IslandPathversion 1.0

IslandPath Analysis: Burkholderia pseudomallei 1106a



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 67.62 STD DEV: 5.36
Burkholderia pseudomallei 1106a chromosome I, complete sequence - 1..3988455
4019 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
328	 73.58	+1	303108..304409	+	433	126455001	-	BURPS1106A_0330	-	outer membrane efflux protein
329	 70.80	0	304420..305991	+	523	126452324	-	BURPS1106A_0331	-	RND family efflux transporter MFP subunit
330	 69.09	0	305988..309200	+	1070	126452286	-	BURPS1106A_0332	-	CzcA family heavy metal RND efflux protein
331	 68.71	0	309197..309538	+	113	126452203	-	BURPS1106A_0333	-	hypothetical protein
332	 77.59	+1	309542..309715	+	57	126454617	-	BURPS1106A_0334	-	hypothetical protein
333	 65.03	0	309829..310194	+	121	126453453	-	BURPS1106A_0335	-	putative streptavidin
334	 67.70	0	310269..312101	-	610	126452867	glmS	BURPS1106A_0336	-	D-fructose-6-phosphate amidotransferase
335	 56.06	-2	312064..312195	+	43	126452013	-	BURPS1106A_0338	-	hypothetical protein
336	 70.34	0	312165..313526	-	453	126451738	glmU	BURPS1106A_0337	-	UDP-N-acetylglucosamine pyrophosphorylase
337	 81.82	+2	313565..313861	-	98	126455010	-	BURPS1106A_0339	-	hypothetical protein
338	 65.76	0	314104..315099	-	331	126452389	-	BURPS1106A_0340	-	PP-loop family protein
339	 65.19	0	315096..315500	-	134	126453589	folB	BURPS1106A_0341	-	dihydroneopterin aldolase
340	 80.39	+2	315582..316463	-	293	126452432	-	BURPS1106A_0342	-	hypothetical protein
341	 71.45	0	316531..317721	+	396	126451987	-	BURPS1106A_0343	-	hypothetical protein
342	 65.64	0	317739..317933	+	64	126453080	-	BURPS1106A_0344	-	hypothetical protein
343	 77.36	+1	317930..318088	+	52	126453785	-	BURPS1106A_0345	-	hypothetical protein
344	 63.56	0	318222..318446	-	74	126454946	-	BURPS1106A_0346	-	hypothetical protein
345	 72.61	0	318758..319666	-	302	126451533	-	BURPS1106A_0347	-	putative fructokinase
346	 70.95	0	319663..321132	-	489	126451481	-	BURPS1106A_0348	-	N-acylglucosamine 2-epimerase family protein
347	 72.06	0	321129..322148	-	339	126454864	-	BURPS1106A_0349	-	LacI family transcription regulator
348	 73.65	+1	322319..323878	-	519	126454253	-	BURPS1106A_0350	-	methyl-accepting chemotaxis protein
349	 71.54	0	323941..324432	-	163	126452594	-	BURPS1106A_0351	-	hypothetical protein
350	 70.70	0	324489..325529	-	346	126452084	-	BURPS1106A_0352	-	sodium/bile acid symporter family protein
351	 77.36	+1	325912..326388	+	158	126451615	-	BURPS1106A_0354	-	hypothetical protein
352	 64.85	0	326349..326513	-	54	126455273	-	BURPS1106A_0353	-	hypothetical protein
353	 65.46	0	326796..327872	+	358	126452502	-	BURPS1106A_0355	-	outer membrane porin
354	 67.31	0	327906..328994	+	362	126453831	-	BURPS1106A_0356	-	LysR family transcriptional regulator
355	 67.50	0	329440..330399	-	319	126454748	-	BURPS1106A_0357	-	2-nitropropane dioxygenase family oxidoreductase
356	 64.85	0	330436..330600	+	54	126451505	-	BURPS1106A_0358	-	hypothetical protein
357	 69.57	0	330695..331588	+	297	126452596	-	BURPS1106A_0359	-	putative epoxide hydrolase
358	 68.10	0	331670..332158	-	162	126453876	-	BURPS1106A_0360	-	AsnC family transcriptional regulator
359	 67.15	0	332153..333184	+	343	126454784	-	BURPS1106A_0361	-	hypothetical protein
360	 48.72	-2	333359..333475	+	38	126452948	-	BURPS1106A_0362	-	hypothetical protein
361	 62.27	0	333572..334732	+	386	126454201	-	BURPS1106A_0363	-	ISBma1, transposase
362	 70.44	0	334783..334941	-	52	126455181	-	BURPS1106A_0364	-	hypothetical protein
363	 75.49	+1	334955..335158	+	67	126451508	-	BURPS1106A_0366	-	hypothetical protein
364	 71.20	0	335112..335618	-	168	126451961	-	BURPS1106A_0365	-	YbaK/prolyl-tRNA synthetase associated domain-containing protein
365	 70.30	0	335674..336609	-	311	126452627	-	BURPS1106A_0367	-	hydroxymethylglutaryl-CoA lyase
366	 73.25	+1	336695..337636	-	313	126451938	ghrA	BURPS1106A_0368	-	glyoxylate reductase
367	 67.12	0	337641..338078	-	145	126452726	-	BURPS1106A_0369	-	glyoxalase family protein
368	 72.54	0	338228..338857	+	209	126455166	-	BURPS1106A_0370	-	putative hydrolase
369	 71.05	0	338886..339296	-	136	126452008	nudF	BURPS1106A_0371	-	ADP-ribose pyrophosphatase
370	 68.08	0	339434..341551	-	705	126453428	plcN	BURPS1106A_0372	-	non-hemolytic phospholipase C (precursor)
371	 77.78	+1	341598..341894	-	98	126452314	-	BURPS1106A_0373	-	putative lipoprotein
372	 65.14	0	342132..342590	-	152	126452326	-	BURPS1106A_0374	-	leucine-responsive regulatory protein
373	 69.82	0	342715..343443	+	242	126453316	-	BURPS1106A_0375	-	AzlC family protein
374	 65.02	0	343440..343742	+	100	126453849	-	BURPS1106A_0376	-	AzlD family protein
375	 70.62	0	343739..344572	+	277	126454653	-	BURPS1106A_0377	-	alpha/beta fold family hydrolase
376	 61.45	-1	344936..345529	-	197	126453244	-	BURPS1106A_0378	-	SCO1/SenC family protein
377	 62.97	0	345557..348400	-	947	126452313	-	BURPS1106A_0379	-	kelch domain-containing protein
378	 62.56	0	348774..348992	+	72	126454565	-	BURPS1106A_0380	-	hypothetical protein
379	 67.07	0	349049..349294	+	81	126453472	-	BURPS1106A_0381	-	hypothetical protein
380	 69.79	0	349355..350251	-	298	126451728	dapA	BURPS1106A_0382	-	dihydrodipicolinate synthase
381	 61.75	-1	350382..350564	-	60	126453666	-	BURPS1106A_0383	-	sensor histidine kinase
382	 70.83	0	350591..350710	+	39	126451646	-	BURPS1106A_0384	-	hypothetical protein
383	 58.55	-1	351426..351992	-	188	126452291	-	BURPS1106A_0385	-	hypothetical protein
384	 57.53	-1	352345..352902	+	185	126454984	-	BURPS1106A_0386	-	hypothetical protein
385	 63.70	0	353142..353276	-	44	126454199	-	BURPS1106A_0387	-	hypothetical protein
386	 66.67	0	353370..353711	+	113	126452776	-	BURPS1106A_0388	-	Fis family regulatory protein
387	 71.43	0	353851..354081	+	76	126451926	-	BURPS1106A_0389	-	transcriptional regulator, Fis family protein
388	 77.96	+1	354078..354263	+	61	126454465	-	BURPS1106A_0390	-	hypothetical protein
389	 65.38	0	354498..355511	+	337	126453603	-	BURPS1106A_0392	-	sulfate/thiosulfate ABC transporter, periplasmic sulfate-binding protein
390	 75.89	+1	355492..355632	-	46	126453620	-	BURPS1106A_0391	-	hypothetical protein
391	 68.26	0	356014..357705	+	563	126451557	-	BURPS1106A_0393	-	serine carboxypeptidase family protein
392	 70.37	0	357777..358181	+	134	126452607	-	BURPS1106A_0394	-	hypothetical protein
393	 67.76	0	358295..359296	+	333	126453918	-	BURPS1106A_0395	-	inward rectifier potassium channel
394	 50.83	-2	359380..359499	-	39	126452056	-	BURPS1106A_0396	-	hypothetical protein
395	 69.69	0	359513..363088	+	1191	126454069	-	BURPS1106A_0398	-	2-oxoacid ferredoxin oxidoreductase
396	 71.43	0	363053..363283	-	76	126453161	-	BURPS1106A_0397	-	Atu, putative
397	 69.96	0	363348..365015	-	555	126455176	-	BURPS1106A_0399	-	Na+/H+ antiporter
398	 68.89	0	365222..366616	+	464	126452749	-	BURPS1106A_0400	-	cyclic diguanylate phosphodiesterase
399	 68.06	0	366931..367074	+	47	126453774	-	BURPS1106A_0401	-	hypothetical protein
400	 64.30	0	367071..367451	+	126	126451852	-	BURPS1106A_0403	-	hypothetical protein
401	 77.08	+1	367432..367575	-	47	126454668	-	BURPS1106A_0402	-	hypothetical protein
402	 69.25	0	367756..369186	+	476	126454088	-	BURPS1106A_0404	-	alkaline phosphatase family protein
403	 68.66	0	369219..370622	+	467	126453494	-	BURPS1106A_0405	-	alkaline phosphatase family protein
404	 73.31	+1	370628..371485	+	285	126452050	-	BURPS1106A_0406	-	hypothetical protein
405	 69.41	0	371585..371803	+	72	126453137	-	BURPS1106A_0407	-	hypothetical protein
406	 73.11	+1	371864..372577	+	237	126454354	-	BURPS1106A_0408	-	cutC family protein
407	 67.06	0	372704..373714	-	336	126455331	bioB	BURPS1106A_0409	-	biotin synthase
408	 74.14	+1	373787..374509	-	240	126452118	bioD	BURPS1106A_0410	-	dithiobiotin synthetase
409	 73.42	+1	374506..375690	-	394	126453003	bioF	BURPS1106A_0411	-	8-amino-7-oxononanoate synthase
410	 69.78	0	375687..377033	-	448	126453838	bioA	BURPS1106A_0412	-	adenosylmethionine--8-amino-7-oxononanoate transaminase
411	 60.14	-1	377022..377159	+	45	126452635	-	BURPS1106A_0413	-	hypothetical protein
412	 70.96	0	377597..378925	-	442	126451752	-	BURPS1106A_0414	-	hypothetical protein
413	 73.29	+1	379109..379561	-	150	126454895	-	BURPS1106A_0415	-	hypothetical protein
414	 73.16	+1	379593..380270	-	225	126453017	-	BURPS1106A_0416	-	short chain dehydrogenase
415	 71.36	0	380301..381494	-	397	126453855	-	BURPS1106A_0417	-	acetyl-CoA acetyltransferase
416	 66.28	0	381481..382251	-	256	126451967	-	BURPS1106A_0418	-	putative carbonic anhydrase
417	 63.95	0	382309..384150	-	613	126455146	aceK	BURPS1106A_0419	-	bifunctional isocitrate dehydrogenase kinase/phosphatase protein
418	 70.28	0	384410..385489	+	359	126454087	-	BURPS1106A_0420	-	metallo-beta-lactamase family protein
419	 75.35	+1	385776..387422	-	548	126452621	-	BURPS1106A_0421	-	ABC transporter, ATP-binding protein
420	 65.66	0	387656..389242	-	528	126452388	-	BURPS1106A_0422	-	ABC transporter, periplasmic substrate-binding protein
421	 75.29	+1	389340..390023	-	227	126454277	-	BURPS1106A_0423	-	hypothetical protein
422	 67.31	0	390219..390686	-	155	126455388	-	BURPS1106A_0424	-	MarR family transcriptional regulator
423	 63.86	0	390690..390938	+	82	126454650	-	BURPS1106A_0425	-	hypothetical protein
424	 70.59	0	390925..391638	+	237	126451605	-	BURPS1106A_0426	-	short chain dehydrogenase
425	 70.64	0	391783..392562	-	259	126452913	-	BURPS1106A_0427	-	short chain dehydrogenase
426	 62.60	0	392579..393217	-	212	126454008	-	BURPS1106A_0428	-	Thiol:disulfide interchange protein dsbA precursor
427	 70.96	0	393269..394129	-	286	126453314	-	BURPS1106A_0429	-	cell division protein
67.62	MEAN

5.36	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.