IslandPathversion 1.0

IslandPath Analysis: Burkholderia pseudomallei 1106a



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 67.97 STD DEV: 6.10
Burkholderia pseudomallei 1106a chromosome II, complete sequence - 1..3100794
3164 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
2133	 76.18	+1	2095685..2097943	-	752	126458419	-	BURPS1106A_A2143	-	hypothetical protein
2134	 76.15	+1	2097954..2102678	-	1574	126457527	-	BURPS1106A_A2144	-	putative cellulose synthase operon protein C
2135	 76.58	+1	2102657..2104219	-	520	126455862	-	BURPS1106A_A2145	-	endo-1,4-D-glucanase
2136	 72.47	0	2104224..2106671	-	815	126456989	-	BURPS1106A_A2146	-	cellulose synthase regulator protein
2137	 63.69	0	2106684..2106851	+	55	126457082	-	BURPS1106A_A2147	-	hypothetical protein
2138	 73.24	0	2106892..2107104	+	70	126458434	-	BURPS1106A_A2148	-	hypothetical protein
2139	 65.15	0	2107086..2107349	+	87	126456134	-	BURPS1106A_A2149	-	hypothetical protein
2140	 69.57	0	2107428..2107565	-	45	126457394	-	BURPS1106A_A2150	-	hypothetical protein
2141	 73.48	0	2107687..2108097	+	136	126457499	-	BURPS1106A_A2151	-	putative transcriptionl regulator HipB
2142	 72.14	0	2108094..2109446	+	450	126455544	-	BURPS1106A_A2152	-	putative regulatory protein HipA
2143	 69.98	0	2109603..2110055	-	150	126456423	-	BURPS1106A_A2153	-	hypothetical protein
2144	 65.99	0	2110156..2110302	-	48	126457989	-	BURPS1106A_A2154	-	hypothetical protein
2145	 70.60	0	2110479..2111393	-	304	126457088	-	BURPS1106A_A2155	-	LysR family transcriptional regulator
2146	 71.38	0	2111560..2112513	+	317	126455740	speB	BURPS1106A_A2157	-	agmatinase
2147	 73.47	0	2112468..2112908	-	146	126456627	-	BURPS1106A_A2156	-	hypothetical protein
2148	 68.52	0	2112907..2113122	+	71	126457261	-	BURPS1106A_A2158	-	hypothetical protein
2149	 68.24	0	2113119..2114519	+	466	126457555	-	BURPS1106A_A2159	-	hypothetical protein
2150	 75.33	+1	2114535..2114834	+	99	126456663	-	BURPS1106A_A2160	-	hypothetical protein
2151	 64.04	0	2115580..2115921	-	113	126456156	-	BURPS1106A_A2161	-	hypothetical protein
2152	 68.66	0	2116001..2116801	+	266	126457823	-	BURPS1106A_A2162	-	hypothetical protein
2153	 72.15	0	2116795..2117286	+	163	126456912	-	BURPS1106A_A2163	-	hypothetical protein
2154	 70.17	0	2117437..2118321	+	294	126455600	-	BURPS1106A_A2164	-	hypothetical protein
2155	 69.06	0	2118389..2120188	-	599	126457187	-	BURPS1106A_A2165	-	YscC/HrcC family type III secretion outer membrane protein
2156	 69.40	0	2120305..2121987	-	560	126458207	-	BURPS1106A_A2166	-	putative type IV pilus protein
2157	 76.46	+1	2121987..2122466	-	159	126455726	-	BURPS1106A_A2167	-	putative type IV pilus protein
2158	 64.47	0	2122506..2123096	-	196	126456000	-	BURPS1106A_A2168	-	putative type IV pilus protein
2159	 69.17	0	2123093..2124169	-	358	126457659	-	BURPS1106A_A2169	-	type IV pilus biogenesis protein
2160	 71.26	0	2124159..2125769	-	536	126458355	-	BURPS1106A_A2170	-	type IV pilus protein PilQ
2161	 76.85	+1	2125766..2126266	-	166	126456196	-	BURPS1106A_A2171	-	putative type IV pilus biogenesis protein PilP
2162	 71.98	0	2126280..2127578	-	432	126456277	-	BURPS1106A_A2172	-	putative type IV pilus biogenesis protein
2163	 71.63	0	2127590..2129362	-	590	126457943	-	BURPS1106A_A2173	-	type IVB pilus formation outer membrane protein
2164	 74.04	0	2129362..2129931	-	189	126457488	-	BURPS1106A_A2174	-	PilL domain-containing protein
2165	 48.25	-2	2130114..2130227	-	37	126457110	-	BURPS1106A_A2175	-	hypothetical protein
2166	 66.49	0	2130248..2131354	+	368	126456645	pilT	BURPS1106A_A2176	-	twitching motility protein PilT
2167	 78.95	+1	2131597..2133387	-	596	126457995	-	BURPS1106A_A2177	-	type II/III secretion system family protein
2168	 68.31	0	2133384..2134175	-	263	126457148	-	BURPS1106A_A2178	-	DNA-binding response regulator
2169	 73.06	0	2134184..2135263	-	359	126457002	-	BURPS1106A_A2179	-	putative sensor histidine kinase
2170	 64.10	0	2135397..2136020	-	207	126456103	-	BURPS1106A_A2180	-	hypothetical protein
2171	 80.95	+2	2136044..2136211	-	55	126457798	-	BURPS1106A_A2181	-	hypothetical protein
2172	 70.55	0	2136250..2136738	+	162	126456871	-	BURPS1106A_A2182	-	putative hrp protein
2173	 73.67	0	2136966..2137265	-	99	126456377	-	BURPS1106A_A2183	-	hypothetical protein
2174	 70.46	0	2137262..2138026	-	254	126457070	-	BURPS1106A_A2184	-	hypothetical protein
2175	 70.99	0	2138133..2138780	+	215	126458454	-	BURPS1106A_A2185	-	hypothetical protein
2176	 68.82	0	2138788..2138973	+	61	126455759	-	BURPS1106A_A2186	-	hypothetical protein
2177	 74.28	+1	2139007..2139282	-	91	126456872	-	BURPS1106A_A2187	-	hypothetical protein
2178	 72.96	0	2139336..2140781	-	481	126457775	-	BURPS1106A_A2188	-	regulatory protein HrpB
2179	 62.50	0	2140993..2141448	-	151	126455588	-	BURPS1106A_A2189	-	hypothetical protein
2180	 60.11	-1	2141541..2141723	-	60	126456459	-	BURPS1106A_A2190	-	hypothetical protein
2181	 73.81	0	2141893..2142144	-	83	126456999	-	BURPS1106A_A2191	-	hypothetical protein
2182	 74.80	+1	2142172..2143155	-	327	126457869	-	BURPS1106A_A2192	-	putative type III secretion apparatus protein
2183	 76.21	+1	2143351..2144220	-	289	126456104	-	BURPS1106A_A2193	-	hypothetical protein
2184	 66.29	0	2144217..2144480	-	87	126456673	-	BURPS1106A_A2194	-	HrpO family type III secretion protein
2185	 64.67	0	2144521..2145171	-	216	126457083	yscR	BURPS1106A_A2195	-	type III secretion system protein
2186	 76.35	+1	2145158..2146468	-	436	126458111	-	BURPS1106A_A2196	-	type III secretion system apparatus protein YscQ/HrcQ
2187	 75.98	+1	2146498..2147109	-	203	126456828	-	BURPS1106A_A2197	-	type III secretion protein HpaP
2188	 69.08	0	2147106..2149178	-	690	126456562	-	BURPS1106A_A2198	-	HrcV family type III secretion protein
2189	 70.63	0	2149175..2150437	-	420	126458610	-	BURPS1106A_A2199	-	type III secretion system protein HrcU
2190	 73.02	0	2150493..2151074	+	193	126455911	-	BURPS1106A_A2200	-	HrpB1/HrpK family type III secretion protein
2191	 67.87	0	2151088..2151504	+	138	126456357	-	BURPS1106A_A2201	-	type III secretion protein HrpB2
2192	 72.40	0	2151501..2152355	+	284	126457668	-	BURPS1106A_A2202	-	YscJ/HrcJ family type III secretion apparatus lipoprotein
2193	 77.29	+1	2152352..2153029	+	225	126458104	-	BURPS1106A_A2203	-	type III secretion protein HrpB4
2194	 74.55	+1	2153008..2153730	+	240	126458283	-	BURPS1106A_A2204	-	type III secretion system protein HrpB
2195	 71.86	0	2153727..2155055	+	442	126457565	-	BURPS1106A_A2205	-	type III secretion system ATPase
2196	 77.08	+1	2155052..2155579	+	175	126458279	-	BURPS1106A_A2206	-	type III secretion protein HrpB7
2197	 66.05	0	2155576..2156544	+	322	126455595	-	BURPS1106A_A2208	-	type III secretion protein SpaR/YscT/HrcT
2198	 71.43	0	2156528..2156905	-	125	126458229	-	BURPS1106A_A2207	-	hypothetical protein
2199	 71.08	0	2156912..2158678	+	588	126456257	-	BURPS1106A_A2209	-	hypothetical protein
2200	 76.59	+1	2158675..2158926	+	83	126458480	-	BURPS1106A_A2211	-	hypothetical protein
2201	 69.08	0	2158923..2159876	-	317	126457756	-	BURPS1106A_A2210	-	syringomycin biosynthesis enzyme
2202	 68.88	0	2159944..2178189	-	6081	126456041	-	BURPS1106A_A2212	-	non-ribosomal peptide synthase
2203	 66.20	0	2178186..2191592	-	4468	126458543	-	BURPS1106A_A2213	-	non-ribosomal peptide synthase
2204	 65.75	0	2191589..2201635	-	3348	126457283	-	BURPS1106A_A2214	-	syringomycin synthetase
2205	 67.17	0	2201724..2204507	-	927	126456760	-	BURPS1106A_A2215	-	diaminobutyrate--2-oxoglutarate aminotransferase
2206	 67.87	0	2204722..2204970	-	82	126456226	-	BURPS1106A_A2216	-	hypothetical protein
2207	 52.38	-2	2205575..2205784	-	69	126458561	-	BURPS1106A_A2217	-	hypothetical protein
2208	 68.73	0	2205935..2206225	-	96	126456424	-	BURPS1106A_A2218	-	hypothetical protein
2209	 68.41	0	2206247..2207965	-	572	126455548	-	BURPS1106A_A2219	-	pyruvate dehydrogenase
2210	 65.47	0	2207978..2209309	-	443	126458217	-	BURPS1106A_A2220	-	4-hydroxybutyrate coenzyme A transferase
2211	 61.55	-1	2209334..2209861	-	175	126455647	-	BURPS1106A_A2221	-	Acyl dehydratase
2212	 72.22	0	2209898..2210779	-	293	126458100	-	BURPS1106A_A2222	-	HpcH/HpaI aldolase/citrate lyase family protein
2213	 67.65	0	2210884..2211795	-	303	126457416	-	BURPS1106A_A2223	-	LysR family transcriptional regulator
2214	 73.86	0	2211794..2212057	+	87	126457685	-	BURPS1106A_A2224	-	hypothetical protein
2215	 72.32	0	2212085..2212261	+	58	126458599	-	BURPS1106A_A2225	-	hypothetical protein
2216	 68.51	0	2212357..2213277	-	306	126457669	-	BURPS1106A_A2226	-	LysR family transcriptional regulator
2217	 72.07	0	2213377..2214783	+	468	126456791	-	BURPS1106A_A2227	-	major facilitator family transporter
2218	 66.67	0	2214780..2215178	+	132	126455949	-	BURPS1106A_A2228	-	hypothetical protein
2219	 65.47	0	2215341..2216510	-	389	126457101	-	BURPS1106A_A2229	-	sensor histidine kinase
2220	 68.36	0	2216503..2217681	-	392	126456473	-	BURPS1106A_A2230	-	hypothetical protein
2221	 68.77	0	2217754..2219181	-	475	126456109	-	BURPS1106A_A2231	-	response regulator
2222	 54.62	-2	2219286..2219534	+	82	126457889	-	BURPS1106A_A2232	-	hypothetical protein
2223	 66.87	0	2219567..2221987	+	806	126456133	-	BURPS1106A_A2233	-	ricin-type beta-trefoil lectin domain/galactose oxidase domain-containing protein
2224	 72.15	0	2221984..2222475	+	163	126456249	-	BURPS1106A_A2234	-	hypothetical protein
2225	 72.20	0	2222462..2223076	+	204	126458281	-	BURPS1106A_A2235	-	hypothetical protein
2226	 65.87	0	2223175..2224173	-	332	126458564	-	BURPS1106A_A2236	-	patatin-like phospholipase
2227	 62.38	0	2224125..2224334	-	69	126457532	-	BURPS1106A_A2237	-	hypothetical protein
2228	 64.71	0	2224401..2224553	+	50	126456801	-	BURPS1106A_A2238	-	hypothetical protein
2229	 78.05	+1	2224697..2224819	-	40	126456536	-	BURPS1106A_A2239	-	hypothetical protein
2230	 72.55	0	2224794..2224946	-	50	126458094	-	BURPS1106A_A2240	-	putative transporter
2231	 72.10	0	2224946..2225350	-	134	126457444	-	BURPS1106A_A2241	-	4-hydroxybenzoate transporter
2232	 69.98	0	2225430..2227784	-	784	126456372	-	BURPS1106A_A2242	-	cytochrome P450 family protein
67.97	MEAN

6.10	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.