1072	 58.24	+1	1294762..1295793	-	343	192359735	dapD	CJA_1100	-	tetrahydrodipicolinate N-succinyltransferase
1073	 48.99	0	1295832..1296176	-	114	192360728	-	CJA_1101	-	Protein yffB
1074	 52.58	0	1296173..1296889	-	238	192360120	-	CJA_1102	-	endonuclease III
1075	 55.08	0	1296841..1298040	-	399	192359079	-	CJA_1103	-	aminotransferase, class I
1076	 52.65	0	1298071..1300788	-	905	192362270	glnD	CJA_1104	-	protein-P-II uridylyltransferase
1077	 54.67	0	1300861..1301652	-	263	192361188	map	CJA_1105	-	methionine aminopeptidase, type I
1078	 53.37	0	1301943..1302431	+	162	192360565	-	CJA_1106	-	hypothetical protein
1079	 55.50	0	1302483..1303109	+	208	192361632	-	CJA_1107	-	superoxide dismutase
1080	 53.75	0	1303109..1304029	+	306	192360798	-	CJA_1108	-	gufA protein
1081	 60.34	+1	1304097..1305314	-	405	192362286	uxuA	CJA_1109	-	mannonate dehydratase
1082	 52.09	0	1305699..1306439	+	246	192361500	rpsB	CJA_1110	-	ribosomal protein S2
1083	 53.38	0	1306564..1307436	+	290	192361153	tsf	CJA_1111	-	translation elongation factor Ts
1084	 55.58	0	1307571..1309094	+	507	192362481	-	CJA_1112	-	hypothetical protein
1085	 56.48	0	1309151..1309690	+	179	192359646	-	CJA_1113	-	hypothetical protein
1086	 53.74	0	1309813..1310547	+	244	192360684	pyrH	CJA_1114	-	uridylate kinase
1087	 53.64	0	1310652..1311104	+	150	192360685	frr	CJA_1115	-	ribosome recycling factor
1088	 55.60	0	1311223..1311972	+	249	192361948	uppS	CJA_1116	-	undecaprenyl diphosphate synthase
1089	 56.31	0	1311965..1312804	+	279	192359237	cdsA	CJA_1117	-	phosphatidate cytidylyltransferase
1090	 56.64	0	1312813..1314009	+	398	192360022	dxr	CJA_1118	-	1-deoxy-D-xylulose 5-phosphate reductoisomerase
1091	 52.77	0	1314036..1315409	+	457	192359199	-	CJA_1119	-	putative membrane-associated zinc metalloprotease
1092	 48.77	0	1315480..1318122	+	880	192359801	-	CJA_1120	-	outer membrane protein, bacterial surface antigen family
1093	 48.62	0	1318239..1318709	+	156	192359665	-	CJA_1121	-	putative outer membrane protein OmpH
1094	 54.09	0	1318728..1319753	+	341	192360259	lpxD	CJA_1122	-	UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase
1095	 46.80	0	1319788..1320225	+	145	192359935	fabZ	CJA_1123	-	beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabZ
1096	 49.16	0	1320300..1321070	+	256	192362392	lpxA	CJA_1124	-	acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase
52.09	MEAN

5.42	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.