IslandPathversion 1.0

IslandPath Analysis: Burkholderia pseudomallei 1106a



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 67.62 STD DEV: 5.36
Burkholderia pseudomallei 1106a chromosome I, complete sequence - 1..3988455
4019 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1822	 65.49	0	1799046..1799300	+	84	126455039	-	BURPS1106A_1841	-	hypothetical protein
1823	 65.69	0	1800276..1801295	-	339	126452196	dusA	BURPS1106A_1843	-	tRNA-dihydrouridine synthase A
1824	 73.46	+1	1801378..1801833	+	151	126452774	-	BURPS1106A_1844	-	hypothetical protein
1825	 65.44	0	1801873..1803180	-	435	126453978	-	BURPS1106A_1845	-	dicarboxylate/amino acid:cation (Na+ or H+) symporter (DAACS) family protein
1826	 71.96	0	1803405..1803971	+	188	126453027	-	BURPS1106A_1846	-	hypothetical protein
1827	 66.88	0	1804361..1804837	-	158	126454393	-	BURPS1106A_1847	-	putative transcriptional regulator
1828	 66.44	0	1805019..1805456	+	145	126455018	-	BURPS1106A_1848	-	thioesterase family protein
1829	 66.76	0	1805743..1806795	+	350	126452140	-	BURPS1106A_1849	-	aldo/keto reductase family oxidoreductase
1830	 71.47	0	1807151..1808212	+	353	126453257	-	BURPS1106A_1850	-	putative permease
1831	 66.67	0	1808377..1808526	+	49	126454325	-	BURPS1106A_1851	-	hypothetical protein
1832	 67.14	0	1808523..1808945	+	140	126454944	-	BURPS1106A_1852	-	hypothetical protein
1833	 78.03	+1	1808942..1809073	+	43	126454077	-	BURPS1106A_1854	-	hypothetical protein
1834	 65.95	0	1809051..1809887	-	278	126451561	-	BURPS1106A_1853	-	nodulation ABC transporter NodJ
1835	 66.01	0	1809892..1810806	-	304	126453723	nodI	BURPS1106A_1855	-	lipooligosaccharide transporter ATP-binding subunit
1836	 63.62	0	1811036..1811527	+	163	126452151	-	BURPS1106A_1856	-	universal stress family protein
1837	 68.57	0	1811938..1812672	-	244	126452784	-	BURPS1106A_1857	-	hypothetical protein
1838	 67.58	0	1812706..1813032	-	108	126454117	-	BURPS1106A_1858	-	hypothetical protein
1839	 68.83	0	1813095..1813742	-	215	126454981	lexA	BURPS1106A_1859	-	LexA repressor
1840	 49.43	-2	1813746..1813919	+	57	126452296	-	BURPS1106A_1860	-	hypothetical protein
1841	 66.96	0	1814045..1815082	+	345	126451687	-	BURPS1106A_1861	-	sulfate/thiosulfate ABC transporter, periplasmic sulfate-binding protein
1842	 69.24	0	1815215..1816108	+	297	126452543	cysT	BURPS1106A_1862	-	sulfate/thiosulfate ABC transporter, permease protein CysT
1843	 70.24	0	1816105..1817139	+	344	126453834	cysW	BURPS1106A_1863	-	sulfate/thiosulfate ABC transporter, permease protein CysW
1844	 72.44	0	1817153..1818208	+	351	126454799	cysA	BURPS1106A_1864	-	sulfate/thiosulfate ABC transporter, ATP-binding protein
1845	 65.70	0	1818278..1819204	+	308	126452001	-	BURPS1106A_1865	-	transcriptional regulator CysB-like protein
1846	 65.52	0	1819395..1820525	+	376	126453843	-	BURPS1106A_1866	-	putative ribose ABC transporter, periplasmic ribose-binding protein
1847	 67.52	0	1820583..1820699	-	38	126452724	-	BURPS1106A_1867	-	hypothetical protein
1848	 73.79	+1	1820665..1822236	+	523	126455157	-	BURPS1106A_1868	-	putative ribose ABC transporter, ATP-binding protein
1849	 69.92	0	1822307..1823320	+	337	126454007	-	BURPS1106A_1869	-	putative ribose ABC transporter, permease protein
1850	 70.16	0	1823350..1824381	+	343	126454096	rbsR	BURPS1106A_1870	-	ribose operon repressor RbsR
1851	 77.64	+1	1824378..1825352	+	324	126453421	rbsK	BURPS1106A_1871	-	ribokinase
1852	 71.35	0	1825565..1827445	+	626	126451531	-	BURPS1106A_1872	-	methyl-accepting chemotaxis protein
1853	 61.05	-1	1828296..1830218	+	640	126454647	prkA	BURPS1106A_1873	-	serine protein kinase
1854	 63.51	0	1830342..1831607	+	421	126452511	-	BURPS1106A_1874	-	hypothetical protein
1855	 63.46	0	1831607..1833289	+	560	126451642	-	BURPS1106A_1875	-	hypothetical protein
1856	 75.26	+1	1833256..1833546	+	96	126451842	-	BURPS1106A_1876	-	hypothetical protein
1857	 66.97	0	1833716..1835020	+	434	126451917	-	BURPS1106A_1877	-	alpha-ketoglutarate permease
1858	 69.53	0	1835273..1836319	+	348	126452998	-	BURPS1106A_1878	-	ABC transporter substrate binding protein
1859	 66.03	0	1836371..1836685	+	104	126452114	-	BURPS1106A_1879	-	hypothetical protein
1860	 71.12	0	1836780..1837610	+	276	126455247	-	BURPS1106A_1880	-	ABC transporter, ATP-binding protein
1861	 72.74	0	1837607..1838578	+	323	126454363	-	BURPS1106A_1881	-	ABC transporter, permease protein
1862	 61.98	-1	1839135..1839326	+	63	126454658	-	BURPS1106A_1882	-	Flp/Fap pilin
1863	 76.88	+1	1839352..1839870	+	172	126455283	-	BURPS1106A_1883	-	peptidase A24A, prepilin type IV
1864	 76.92	+1	1839883..1840935	+	350	126452162	-	BURPS1106A_1884	-	putative pilus assembly protein CpaB
1865	 70.95	0	1840970..1842418	+	482	126453026	-	BURPS1106A_1885	-	type II/III secretion system protein
1866	 77.05	+1	1842452..1842865	+	137	126452011	-	BURPS1106A_1886	-	putative lipoprotein
1867	 74.35	+1	1842876..1844111	+	411	126453450	-	BURPS1106A_1887	-	putative CpaE protein
1868	 71.18	0	1844111..1845682	+	523	126452852	-	BURPS1106A_1888	-	type IV pilus assembly protein
1869	 73.29	+1	1845679..1846674	+	331	126452248	-	BURPS1106A_1889	-	type II secretion system protein
1870	 72.38	0	1846671..1847615	+	314	126454623	-	BURPS1106A_1890	-	type II secretion system protein
1871	 75.15	+1	1847759..1848760	+	333	126454065	-	BURPS1106A_1891	-	TPR repeat-containing protein
1872	 67.83	0	1848757..1849185	+	142	126452631	-	BURPS1106A_1892	-	TadE family protein
1873	 73.35	+1	1849178..1850209	+	343	126453566	-	BURPS1106A_1894	-	TadE family protein
1874	 76.39	+1	1850173..1850316	-	47	126454855	-	BURPS1106A_1893	-	hypothetical protein
1875	 65.20	0	1850489..1851304	+	271	126454167	-	BURPS1106A_1895	-	putative amino acid ABC transporter, periplasmic amino acid-binding protein
1876	 75.00	+1	1851349..1851468	+	39	126455214	-	BURPS1106A_1896	-	hypothetical protein
1877	 71.73	0	1851465..1851701	+	78	126453791	-	BURPS1106A_1897	-	hypothetical protein
1878	 71.07	0	1851703..1852428	+	241	126452880	-	BURPS1106A_1898	-	His/Glu/Gln/Arg/opine amino acid ABC transporter permease
1879	 71.10	0	1852431..1853174	+	247	126451643	-	BURPS1106A_1899	-	His/Glu/Gln/Arg/opine amino acid ABC transporter permease
1880	 74.36	+1	1853216..1854631	-	471	126451678	-	BURPS1106A_1900	-	M24/M37 family peptidase
1881	 56.30	-2	1854773..1854907	+	44	126454315	-	BURPS1106A_1901	-	hypothetical protein
1882	 70.39	0	1854973..1855644	-	223	126453336	amrR	BURPS1106A_1902	-	multidrug efflux operon transciptional regulator AmrR
1883	 73.83	+1	1855788..1856987	+	399	126451999	amrA	BURPS1106A_1903	-	periplasmic multidrug efflux lipoprotein precursor
1884	 68.87	0	1857004..1860135	+	1043	126454286	amrB	BURPS1106A_1904	-	multidrug efflux protein
1885	 74.40	+1	1860132..1861682	+	516	126455205	oprA	BURPS1106A_1905	-	outer membrane efflux protein OprA
1886	 74.21	+1	1862046..1862204	-	52	126452400	-	BURPS1106A_1906	-	hypothetical protein
1887	 52.63	-2	1862847..1863188	+	113	126455062	-	BURPS1106A_1907	-	hypothetical protein
1888	 45.19	-2	1863385..1863519	+	44	126453759	-	BURPS1106A_1908	-	hypothetical protein
1889	 67.25	0	1863636..1864148	+	170	126453258	-	BURPS1106A_1909	-	fimbrial protein
1890	 69.90	0	1864298..1866739	+	813	126452598	-	BURPS1106A_1910	-	fimbrial usher protein
1891	 70.53	0	1866918..1867667	+	249	126451496	yfcS	BURPS1106A_1911	-	fimbrial chaperone yfcS precursor
1892	 66.95	0	1867631..1868689	+	352	126452062	-	BURPS1106A_1912	-	hypothetical protein
1893	 71.21	0	1868740..1870500	-	586	126455442	-	BURPS1106A_1913	-	ABC transporter, ATP-binding protein
1894	 74.42	+1	1870497..1870625	-	42	126453125	-	BURPS1106A_1914	-	hypothetical protein
1895	 70.79	0	1870634..1872235	-	533	126452006	-	BURPS1106A_1915	-	asparagine synthase
1896	 66.53	0	1872312..1873022	-	236	126451596	-	BURPS1106A_1916	-	hypothetical protein
1897	 59.03	-1	1873075..1873218	-	47	126454805	-	BURPS1106A_1917	-	hypothetical protein
1898	 67.96	0	1873458..1873766	-	102	126454345	-	BURPS1106A_1918	-	hypothetical protein
1899	 68.18	0	1873815..1874804	+	329	126452445	-	BURPS1106A_1919	-	AraC family transcriptional regulator
1900	 68.35	0	1874906..1875853	+	315	126453551	-	BURPS1106A_1920	-	carbohydrate ABC transporter periplasmic sugar-binding protein
1901	 70.15	0	1875847..1877454	+	535	126453379	-	BURPS1106A_1921	-	carbohydrate ABC transporter ATP-binding protein
1902	 72.16	0	1877447..1878466	+	339	126451811	-	BURPS1106A_1922	-	carbohydrate ABC transporter permease
1903	 76.19	+1	1878463..1878672	+	69	126454701	-	BURPS1106A_1923	-	hypothetical protein
1904	 69.05	0	1878669..1879760	+	363	126452815	-	BURPS1106A_1924	-	zinc-binding dehydrogenase family oxidoreductase
1905	 72.63	0	1879791..1881332	+	513	126452954	-	BURPS1106A_1925	-	carbohydrate kinase
1906	 73.23	+1	1881329..1882075	+	248	126454530	-	BURPS1106A_1926	-	short chain dehydrogenase
1907	 83.33	+2	1882156..1882287	+	43	126451883	-	BURPS1106A_1927	-	hypothetical protein
1908	 74.60	+1	1882284..1882409	+	41	126453981	-	BURPS1106A_1929	-	hypothetical protein
1909	 77.78	+1	1882370..1882612	-	80	126453115	-	BURPS1106A_1928	-	hypothetical protein
1910	 70.00	0	1882681..1883100	+	139	126455334	-	BURPS1106A_1930	-	hypothetical protein
1911	 72.13	0	1883135..1883848	+	237	126452200	-	BURPS1106A_1931	-	extracytoplasmic-function sigma-70 factor PvdS
1912	 73.25	+1	1883904..1884146	+	80	126453623	-	BURPS1106A_1932	-	mbtH domain-containing protein
1913	 71.16	0	1884220..1885221	+	333	126454451	-	BURPS1106A_1933	-	putative syringomycin biosynthesis enzyme
1914	 73.96	+1	1885259..1886149	+	296	126453693	-	BURPS1106A_1934	-	iron chelate ABC transporter ATP-binding protein
1915	 78.12	+1	1886146..1888266	+	706	126454568	-	BURPS1106A_1935	-	iron-hydroxamate transporter permease subunit
1916	 72.24	0	1888263..1889069	+	268	126455113	-	BURPS1106A_1936	-	ferric iron reductase protein
1917	 75.27	+1	1889066..1890262	+	398	126453996	-	BURPS1106A_1937	-	iron compound ABC transporter, periplasmic iron-compound-binding protein
1918	 69.97	0	1890440..1891015	-	191	126453284	-	BURPS1106A_1938	-	hypothetical protein
1919	 78.89	+2	1891224..1891403	+	59	126452245	-	BURPS1106A_1939	-	hypothetical protein
1920	 70.34	0	1891503..1893191	-	562	126453656	-	BURPS1106A_1940	-	cyclic peptide ABC transporter, ATP-binding protein MbaE
1921	 69.44	0	1893574..1893753	-	59	126452537	-	BURPS1106A_1941	-	hypothetical protein
67.62	MEAN

5.36	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.