version 1.0
Candidatus Pelagibacter ubique HTCC1062, complete genome - 1..1308759 1354 proteins Pos %G+C SD Location Strand Length PID Gene Synonym Code Product 307 28.79 0 306635..307558 - 307 71083016 hemC SAR11_0310 - hydroxymethylbilane synthase 308 33.15 0 307618..308691 + 357 71083017 ygjD SAR11_0311 - O-sialoglycoprotein endopeptidase 309 22.81 -1 308772..309617 + 281 71083018 - SAR11_0312 - sulfotransferase domain-containing protein 310 31.16 0 309643..310056 + 137 71083019 - SAR11_0313 - hypothetical protein 311 33.48 +1 310070..312115 + 681 71083020 acsA SAR11_0314 - acetyl-CoA synthase 312 27.56 0 312112..312735 - 207 71083021 - SAR11_0315 - potential esterase 313 37.16 +1 312873..313133 + 86 71083022 - SAR11_1723 - hypothetical protein 314 39.30 +2 313133..314941 + 602 71083023 yjcG SAR11_0316 - SSF family Na(+)/solute symporter 315 27.45 0 315020..315376 + 118 71083024 - SAR11_1724 - YGGT family protein 316 28.03 0 315405..316064 + 219 71083025 rpe SAR11_0317 - ribulose-phosphate 3-epimerase 317 24.83 -1 316069..317679 + 536 71083026 - SAR11_0318 - hypothetical protein 318 27.67 0 317679..319214 + 511 71083027 purH SAR11_0319 - bifunctional purine biosynthesis protein 319 22.90 -1 319204..319548 - 114 71083028 phhB SAR11_0321 - putative pterin-4-alpha-carbinolamine dehydratase 320 26.32 0 319743..320384 + 213 71083029 - SAR11_0322 - hypothetical protein 321 20.72 -2 320387..321520 - 377 71083030 ubiH SAR11_0323 - putative ubiquinone biosynthesis monooxgenase COQ6 322 30.37 0 321546..323636 + 696 71083031 ftsK SAR11_0324 - cell division protein 323 21.62 -1 323636..324190 + 184 71083032 - SAR11_0325 - Outer membrane lipoprotein carrier protein 324 27.98 0 324191..324694 - 167 71083033 - SAR11_0326 - putative acetyltransferase 325 29.23 0 324691..325056 - 121 71083034 - SAR11_0327 - histidine triad (HIT) protein 326 29.41 0 325056..325361 - 101 71083035 hisE SAR11_0328 - phosphoribosyl-ATP diphosphatase 327 34.26 +1 325364..326119 - 251 71083036 hisF SAR11_0329 - imidazole glycerol phosphate synthase subunit of hisF 328 28.75 0 326112..326831 - 239 71083037 hisA SAR11_0330 - phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase 329 29.35 0 326834..327460 - 208 71083038 hisH SAR11_0331 - imidazole glycerol phosphate synthase subunit of hisH 330 31.30 0 327466..328056 - 196 71083039 hisB SAR11_0332 - imidazoleglycerol-phosphate dehydratase 331 34.88 +1 328148..328663 + 171 71083040 hslV SAR11_0333 - ATP-dependent protease peptidase subunit 332 30.99 0 328663..330030 + 455 71083041 hslU SAR11_0334 - ATP-dependent protease ATP-binding subunit 333 22.61 -1 330020..330541 - 173 71083042 - SAR11_0335 - Smr (small MutS related) protein 334 27.44 0 330542..331135 - 197 71083043 - SAR11_0336 - translocase 335 29.31 0 331194..331616 + 140 71083044 fxsA SAR11_0337 - cytoplasmic membrane protein 336 24.59 -1 331600..332022 + 140 71083045 secB SAR11_0338 - protein export chaperone 337 28.87 0 332015..332686 - 223 71083046 dnaQ SAR11_0339 - DNA polymerase III 338 19.12 -2 332688..333257 - 189 71083047 coaE SAR11_0340 - dephospho-CoA kinase 339 25.56 0 333254..334051 - 265 71083048 aroE SAR11_0341 - shikimate 5-dehydrogenase 340 28.74 0 334048..334635 - 195 71083049 orfE SAR11_0342 - Maf-like protein 341 29.09 0 334628..335452 - 274 71083050 - SAR11_0343 - hypothetical protein 342 26.54 0 335797..336738 + 313 71083051 hemE SAR11_0344 - uroporphyrinogen decarboxylase 343 31.40 0 336739..337773 + 344 71083052 hemH SAR11_0346 - ferrochelatase 344 24.14 -1 337766..338200 + 144 71083053 - SAR11_0347 - cytochrome functioning/assembly related protein 345 33.88 +1 338267..339535 + 422 71083054 rho SAR11_0348 - transcription termination factor Rho 346 24.01 -1 339853..341526 + 557 71083055 - SAR11_0349 - O-linked N-acetylglucosamine transferase 347 30.03 0 341586..342917 + 443 71083056 trmE SAR11_0350 - tRNA modification GTPase 348 32.64 0 343083..344954 + 623 71083057 gidA SAR11_0351 - tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA 349 23.21 -1 344954..345595 + 213 71083058 gidB SAR11_0352 - glucose inhibited division protein 350 34.84 +1 345604..346398 + 264 71083059 - SAR11_0353 - ParA family ATPase for plasmid partitioning and other plasmid related functions 351 28.03 0 346398..347246 + 282 71083060 parB SAR11_0354 - chromosome partitioning protein 352 22.69 -1 347236..348231 - 331 71083061 holA SAR11_0355 - DNA-directed DNA polymerase III 353 23.66 -1 348228..348692 - 154 71083062 - SAR11_0356 - hypothetical protein 354 29.74 0 348696..351230 - 844 71083063 leuS SAR11_0357 - leucyl-tRNA synthetase 355 30.29 0 351261..351818 - 185 71083064 - SAR11_0358 - hypothetical protein 356 38.59 +2 352028..353017 + 329 71083065 - SAR11_0359 - putative porin 357 23.76 -1 353054..353596 - 180 71083066 - SAR11_0360 - thiamine monophosphate synthase 358 27.34 0 353591..354241 + 216 71083067 yggS SAR11_0361 - hypothetical protein 359 25.56 0 354238..354726 - 162 71083068 - SAR11_0362 - hypothetical protein 360 19.59 -2 354747..355328 + 193 71083069 - SAR11_0363 - Bipartite response regulator 361 30.54 0 355334..356263 - 309 71083070 frk SAR11_0364 - fructokinase 362 30.58 0 356265..356918 - 217 71083071 nth SAR11_0365 - endonuclease III 363 27.28 0 356918..357694 - 258 71083072 dapB SAR11_0366 - dihydrodipicolinate reductase 364 35.54 +1 357731..358861 - 376 71083073 - SAR11_0367 - chaperone protein 365 34.00 +1 358894..360837 - 647 71083074 dnaK SAR11_0368 - chaperone protein 366 27.81 0 360900..361352 - 150 71083075 grpE SAR11_0369 - GrpE protein (HSP-70 cofactor) 367 26.70 0 361572..362174 + 200 71083076 - SAR11_0370 - HAM1-like protein 368 26.48 0 362158..363309 - 383 71083077 - SAR11_0371 - transmembrane receptor 369 25.93 0 363342..364205 + 287 71083078 - SAR11_0372 - methylase or methyltransferase 370 27.61 0 364195..364788 + 197 71083079 - SAR11_0374 - phospholipid-binding domain-containing protein 371 33.33 0 364785..367073 - 762 162286707 maeB SAR11_0375 - malic enzyme 372 25.74 0 367124..368650 + 508 71083081 mviN SAR11_0376 - virulence factor MVIN-like 373 28.24 0 368652..369653 + 333 71083082 trpS SAR11_0377 - tryptophanyl-tRNA synthetase 374 30.20 0 369707..370249 + 180 71083083 - SAR11_0378 - NifU-like domain-containing protein 375 27.42 0 370252..371367 + 371 71083084 bax SAR11_0379 - Bax protein (hydrolyses peptidoglycan) 376 26.82 0 371364..372284 - 306 71083085 cda1 SAR11_0380 - polysaccharide deacetylase 377 21.45 -1 372370..372756 + 128 71083086 - SAR11_0381 - hypothetical protein 378 29.44 0 372766..373176 + 136 71083087 fur SAR11_0382 - ferric uptake regulation protein 379 27.37 0 373181..374521 + 446 71083088 miaB SAR11_0383 - tRNA-i(6)A37 modification enzyme 380 28.84 0 374524..375525 + 333 71083089 phoH SAR11_0384 - PhoH-like protein 381 19.91 -2 375518..375979 + 153 71083090 - SAR11_0385 - hypothetical protein 382 23.37 -1 375981..377525 + 514 71083091 lnt SAR11_0386 - apolipoprotein N-acyltransferase (copper homeostasis protein) 383 33.76 +1 377518..378687 + 389 71083092 metK SAR11_0387 - S-adenosylmethionine synthetase 384 30.57 0 378786..380339 + 517 71083093 nusA SAR11_0388 - transcription termination factor 385 33.70 +1 380350..382554 + 734 71083094 infB SAR11_0389 - protein translation initiation factor 2 386 29.00 0 382554..382922 + 122 71083095 rbfA SAR11_0390 - ribosome-binding factor A 387 25.70 0 382936..383184 + 82 71083096 - SAR11_0391 - ribosomal protein S15 388 34.68 +1 383206..385278 + 690 71083097 pnp SAR11_0392 - polynucleotide phosphorylase/polyadenylase 389 20.98 -2 385353..386048 + 231 71083098 - SAR11_0393 - putative SAM-dependent methyltransferase 390 33.59 +1 386111..386503 - 130 71083099 - SAR11_0394 - hypothetical protein 391 34.36 +1 386597..387373 - 258 71083100 fabI SAR11_0395 - enoyl-[acyl-carrier-protein] reductase (NADH2) 392 36.39 +1 387383..388594 - 403 71083101 fabB SAR11_0396 - 3-oxoacyl-[acyl-carrier-protein] synthase 393 37.13 +1 388594..389094 - 166 71083102 fabA SAR11_0397 - 3-hydroxydecanoyl-(acyl carrier protein) dehydratase 394 25.87 0 389168..389596 + 142 71083103 - SAR11_0398 - ferric uptake regulator family protein 395 37.89 +2 389701..390117 + 138 71083104 rbr SAR11_0399 - rubrerythrin 396 32.81 0 390175..391506 + 443 71083105 glpC SAR11_0400 - anaerobic glycerol-3-phosphate dehydrogenase subunit C 397 29.80 0 391509..392102 + 197 71083106 - SAR11_0401 - hypothetical protein 398 23.56 -1 392095..392544 - 149 71083107 - SAR11_0402 - hypothetical protein 399 24.87 -1 392541..393296 - 251 71083108 moeB SAR11_0403 - molybdopterin biosynthesis protein 400 34.75 +1 393293..393646 - 117 71083109 dut SAR11_0404 - deoxyuridine 5'-triphosphate nucleotidohydrolase 401 28.44 0 393737..394942 - 401 71083110 dfp SAR11_0405 - phosphopantothenoylcysteine decarboxylase 402 30.85 0 394951..396318 - 455 71083111 aarF SAR11_0406 - ubiquinone biosynthesis protein 403 28.09 0 396519..397223 - 234 71083112 ubiE SAR11_0407 - ubiquinone/menaquinone biosynthesis methyltransferase 404 23.26 -1 397259..398122 + 287 71083113 mutM SAR11_0408 - formamidopyrimidine-DNA glycosylase 405 30.27 0 398173..398433 + 86 71083114 rpsT SAR11_0409 - ribosomal protein S20 406 26.59 0 398915..400249 + 444 71083115 dnaA SAR11_0410 - chromosomal replication initiator protein 29.30 MEAN 4.13 STD DEV
Last Updated: Dec 04, 2008
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.
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