IslandPathversion 1.0

IslandPath Analysis: Burkholderia pseudomallei 1106a



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 67.62 STD DEV: 5.36
Burkholderia pseudomallei 1106a chromosome I, complete sequence - 1..3988455
4019 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
2203	 65.04	0	2213305..2213427	+	40	126454937	-	BURPS1106A_2224	-	hypothetical protein
2204	 69.02	0	2213563..2214708	-	381	126452965	-	BURPS1106A_2225	-	PQQ repeat-containing protein
2205	 67.46	0	2214753..2215382	-	209	126454178	-	BURPS1106A_2226	-	hypothetical protein
2206	 65.62	0	2215435..2216775	-	446	126453409	hisS	BURPS1106A_2227	-	histidyl-tRNA synthetase
2207	 69.46	0	2216794..2218044	-	416	126452211	ispG	BURPS1106A_2228	-	4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase
2208	 74.78	+1	2218188..2219198	-	336	126454923	-	BURPS1106A_2229	-	hypothetical protein
2209	 65.35	0	2219418..2220554	-	378	126453816	-	BURPS1106A_2230	-	radical SAM protein
2210	 62.68	0	2220596..2221021	-	141	126452672	ndk	BURPS1106A_2231	-	nucleoside diphosphate kinase
2211	 63.95	0	2221270..2221968	+	232	126452257	-	BURPS1106A_2232	-	hypothetical protein
2212	 67.31	0	2222042..2223439	-	465	126455291	rumA	BURPS1106A_2233	-	23S rRNA 5-methyluridine methyltransferase
2213	 72.01	0	2223517..2224377	+	286	126454152	-	BURPS1106A_2234	-	endonuclease/exonuclease/phosphatase family protein
2214	 64.74	0	2224566..2225342	-	258	126453166	-	BURPS1106A_2235	-	hypothetical protein
2215	 64.54	0	2225350..2226429	-	359	126452489	rpoS	BURPS1106A_2236	-	RNA polymerase sigma factor RpoS
2216	 68.01	0	2226441..2227331	-	296	126454413	-	BURPS1106A_2237	-	M23 family peptidase
2217	 73.27	+1	2227343..2228311	-	322	126454697	pcm	BURPS1106A_2238	-	protein-L-isoaspartate O-methyltransferase
2218	 66.93	0	2228308..2229069	-	253	126451735	surE	BURPS1106A_2239	-	stationary phase survival protein SurE
2219	 77.52	+1	2229094..2229222	+	42	126455452	-	BURPS1106A_2241	-	hypothetical protein
2220	 69.65	0	2229174..2230379	-	401	126452831	-	BURPS1106A_2240	-	CAIB/BAIF family protein
2221	 69.32	0	2230449..2231051	-	200	126452036	recR	BURPS1106A_2242	-	recombination protein RecR
2222	 64.83	0	2231083..2231409	-	108	126452757	-	BURPS1106A_2243	-	hypothetical protein
2223	 72.84	0	2231506..2233983	-	825	126454158	dnaX	BURPS1106A_2244	-	DNA polymerase III subunits gamma and tau
2224	 59.03	-1	2233980..2234123	-	47	126454840	-	BURPS1106A_2245	-	hypothetical protein
2225	 61.77	-1	2234647..2234973	+	108	126454139	trx	BURPS1106A_2246	-	thioredoxin
2226	 56.35	-2	2234980..2235105	+	41	126454987	-	BURPS1106A_2247	-	hypothetical protein
2227	 61.92	-1	2235169..2236431	+	420	126452370	rho	BURPS1106A_2248	-	transcription termination factor Rho
2228	 71.06	0	2236568..2237068	+	166	126455381	-	BURPS1106A_2249	-	MerR family transcriptional regulator
2229	 67.82	0	2237065..2238621	+	518	126452028	-	BURPS1106A_2250	-	major facilitator transporter
2230	 67.38	0	2238664..2239509	+	281	126451624	-	BURPS1106A_2251	-	hypothetical protein
2231	 56.44	-2	2239724..2239987	+	87	126453844	rpmE2	BURPS1106A_2253	-	50S ribosomal protein L31 type B
2232	 70.37	0	2239941..2240183	-	80	126454223	-	BURPS1106A_2252	-	hypothetical protein
2233	 69.58	0	2240211..2241959	+	582	126454480	-	BURPS1106A_2254	-	hypothetical protein
2234	 69.91	0	2241963..2243318	+	451	126452070	-	BURPS1106A_2255	-	MATE efflux family protein
2235	 71.53	0	2243433..2243576	-	47	126451453	-	BURPS1106A_2256	-	hypothetical protein
2236	 65.41	0	2243709..2244107	-	132	126452606	-	BURPS1106A_2257	-	4-carboxymuconolactone decarboxylase family protein
2237	 66.67	0	2244056..2244550	-	164	126453718	-	BURPS1106A_2258	-	MerR family transcriptional regulator
2238	 71.92	0	2244906..2245514	+	202	126452843	-	BURPS1106A_2259	-	putative comE protein
2239	 66.67	0	2245593..2246015	+	140	126453121	-	BURPS1106A_2260	-	hypothetical protein
2240	 65.97	0	2246264..2248861	-	865	126453997	clpB	BURPS1106A_2261	-	clpB protein
2241	 80.70	+2	2248955..2249068	-	37	126455394	-	BURPS1106A_2262	-	hypothetical protein
2242	 65.66	0	2249065..2249562	-	165	126452205	-	BURPS1106A_2263	-	putative transcriptional regulator
2243	 68.14	0	2249746..2250288	+	180	126452585	-	BURPS1106A_2264	-	hypothetical protein
2244	 67.89	0	2250616..2251104	-	162	126453451	moaE	BURPS1106A_2265	-	molybdopterin converting factor, subunit 2
2245	 71.32	0	2251115..2251372	-	85	126452723	moaD	BURPS1106A_2266	-	molybdopterin converting factor, subunit 1
2246	 71.52	0	2251394..2252692	-	432	126453310	moeA	BURPS1106A_2267	-	molybdenum cofactor biosynthesis protein MoeA
2247	 66.99	0	2252662..2252970	-	102	126454605	-	BURPS1106A_2268	-	hypothetical protein
2248	 67.01	0	2253484..2254935	-	483	126454084	thrC	BURPS1106A_2269	-	threonine synthase
2249	 68.10	0	2254943..2256271	-	442	126454983	hom	BURPS1106A_2270	-	homoserine dehydrogenase
2250	 64.81	0	2256316..2257554	-	412	126451904	ortho	BURPS1106A_2271	-	aminotransferase AlaT
2251	 68.97	0	2257746..2258267	+	173	126453112	-	BURPS1106A_2272	-	hypothetical protein
2252	 68.83	0	2258436..2260142	+	568	126454536	-	BURPS1106A_2273	-	dolichyl-phosphate-mannose-protein mannosyltransferase family protein
2253	 63.71	0	2260163..2260534	+	123	126451934	-	BURPS1106A_2274	-	hypothetical protein
2254	 67.36	0	2260661..2261812	+	383	126452183	-	BURPS1106A_2275	-	aminotransferase
2255	 66.47	0	2261819..2262826	+	335	126454149	arnC	BURPS1106A_2276	-	undecaprenyl-phosphate 4-deoxy-4-formamido-L-arabinose transferase
2256	 71.20	0	2262823..2263770	+	315	126452558	-	BURPS1106A_2277	-	hypothetical protein
2257	 62.28	0	2263797..2264822	+	341	126452402	-	BURPS1106A_2278	-	hypothetical protein
2258	 69.12	0	2264837..2265733	+	298	126453270	-	BURPS1106A_2279	-	polysaccharide deacetylase family protein
2259	 61.26	-1	2265823..2266284	+	153	126452401	-	BURPS1106A_2280	-	anti-oxidant AhpCTSA family protein
2260	 64.07	0	2266478..2266708	-	76	126455051	-	BURPS1106A_2281	-	hypothetical protein
2261	 67.89	0	2266775..2268409	+	544	126454067	-	BURPS1106A_2282	-	PhoH family protein
2262	 74.24	+1	2268649..2269863	+	404	126454270	-	BURPS1106A_2283	-	NlpC/P60 family lipoprotein
2263	 65.58	0	2270099..2271109	-	336	126452760	-	BURPS1106A_2284	-	phosphate transporter family protein
2264	 60.93	-1	2271120..2271746	-	208	126452337	-	BURPS1106A_2285	-	hypothetical protein
2265	 65.51	0	2271885..2273267	-	460	126452188	dnaB	BURPS1106A_2286	-	replicative DNA helicase
2266	 65.12	0	2273277..2273405	-	42	126453687	-	BURPS1106A_2287	-	hypothetical protein
2267	 63.36	0	2273411..2273863	-	150	126452488	rplI	BURPS1106A_2288	-	50S ribosomal protein L9
2268	 60.14	-1	2273891..2274166	-	91	126454887	rpsR	BURPS1106A_2289	-	30S ribosomal protein S18
2269	 64.00	0	2274169..2274468	-	99	126454159	priB	BURPS1106A_2290	-	primosomal replication protein n
2270	 59.47	-1	2274505..2274879	-	124	126453081	rpsF	BURPS1106A_2291	-	30S ribosomal protein S6
2271	 73.68	+1	2275114..2276253	-	379	126452423	-	BURPS1106A_2292	-	hypothetical protein
2272	 72.32	0	2276243..2276950	-	235	126452308	-	BURPS1106A_2293	-	RNA polymerase sigma factor
2273	 66.67	0	2276965..2277093	+	42	126453681	-	BURPS1106A_2294	-	hypothetical protein
2274	 70.36	0	2277156..2278076	+	306	126452835	-	BURPS1106A_2295	-	Ser/Thr protein phosphatase family protein
2275	 72.54	0	2278087..2278512	+	141	126451612	-	BURPS1106A_2296	-	putative cytochrome c oxidase subunit
2276	 63.77	0	2278540..2278815	-	91	126454831	-	BURPS1106A_2297	-	hypothetical protein
2277	 68.64	0	2278812..2279723	-	303	126453911	-	BURPS1106A_2298	-	LysR family transcriptional regulator
2278	 68.24	0	2279886..2281661	+	591	126452983	gcl	BURPS1106A_2299	-	glyoxylate carboligase
2279	 68.31	0	2281778..2282566	+	262	126452139	-	BURPS1106A_2300	-	hydroxypyruvate isomerase
2280	 69.76	0	2282664..2283569	+	301	126455103	-	BURPS1106A_2301	-	2-hydroxy-3-oxopropionate reductase
2281	 66.81	0	2283651..2284328	+	225	126454543	-	BURPS1106A_2302	-	hypothetical protein
2282	 64.76	0	2284341..2284811	+	156	126452890	-	BURPS1106A_2304	-	hypothetical protein
2283	 70.32	0	2284772..2284990	-	72	126453403	-	BURPS1106A_2303	-	hypothetical protein
2284	 72.03	0	2284987..2286030	-	347	126451697	-	BURPS1106A_2305	-	L-asparaginase, type II
2285	 68.38	0	2286007..2286531	+	174	126452381	-	BURPS1106A_2306	-	hypothetical protein
2286	 64.95	0	2286528..2286818	+	96	126451535	psiF	BURPS1106A_2307	-	phosphate starvation-inducible protein PsiF
2287	 70.62	0	2287025..2287504	+	159	126453236	-	BURPS1106A_2309	-	hypothetical protein
2288	 67.36	0	2287498..2287641	-	47	126454130	-	BURPS1106A_2308	-	hypothetical protein
2289	 67.86	0	2287742..2288329	+	195	126451712	-	BURPS1106A_2310	-	putative lipoprotein
2290	 74.32	+1	2288341..2288562	+	73	126454208	-	BURPS1106A_2312	-	hypothetical protein
2291	 66.01	0	2288537..2289601	-	354	126455093	-	BURPS1106A_2311	-	glycosyl transferase, group 1 family protein
2292	 71.50	0	2289977..2291155	-	392	126452783	-	BURPS1106A_2313	-	hypothetical protein
2293	 70.20	0	2291435..2292622	-	395	126455055	-	BURPS1106A_2314	-	mechanosensitive ion channel family protein
2294	 68.08	0	2292689..2293042	-	117	126454163	-	BURPS1106A_2315	-	hypothetical protein
2295	 66.94	0	2293116..2293844	-	242	126453929	-	BURPS1106A_2316	-	ankyrin repeat-containing protein
2296	 67.28	0	2293855..2294664	-	269	126452010	-	BURPS1106A_2317	-	TatD family hydrolase
2297	 71.40	0	2294740..2295246	-	168	126451664	-	BURPS1106A_2318	-	acetyltransferase
2298	 73.53	+1	2295289..2296323	-	344	126452739	holB	BURPS1106A_2319	-	DNA polymerase III subunit delta'
2299	 70.05	0	2296343..2296963	-	206	126454444	tdk	BURPS1106A_2320	-	thymidylate kinase
2300	 69.12	0	2296964..2297983	-	339	126452309	-	BURPS1106A_2321	-	putative lipoprotein
2301	 72.78	0	2298062..2299108	+	348	126452702	-	BURPS1106A_2322	-	glycine cleavage T-protein (aminomethyl transferase) family protein
2302	 73.12	+1	2299179..2300030	+	283	126453769	-	BURPS1106A_2323	-	hypothetical protein
67.62	MEAN

5.36	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.