IslandPath Analysis: Burkholderia ambifaria AMMD



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 66.96   STD DEV: 4.07
Burkholderia cepacia AMMD chromosome 2, complete sequence - 1..2646969
2346 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
865	 66.36	0	1007002..1008291	+	429	115358835	-	Bamb_4086	-	natural resistance-associated macrophage protein
866	 66.98	0	1008374..1009636	+	420	115358836	-	Bamb_4087	-	hypothetical protein
867	 67.91	0	1009676..1010077	-	133	115358837	-	Bamb_4088	-	hypothetical protein
868	 71.55	+1	1010193..1011215	-	340	115358838	-	Bamb_4089	-	oxidoreductase FAD/NAD(P)-binding subunit
869	 68.88	0	1011229..1012896	-	555	115358839	-	Bamb_4090	-	hydroxylamine reductase
870	 65.40	0	1013090..1013326	-	78	115358840	-	Bamb_4091	-	hypothetical protein
871	 68.24	0	1013508..1014908	-	466	115358841	-	Bamb_4092	-	major facilitator transporter
872	 69.56	0	1014937..1016181	-	414	115358842	-	Bamb_4093	-	FAD-dependent pyridine nucleotide-disulphide oxidoreductase
873	 67.29	0	1016178..1017140	-	320	115358843	-	Bamb_4094	-	glyoxalase/bleomycin resistance protein/dioxygenase
874	 68.54	0	1017159..1018649	-	496	115358844	-	Bamb_4095	-	betaine-aldehyde dehydrogenase
875	 70.53	0	1018748..1019575	-	275	115358845	-	Bamb_4096	-	L-aspartate dehydrogenase
876	 68.41	0	1019568..1021235	-	555	115358846	-	Bamb_4097	-	hypothetical protein
877	 67.17	0	1021228..1022025	-	265	115358847	-	Bamb_4098	-	short chain dehydrogenase
878	 66.55	0	1022022..1022879	-	285	115358848	-	Bamb_4099	-	IclR family transcriptional regulator
879	 72.48	+1	1022876..1023787	-	303	115358849	-	Bamb_4100	-	alpha/beta hydrolase fold
880	 64.96	0	1023807..1024334	-	175	115358850	-	Bamb_4101	-	cupin 2 domain-containing protein
881	 71.08	+1	1024374..1025144	-	256	115358851	-	Bamb_4102	-	short chain dehydrogenase
882	 66.85	0	1025137..1026207	-	356	115358852	-	Bamb_4103	-	Rieske (2Fe-2S) domain-containing protein
883	 66.03	0	1026262..1026573	-	103	115358853	-	Bamb_4104	-	hypothetical protein
884	 65.41	0	1026575..1026892	-	105	115358854	-	Bamb_4105	-	Rieske (2Fe-2S) domain-containing protein
885	 65.19	0	1027343..1028422	+	359	115358855	-	Bamb_4106	-	porin
886	 69.21	0	1028524..1029468	-	314	115358856	-	Bamb_4107	-	IclR family transcriptional regulator
887	 65.22	0	1029826..1030032	-	68	115358857	-	Bamb_4108	-	hypothetical protein
888	 68.65	0	1030361..1030966	-	201	115358858	-	Bamb_4109	-	2OG-Fe(II) oxygenase
889	 69.97	0	1031188..1032339	-	383	115358859	-	Bamb_4110	-	metallophosphoesterase
890	 69.51	0	1032708..1033094	+	128	115358860	-	Bamb_4111	-	hypothetical protein
891	 70.00	0	1033091..1034140	+	349	115358861	-	Bamb_4112	-	multidrug resistance protein MdtN
892	 71.37	+1	1034121..1036160	+	679	115358862	-	Bamb_4113	-	fusaric acid resistance protein region
893	 71.79	+1	1036147..1037706	+	519	115358863	-	Bamb_4114	-	outer membrane efflux protein
894	 66.53	0	1038060..1038767	+	235	115358864	-	Bamb_4115	-	MgtC/SapB transporter
895	 63.75	0	1038825..1039544	-	239	115358865	-	Bamb_4116	-	LuxR family transcriptional regulator
896	 69.14	0	1039618..1040061	+	147	115358866	-	Bamb_4117	-	hypothetical protein
897	 66.67	0	1040235..1040876	+	213	115358867	-	Bamb_4118	-	autoinducer synthesis protein
898	 71.56	+1	1040954..1041688	+	244	115358868	-	Bamb_4119	-	hypothetical protein
899	 64.63	0	1041944..1042435	+	163	115358869	-	Bamb_4120	-	hypothetical protein
900	 67.58	0	1042636..1042965	-	109	115358870	-	Bamb_4121	-	hypothetical protein
901	 65.13	0	1042983..1043633	-	216	115358871	-	Bamb_4122	-	GTP cyclohydrolase II
902	 60.61	-1	1043811..1044272	+	153	115358872	-	Bamb_4123	-	signal-transduction protein
903	 63.64	0	1044425..1044754	-	109	115358873	-	Bamb_4124	-	hypothetical protein
904	 61.40	-1	1045268..1045666	+	132	115358874	-	Bamb_4125	-	GreA/GreB family elongation factor
905	 60.95	-1	1045854..1046972	-	372	115358875	-	Bamb_4126	-	porin
906	 74.93	+1	1047583..1047957	+	124	115358876	-	Bamb_4127	-	hypothetical protein
907	 62.37	-1	1048147..1048239	+	30	115358877	-	Bamb_4128	-	short-chain dehydrogenase/reductase SDR
908	 66.67	0	1048271..1048480	-	69	115358878	-	Bamb_4129	-	hypothetical protein
909	 66.46	0	1048559..1049035	+	158	115358879	-	Bamb_4130	-	MerR family transcriptional regulator
910	 74.02	+1	1049081..1049842	-	253	115358880	-	Bamb_4131	-	short-chain dehydrogenase/reductase SDR
911	 72.81	+1	1049957..1050868	+	303	115358881	-	Bamb_4132	-	LysR family transcriptional regulator
912	 67.43	0	1050893..1051546	-	217	115358882	-	Bamb_4133	-	TetR family transcriptional regulator
913	 67.90	0	1051694..1052995	+	433	115358883	-	Bamb_4134	-	FAD-dependent pyridine nucleotide-disulphide oxidoreductase
914	 71.79	+1	1053027..1053416	+	129	115358884	-	Bamb_4135	-	hypothetical protein
915	 62.75	-1	1053413..1054741	-	442	115358885	-	Bamb_4136	-	sodium:dicarboxylate symporter
916	 66.72	0	1054917..1056668	-	583	115358886	-	Bamb_4137	-	gamma-glutamyltransferase
917	 64.73	0	1057004..1057882	+	292	115358887	-	Bamb_4138	-	RpiR family transcriptional regulator
918	 65.27	0	1057957..1059318	-	453	115358888	-	Bamb_4139	-	ABC transporter related
919	 64.33	0	1059315..1061069	-	584	115358889	-	Bamb_4140	-	binding-protein-dependent transport systems inner membrane component
920	 67.62	0	1061515..1062459	+	314	115358890	-	Bamb_4141	-	metallophosphoesterase
921	 62.57	-1	1062483..1062824	+	113	115358891	-	Bamb_4142	-	blue (type1) copper domain-containing protein
922	 69.30	0	1062930..1064069	+	379	115358892	-	Bamb_4143	-	patatin
923	 66.38	0	1064118..1064822	-	234	115358893	-	Bamb_4144	-	short-chain dehydrogenase/reductase SDR
924	 67.22	0	1064944..1065843	+	299	115358894	-	Bamb_4145	-	LysR family transcriptional regulator
925	 64.23	0	1065932..1066873	-	313	115358895	-	Bamb_4146	-	LysR family transcriptional regulator
926	 65.41	0	1066961..1068232	+	423	115358896	-	Bamb_4147	-	major facilitator transporter
927	 64.77	0	1068297..1069190	+	297	115358897	-	Bamb_4148	-	amidohydrolase 2
928	 67.31	0	1069378..1069686	+	102	115358898	-	Bamb_4149	-	ArsR family transcriptional regulator
929	 69.30	0	1069759..1070820	+	353	115358899	-	Bamb_4150	-	NADH:flavin oxidoreductase/NADH oxidase
930	 67.56	0	1070836..1071396	-	186	115358900	-	Bamb_4151	-	GCN5-related N-acetyltransferase
931	 70.26	0	1071447..1072058	+	203	115358901	-	Bamb_4152	-	lysine exporter protein LysE/YggA
932	 65.97	0	1072155..1072583	-	142	115358902	-	Bamb_4153	-	hypothetical protein
933	 69.06	0	1072853..1073773	-	306	115358903	-	Bamb_4154	-	phosphatidylinositol diacylglycerol-lyase
934	 69.99	0	1073780..1074802	+	340	115358904	-	Bamb_4155	-	LacI family transcription regulator
935	 69.45	0	1074812..1075672	-	286	115358905	-	Bamb_4156	-	binding-protein-dependent transport systems inner membrane component
936	 68.62	0	1075669..1076538	-	289	115358906	-	Bamb_4157	-	binding-protein-dependent transport systems inner membrane component
937	 69.28	0	1076573..1077913	-	446	115358907	-	Bamb_4158	-	extracellular solute-binding protein
938	 68.62	0	1077976..1079205	-	409	115358908	-	Bamb_4159	-	porin
939	 68.90	0	1079356..1080294	-	312	115358909	-	Bamb_4160	-	AraC family transcriptional regulator
940	 75.30	+2	1080355..1080945	-	196	115358910	-	Bamb_4161	-	hypothetical protein
941	 69.13	0	1080942..1082444	-	500	115358911	-	Bamb_4162	-	amino acid permease-associated region
942	 67.11	0	1082718..1084058	-	446	115358912	-	Bamb_4163	-	hypothetical protein
943	 69.33	0	1084131..1085633	-	500	115358913	-	Bamb_4164	-	betaine-aldehyde dehydrogenase
944	 64.10	0	1086055..1086717	-	220	115358914	-	Bamb_4165	-	hypothetical protein
945	 68.17	0	1086769..1087500	-	243	115358915	-	Bamb_4166	-	LuxR family transcriptional regulator
946	 67.47	0	1087658..1088533	-	291	115358916	-	Bamb_4167	-	protein of unknown function, zinc metallopeptidase putative
947	 65.17	0	1088627..1088893	+	88	115358917	-	Bamb_4168	-	hypothetical protein
948	 74.12	+1	1088974..1089765	+	263	115358918	-	Bamb_4169	-	short-chain dehydrogenase/reductase SDR
949	 70.38	0	1089971..1091020	+	349	115358919	-	Bamb_4170	-	LysR family transcriptional regulator
950	 71.83	+1	1091120..1091797	+	225	115358920	-	Bamb_4171	-	hypothetical protein
951	 70.45	0	1091886..1093205	+	439	115358921	-	Bamb_4172	-	major facilitator transporter
952	 69.23	0	1093255..1093956	+	233	115358922	-	Bamb_4173	-	hypothetical protein
953	 72.17	+1	1094033..1095013	-	326	115358923	-	Bamb_4174	-	NAD-dependent epimerase/dehydratase
954	 71.33	+1	1095113..1096012	+	299	115358924	-	Bamb_4175	-	LysR family transcriptional regulator
955	 71.94	+1	1096050..1096922	-	290	115358925	-	Bamb_4176	-	LysR family transcriptional regulator
956	 72.07	+1	1097079..1098539	+	486	115358926	-	Bamb_4177	-	major facilitator transporter
957	 64.72	0	1098937..1099347	+	136	115358927	-	Bamb_4178	-	endoribonuclease L-PSP
958	 71.43	+1	1099380..1100093	-	237	115358928	-	Bamb_4179	-	short chain dehydrogenase
959	 64.14	0	1100406..1101116	+	236	115358929	-	Bamb_4180	-	hypothetical protein
960	 71.85	+1	1101207..1102016	-	269	115358930	-	Bamb_4181	-	3-ketoacyl-(acyl-carrier-protein) reductase
961	 67.99	0	1102013..1102846	-	277	115358931	-	Bamb_4182	-	hypothetical protein
962	 71.45	+1	1103017..1103811	+	264	115358932	-	Bamb_4183	-	AraC family transcriptional regulator
963	 72.60	+1	1104171..1105130	+	319	115358933	-	Bamb_4184	-	hypothetical protein
964	 64.57	0	1105256..1105828	+	190	115358934	-	Bamb_4185	-	hypothetical protein
66.96	MEAN

4.07	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.