IslandPathversion 1.0

IslandPath Analysis: Desulfococcus oleovorans Hxd3



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 56.47 STD DEV: 5.93
Candidatus Desulfococcus oleovorans Hxd3, complete genome - 1..3944167
3265 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
393	 52.60	0	453039..453884	+	281	158520410	-	Dole_0393	-	hypothetical protein
394	 61.50	0	453936..455579	+	547	158520411	-	Dole_0394	-	GH3 auxin-responsive promoter
395	 58.30	0	455692..457065	+	457	158520412	-	Dole_0395	-	hypothetical protein
396	 55.00	0	457317..458156	+	279	158520413	-	Dole_0396	-	hypothetical protein
397	 58.57	0	458313..458954	+	213	158520414	-	Dole_0397	-	hypothetical protein
398	 61.73	0	459063..459893	-	276	158520415	-	Dole_0398	-	aldo/keto reductase family oxidoreductase
399	 61.64	0	460029..461102	+	357	158520416	-	Dole_0399	-	FAD dependent oxidoreductase
400	 60.73	0	461188..462096	+	302	158520417	-	Dole_0400	-	periplasmic solute binding protein
401	 61.76	0	462093..462866	+	257	158520418	-	Dole_0401	-	ABC transporter-related protein
402	 62.65	+1	462871..463692	+	273	158520419	-	Dole_0402	-	ABC-3 protein
403	 50.15	-1	464078..464404	-	108	158520420	-	Dole_0403	-	hypothetical protein
404	 62.73	+1	464425..465897	-	490	158520421	-	Dole_0404	-	methyltransferase GidB
405	 63.58	+1	465921..466697	+	258	158520422	-	Dole_0405	-	pseudouridine synthase
406	 61.09	0	466691..467569	+	292	158520423	-	Dole_0406	-	hypothetical protein
407	 62.47	+1	467448..469235	-	595	158520424	-	Dole_0407	-	radical SAM domain-containing protein
408	 58.61	0	469645..470103	+	152	158520425	-	Dole_0408	-	hypothetical protein
409	 59.40	0	470225..471601	+	458	158520426	-	Dole_0409	-	hypothetical protein
410	 52.08	0	471818..472009	+	63	158520427	-	Dole_0410	-	hypothetical protein
411	 57.67	0	472016..472393	+	125	158520428	-	Dole_0411	-	PilT domain-containing protein
412	 60.68	0	472786..474171	+	461	158520429	-	Dole_0412	-	magnesium transporter
413	 64.44	+1	474524..475873	+	449	158520430	-	Dole_0413	-	MATE efflux family protein
414	 61.59	0	476184..477779	+	531	158520431	-	Dole_0414	-	peptide chain release factor 3
415	 63.17	+1	477923..479095	-	390	158520432	-	Dole_0415	-	filamentation induced by cAMP protein Fic
416	 58.16	0	479304..480314	-	336	158520433	-	Dole_0416	-	filamentation induced by cAMP protein Fic
417	 55.87	0	480667..482046	+	459	158520434	-	Dole_0417	-	magnesium transporter
418	 48.87	-1	482231..482539	+	102	158520435	-	Dole_0418	-	hypothetical protein
419	 49.11	-1	482627..483076	+	149	158520436	-	Dole_0419	-	hypothetical protein
420	 53.19	0	483154..483702	+	182	158520437	-	Dole_0420	-	hypothetical protein
421	 55.08	0	484267..486432	-	721	158520438	-	Dole_0421	-	heavy metal translocating P-type ATPase
422	 49.31	-1	486450..487250	-	266	158520439	-	Dole_0422	-	metallophosphoesterase
423	 52.52	0	487247..489253	-	668	158520440	-	Dole_0423	-	serine/threonine protein kinase
424	 47.39	-1	489253..489558	-	101	158520441	-	Dole_0424	-	hypothetical protein
425	 57.53	0	490042..490413	-	123	158520442	-	Dole_0425	-	zinc-resistance associated protein
426	 52.14	0	490723..492519	+	598	158520443	-	Dole_0426	-	signal transduction histidine kinase, nitrogen specific, NtrB
427	 52.65	0	492516..493892	+	458	158520444	-	Dole_0427	-	two component, sigma54 specific, Fis family transcriptional regulator
428	 58.97	0	493970..494632	+	220	158520445	-	Dole_0428	-	peptidoglycan-binding LysM
429	 52.74	0	494943..495416	+	157	158520446	-	Dole_0429	-	zinc-resistance associated protein
430	 45.63	-1	495853..496218	+	121	158520447	-	Dole_0430	-	hypothetical protein
431	 53.16	0	496237..497820	+	527	158520448	-	Dole_0431	-	Bilirubin oxidase
432	 57.26	0	498097..499956	-	619	158520449	-	Dole_0432	-	type III restriction protein res subunit
433	 55.72	0	499953..500756	-	267	158520450	-	Dole_0433	-	hypothetical protein
434	 57.78	0	500753..502417	-	554	158520451	-	Dole_0434	-	alkaline phosphatase domain-containing protein
435	 54.87	0	502435..503460	+	341	158520452	-	Dole_0435	-	hypothetical protein
436	 64.04	+1	504223..505173	-	316	158520453	-	Dole_0436	-	hypothetical protein
437	 59.39	0	505177..505959	-	260	158520454	-	Dole_0437	-	hypothetical protein
438	 59.80	0	505956..506567	-	203	158520455	-	Dole_0438	-	hypothetical protein
439	 58.29	0	506560..507633	-	357	158520456	-	Dole_0439	-	deoxyguanosinetriphosphate triphosphohydrolase-like protein
440	 59.85	0	508158..510020	+	620	158520457	-	Dole_0440	-	thiamine pyrophosphate binding domain-containing protein
441	 63.37	+1	510070..510675	+	201	158520458	-	Dole_0441	-	indolepyruvate ferredoxin oxidoreductase
442	 42.56	-2	511044..511238	+	64	158520459	-	Dole_0442	-	hypothetical protein
443	 41.74	-2	511235..511591	+	118	158520460	-	Dole_0443	-	HicB family protein
444	 50.68	0	511883..512101	+	72	158520461	-	Dole_0444	-	hypothetical protein
445	 30.51	-2	513192..513581	+	129	158520462	-	Dole_0445	-	hypothetical protein
446	 39.00	-2	513719..514300	+	193	158520463	-	Dole_0446	-	Cro-like protein
447	 41.88	-2	514385..514981	+	198	158520464	-	Dole_0447	-	hypothetical protein
448	 60.47	0	515117..517117	-	666	158520465	-	Dole_0448	-	exoribonuclease II
449	 56.13	0	517312..517833	+	173	158520466	-	Dole_0449	-	hypothetical protein
450	 55.49	0	517894..518922	+	342	158520467	-	Dole_0450	-	nitrate reductase gamma subunit
451	 58.06	0	518923..520572	+	549	158520468	-	Dole_0451	-	4Fe-4S ferredoxin, iron-sulfur binding
452	 51.79	0	520562..520951	+	129	158520469	-	Dole_0452	-	cytochrome c family protein
453	 60.79	0	520951..521784	+	277	158520470	-	Dole_0453	-	4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
454	 58.29	0	521806..522975	+	389	158520471	-	Dole_0454	-	polysulphide reductase NrfD
455	 49.31	-1	523090..523884	-	264	158520472	-	Dole_0455	-	methyltransferase type 11
456	 58.66	0	523994..525079	-	361	158520473	-	Dole_0456	-	4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
457	 56.84	0	525097..525717	-	206	158520474	-	Dole_0457	-	TetR family transcriptional regulator
458	 58.07	0	525875..526840	-	321	158520475	-	Dole_0458	-	methylenetetrahydrofolate reductase
459	 53.12	0	526887..527270	-	127	158520476	-	Dole_0459	-	hmc operon protein 6
460	 57.85	0	527316..527984	-	222	158520477	-	Dole_0460	-	hypothetical protein
461	 58.00	0	528005..528685	-	226	158520478	-	Dole_0461	-	hypothetical protein
462	 52.70	0	528716..529123	-	135	158520479	-	Dole_0462	-	cytochrome c class III
463	 51.89	0	529533..529850	+	105	158520480	-	Dole_0463	-	DsrC family protein
464	 56.29	0	529984..530436	+	150	158520481	-	Dole_0464	-	AsnC family transcriptional regulator
465	 62.64	+1	530470..531288	+	272	158520482	-	Dole_0465	-	Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase
466	 59.55	0	531264..532022	-	252	158520483	-	Dole_0466	-	tRNA pseudouridine synthase A
467	 63.22	+1	532231..533535	-	434	158520484	-	Dole_0467	-	FolC bifunctional protein
468	 48.31	-1	533608..533814	-	68	158520485	-	Dole_0468	-	ribosomal protein S21
469	 57.93	0	534043..534717	-	224	158520486	-	Dole_0469	-	adenylate kinase
470	 57.51	0	535141..536385	+	414	158520487	-	Dole_0470	-	transcription termination factor Rho
471	 55.86	0	536619..536840	+	73	158520488	-	Dole_0471	-	ribosomal protein L31
472	 59.85	0	536892..537962	+	356	158520489	-	Dole_0472	-	peptide chain release factor 1
473	 63.65	+1	537952..538845	+	297	158520490	-	Dole_0473	-	HemK family modification methylase
474	 58.03	0	539062..539976	+	304	158520491	-	Dole_0474	-	ribosomal protein S2
475	 57.62	0	540012..540608	+	198	158520492	-	Dole_0475	-	translation elongation factor Ts
476	 60.98	0	540612..541349	+	245	158520493	-	Dole_0476	-	uridylate kinase
477	 54.30	0	541391..541948	+	185	158520494	-	Dole_0477	-	ribosome recycling factor
478	 60.89	0	541938..542681	+	247	158520495	-	Dole_0478	-	undecaprenyl diphosphate synthase
479	 56.31	0	542702..543541	+	279	158520496	-	Dole_0479	-	phosphatidate cytidylyltransferase
480	 61.11	0	543538..544689	+	383	158520497	-	Dole_0480	-	1-deoxy-D-xylulose 5-phosphate reductoisomerase
481	 61.05	0	544794..545861	+	355	158520498	-	Dole_0481	-	putative membrane-associated zinc metalloprotease
482	 62.93	+1	545871..548867	+	998	158520499	-	Dole_0482	-	phosphoribosylformylglycinamidine synthase
483	 59.81	0	548864..549694	+	276	158520500	-	Dole_0483	-	phosphoribosylformylglycinamidine synthase
484	 61.26	0	549746..550966	+	406	158520501	-	Dole_0484	-	hypothetical protein
485	 54.70	0	551100..551726	-	208	158520502	-	Dole_0485	-	hypothetical protein
486	 57.34	0	552061..552564	+	167	158520503	-	Dole_0486	-	pilin assembly protein
487	 57.05	0	552575..553354	+	259	158520504	-	Dole_0487	-	Tfp pilus assembly protein PilW-like protein
488	 58.44	0	553377..553862	+	161	158520505	-	Dole_0488	-	hypothetical protein
489	 54.98	0	553859..554380	+	173	158520506	-	Dole_0489	-	hypothetical protein
490	 57.07	0	554441..559078	+	1545	158520507	-	Dole_0490	-	Pyrrolo-quinoline quinone
491	 52.98	0	559149..559484	+	111	158520508	-	Dole_0491	-	hypothetical protein
492	 58.63	0	559555..560400	-	281	158520509	-	Dole_0492	-	hydrolase
56.47	MEAN

5.93	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.