IslandPathversion 1.0

IslandPath Analysis: Burkholderia pseudomallei 1106a



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 67.62 STD DEV: 5.36
Burkholderia pseudomallei 1106a chromosome I, complete sequence - 1..3988455
4019 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
686	 72.51	0	663449..663790	+	113	126454052	-	BURPS1106A_0689	-	hypothetical protein
687	 65.43	0	663861..664508	+	215	126455087	-	BURPS1106A_0690	-	hypothetical protein
688	 66.33	0	664565..666367	+	600	126452649	aspS	BURPS1106A_0691	-	aspartyl-tRNA synthetase
689	 67.71	0	666577..667053	+	158	126453806	ntpA	BURPS1106A_0692	-	dATP pyrophosphohydrolase
690	 69.73	0	667050..668324	+	424	126454347	ybhO	BURPS1106A_0693	-	cardiolipin synthetase ybhO
691	 62.83	0	668514..669113	+	199	126453041	-	BURPS1106A_0694	-	TetR family transcriptional regulator
692	 64.54	0	669171..670958	+	595	126452094	-	BURPS1106A_0695	-	acyl-CoA dehydrogenase domain-containing protein
693	 67.41	0	671116..673551	+	811	126455250	-	BURPS1106A_0696	-	3-hydroxyacyl-CoA dehydrogenase/enoyl-CoA hydratase/isomerase family protein
694	 67.58	0	673731..674930	+	399	126454517	-	BURPS1106A_0697	-	acetyl-CoA acetyltransferase
695	 67.50	0	674947..675789	+	280	126453598	-	BURPS1106A_0698	-	enoyl-CoA hydratase
696	 70.91	0	675903..676727	-	274	126452579	fdhD	BURPS1106A_0699	-	formate dehydrogenase accessory protein FdhD
697	 64.49	0	676883..677341	+	152	126451820	-	BURPS1106A_0700	-	hypothetical protein
698	 66.42	0	677386..677784	-	132	126454934	-	BURPS1106A_0701	-	thioesterase family protein
699	 66.13	0	678106..679977	+	623	126454032	-	BURPS1106A_0702	-	heavy metal ABC transporter permease/ATP-binding protein
700	 73.02	+1	679989..680177	+	62	126453233	-	BURPS1106A_0703	-	hypothetical protein
701	 73.06	+1	680470..681189	-	239	126454695	-	BURPS1106A_0704	-	nucleotidyl transferase family protein
702	 69.66	0	681193..682227	-	344	126452318	-	BURPS1106A_0705	-	phosphotransferase family protein
703	 66.58	0	682440..684803	+	787	126452995	-	BURPS1106A_0706	-	organic solvent tolerance protein
704	 68.52	0	684870..686216	+	448	126454177	-	BURPS1106A_0707	-	putative survival protein SurA
705	 72.38	0	686238..687287	+	349	126451816	pdxA	BURPS1106A_0708	-	4-hydroxythreonine-4-phosphate dehydrogenase
706	 67.75	0	687319..688146	+	275	126452897	ksgA	BURPS1106A_0709	-	dimethyladenosine transferase
707	 71.46	0	688448..689386	-	312	126453632	-	BURPS1106A_0710	-	hypothetical protein
708	 61.79	-1	689764..690153	+	129	126452193	gloA	BURPS1106A_0712	-	lactoylglutathione lyase
709	 77.78	+1	690147..690281	-	44	126455236	-	BURPS1106A_0711	-	hypothetical protein
710	 69.06	0	690371..691249	-	292	126453427	-	BURPS1106A_0713	-	hypothetical protein
711	 67.69	0	691297..692076	-	259	126453701	-	BURPS1106A_0714	-	acyltransferase family protein
712	 67.55	0	692119..692682	-	187	126454414	-	BURPS1106A_0715	-	D,D-heptose 1,7-bisphosphate phosphatase
713	 69.90	0	692700..694799	-	699	126451572	glyS	BURPS1106A_0716	-	glycyl-tRNA synthetase subunit beta
714	 65.97	0	694816..695823	-	335	126451946	glyQ	BURPS1106A_0717	-	glycyl-tRNA synthetase subunit alpha
715	 70.65	0	696079..697785	-	568	126453100	lnt	BURPS1106A_0718	-	apolipoprotein N-acyltransferase
716	 64.08	0	697828..698715	-	295	126454637	corC	BURPS1106A_0719	-	magnesium and cobalt efflux protein CorC
717	 73.93	+1	699235..699867	-	210	126451861	-	BURPS1106A_0720	-	ChaC family protein
718	 67.65	0	699888..700703	-	271	126452368	-	BURPS1106A_0721	-	putative metalloprotease
719	 79.08	+2	700716..701021	+	101	126452599	-	BURPS1106A_0722	-	hypothetical protein
720	 69.58	0	701412..702476	-	354	126454094	-	BURPS1106A_0723	-	PhoH family protein
721	 65.28	0	702500..703873	-	457	126453332	miaB	BURPS1106A_0724	-	tRNA-i(6)A37 thiotransferase enzyme MiaB
722	 74.66	+1	703914..704351	-	145	126451897	-	BURPS1106A_0725	-	hypothetical protein
723	 69.13	0	704348..705280	-	310	126454951	-	BURPS1106A_0726	-	LysR family transcriptional regulator
724	 70.84	0	705426..706598	+	390	126453727	-	BURPS1106A_0727	-	major facilitator transporter
725	 70.10	0	706732..707400	+	222	126452578	-	BURPS1106A_0728	-	DNA-binding protein
726	 70.12	0	707824..708546	+	240	126454336	ribB	BURPS1106A_0729	-	3,4-dihydroxy-2-butanone 4-phosphate synthase
727	 68.56	0	708614..709300	-	228	126453162	-	BURPS1106A_0730	-	haloacid dehalogenase, IA family protein
728	 68.05	0	709430..710296	-	288	126451821	-	BURPS1106A_0731	-	hypothetical protein
729	 70.02	0	710373..711593	-	406	126454945	-	BURPS1106A_0732	-	hypothetical protein
730	 64.06	0	711637..713169	-	510	126453540	-	BURPS1106A_0733	-	putative asparagine synthase (glutamine-hydrolyzing)
731	 66.96	0	713213..714568	-	451	126453471	aroA	BURPS1106A_0734	-	3-phosphoshikimate 1-carboxyvinyltransferase
732	 69.88	0	714607..715914	-	435	126453347	aroA	BURPS1106A_0735	-	3-phosphoshikimate 1-carboxyvinyltransferase
733	 60.49	-1	715936..716550	-	204	126451993	-	BURPS1106A_0736	-	putative endoribonuclease L-PSP
734	 33.33	-2	716894..717040	+	48	126452225	-	BURPS1106A_0737	-	hypothetical protein
735	 67.09	0	717274..717990	-	238	126455034	glpF	BURPS1106A_0738	-	glycerol uptake facilitator protein
736	 67.24	0	718103..719659	-	518	126454003	glpK	BURPS1106A_0739	-	glycerol kinase
737	 70.19	0	719711..721243	-	510	126453105	glpD	BURPS1106A_0740	-	glycerol-3-phosphate dehydrogenase
738	 72.31	0	721411..721782	+	123	126454740	-	BURPS1106A_0741	-	putative lipoprotein
739	 60.61	-1	721849..722046	-	65	126453839	-	BURPS1106A_0742	-	hypothetical protein
740	 65.77	0	722365..723144	-	259	126452652	glpR	BURPS1106A_0743	-	glycerol-3-phosphate regulon repressor
741	 71.09	0	723372..725045	+	557	126452986	-	BURPS1106A_0744	-	putative gamma-glutamyltransferase
742	 44.44	-2	725072..725197	+	41	126454959	-	BURPS1106A_0745	-	hypothetical protein
743	 61.99	-1	725348..726181	+	277	126452358	-	BURPS1106A_0746	-	hypothetical protein
744	 74.05	+1	726251..726751	+	166	126453230	-	BURPS1106A_0747	-	hypothetical protein
745	 69.48	0	726887..728344	-	485	126454229	-	BURPS1106A_0748	-	putative ATP-dependent RNA helicase rhlE
746	 66.05	0	728472..729770	-	432	126454256	-	BURPS1106A_0749	-	cytochrome c family protein
747	 70.67	0	729790..730539	-	249	126455417	-	BURPS1106A_0750	-	putative cytochrome
748	 74.87	+1	730976..731902	+	308	126452805	-	BURPS1106A_0751	-	copper resistance family protein
749	 67.28	0	732434..733582	-	382	126453639	-	BURPS1106A_0752	-	mandelate racemase/muconate lactonizing enzyme
750	 61.78	-1	734039..734386	+	115	126453708	-	BURPS1106A_0753	-	hypothetical protein
751	 73.15	+1	734518..734964	-	148	126451549	-	BURPS1106A_0754	-	hypothetical protein
752	 70.77	0	735260..736942	+	560	126454112	-	BURPS1106A_0756	-	Ser/Thr protein phosphatase family protein
753	 69.85	0	736920..738803	-	627	126454746	-	BURPS1106A_0755	-	sensor histidine kinase
754	 67.63	0	738853..740298	-	481	126452409	-	BURPS1106A_0757	-	response regulator/HD domain-containing protein
755	 65.59	0	740321..740506	-	61	126455323	-	BURPS1106A_0758	-	hypothetical protein
756	 69.93	0	740960..741541	+	193	126452655	-	BURPS1106A_0759	-	hypothetical protein
757	 69.35	0	741709..743460	-	583	126451491	aer	BURPS1106A_0760	-	aerotaxis sensor receptor
758	 66.15	0	743541..744116	-	191	126451538	-	BURPS1106A_0761	-	hypothetical protein
759	 69.51	0	744352..746112	-	586	126454904	-	BURPS1106A_0762	-	FAD binding domain-containing protein
760	 70.35	0	746287..746883	-	198	126453805	-	BURPS1106A_0763	-	Na+/H+-dicarboxylate symporters
761	 74.06	+1	746914..747738	+	274	126453397	-	BURPS1106A_0764	-	LysR substrate binding domain-containing protein
762	 69.35	0	747788..748867	+	359	126453956	-	BURPS1106A_0765	-	tRNA 2-selenouridine synthase
763	 71.04	0	748892..749257	-	121	126455106	-	BURPS1106A_0766	-	hypothetical protein
764	 75.22	+1	749254..749592	-	112	126453941	-	BURPS1106A_0767	-	hypothetical protein
765	 67.92	0	749575..749814	+	79	126451644	-	BURPS1106A_0769	-	hypothetical protein
766	 71.91	0	749811..751127	-	438	126455097	-	BURPS1106A_0768	-	ABC transporter, ATP-binding protein
767	 71.57	0	751193..752926	-	577	126452920	-	BURPS1106A_0770	-	ABC transporter, permease protein
768	 67.20	0	752994..753182	-	62	126453458	-	BURPS1106A_0771	-	hypothetical protein
769	 74.80	+1	753179..753301	-	40	126454624	-	BURPS1106A_0772	-	hypothetical protein
770	 71.35	0	753300..754688	+	462	126455230	-	BURPS1106A_0773	-	protein-L-isoaspartate O-methyltransferase
771	 72.71	0	754643..755320	+	225	126455330	-	BURPS1106A_0774	-	hypothetical protein
772	 70.87	0	755317..756672	+	451	126451694	pncB	BURPS1106A_0775	-	nicotinate phosphoribosyltransferase
773	 79.82	+2	756699..756812	+	37	126452451	-	BURPS1106A_0776	-	hypothetical protein
774	 73.31	+1	756823..757530	+	235	126452059	-	BURPS1106A_0777	-	phosphoribosyl transferase domain-containing protein
775	 69.81	0	757578..760697	-	1039	126453896	-	BURPS1106A_0778	-	transglycosylase
776	 74.56	+1	760694..761263	-	189	126454426	-	BURPS1106A_0779	-	hypothetical protein
777	 76.52	+1	761194..762624	-	476	126455292	-	BURPS1106A_0780	-	cytochrome c family protein
778	 74.65	+1	762615..763265	-	216	126455036	-	BURPS1106A_0781	-	hypothetical protein
779	 69.50	0	763262..766186	-	974	126454136	-	BURPS1106A_0782	-	cytochrome c oxidase, subunit III:cytochrome c oxidase, subunit I
780	 74.26	+1	766203..767321	-	372	126452930	-	BURPS1106A_0783	-	cytochrome c oxidase, subunit II
781	 69.51	0	767359..769185	-	608	126453020	-	BURPS1106A_0784	-	pyruvate decarboxylase
782	 73.84	+1	769583..770683	+	366	126452147	-	BURPS1106A_0785	-	mandelate racemase/muconate lactonizing enzyme
783	 75.72	+1	770693..771664	+	323	126453872	-	BURPS1106A_0786	-	hypothetical protein
784	 72.60	0	771661..772503	+	280	126451683	-	BURPS1106A_0787	-	hypothetical protein
785	 71.10	0	772493..774184	+	563	126455286	-	BURPS1106A_0788	-	GMC oxidoreductase
67.62	MEAN

5.36	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.