IslandPathversion 1.0

IslandPath Analysis: Burkholderia ambifaria AMMD



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 66.96 STD DEV: 4.07
Burkholderia cepacia AMMD chromosome 2, complete sequence - 1..2646969
2346 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1440	 69.36	0	1647982..1648836	-	284	115359410	-	Bamb_4664	-	shikimate 5-dehydrogenase
1441	 65.79	0	1648833..1649288	-	151	115359411	-	Bamb_4665	-	3-dehydroquinate dehydratase
1442	 68.89	0	1649545..1651437	+	630	115359412	-	Bamb_4666	-	4-hydroxyphenylpyruvate dioxygenase
1443	 66.29	0	1651724..1651987	+	87	115359413	-	Bamb_4667	-	hypothetical protein
1444	 66.29	0	1652063..1652857	-	264	115359414	-	Bamb_4668	-	AraC family transcriptional regulator
1445	 66.05	0	1653478..1654614	+	378	115359415	-	Bamb_4669	-	extracellular ligand-binding receptor
1446	 67.66	0	1654935..1656245	+	436	115359416	-	Bamb_4670	-	major facilitator transporter
1447	 64.38	0	1656377..1656814	-	145	115359417	-	Bamb_4671	-	DoxX family protein
1448	 69.08	0	1657039..1657494	-	151	115359418	-	Bamb_4672	-	RbsD or FucU transport
1449	 67.94	0	1657574..1657966	-	130	115359419	-	Bamb_4673	-	hypothetical protein
1450	 70.58	0	1658139..1658624	+	161	115359420	-	Bamb_4674	-	hypothetical protein
1451	 69.18	0	1658693..1660246	-	517	115359421	-	Bamb_4675	-	galactarate dehydratase
1452	 66.12	0	1660485..1661399	+	304	115359422	-	Bamb_4676	-	5-dehydro-4-deoxyglucarate dehydratase
1453	 66.49	0	1661535..1662086	-	183	115359423	-	Bamb_4677	-	hypothetical protein
1454	 63.29	0	1662224..1662460	+	78	115359424	-	Bamb_4678	-	hypothetical protein
1455	 71.93	+1	1662619..1664196	-	525	115359425	-	Bamb_4679	-	aldehyde dehydrogenase
1456	 66.80	0	1664391..1665848	+	485	115359426	-	Bamb_4680	-	d-galactonate transporter
1457	 67.91	0	1665910..1666635	-	241	115359427	-	Bamb_4681	-	peptidase M50
1458	 68.45	0	1666632..1667585	-	317	115359428	-	Bamb_4682	-	uncharacterized membrane-anchored protein
1459	 71.50	+1	1667841..1668689	+	282	115359429	-	Bamb_4683	-	XRE family transcriptional regulator
1460	 71.45	+1	1668708..1669919	-	403	115359430	-	Bamb_4684	-	acyl-CoA dehydrogenase type 2
1461	 67.02	0	1669916..1670773	-	285	115359431	-	Bamb_4685	-	hypothetical protein
1462	 69.25	0	1670830..1671486	-	218	115359432	-	Bamb_4686	-	binding-protein-dependent transport systems inner membrane component
1463	 71.34	+1	1671479..1672654	-	391	115359433	-	Bamb_4687	-	ABC transporter related
1464	 68.43	0	1672673..1674091	-	472	115359434	-	Bamb_4688	-	flavin-dependent oxidoreductase
1465	 66.67	0	1674102..1674962	-	286	115359435	-	Bamb_4689	-	NLPA lipoprotein
1466	 66.16	0	1675381..1676751	+	456	115359436	-	Bamb_4690	-	citrate carrier protein
1467	 70.47	0	1676871..1678787	+	638	115359437	-	Bamb_4691	-	periplasmic sensor signal transduction histidine kinase
1468	 69.02	0	1678777..1680138	+	453	115359438	-	Bamb_4692	-	two component, sigma54 specific, Fis family transcriptional regulator
1469	 68.13	0	1680164..1680505	+	113	115359439	-	Bamb_4693	-	hypothetical protein
1470	 66.55	0	1680767..1681618	+	283	115359440	-	Bamb_4694	-	alpha/beta hydrolase fold
1471	 62.36	-1	1681712..1682152	-	146	115359441	-	Bamb_4695	-	transmembrane pair domain-containing protein
1472	 69.36	0	1682251..1683141	+	296	115359442	-	Bamb_4696	-	LysR family transcriptional regulator
1473	 71.14	+1	1683321..1684862	-	513	115359443	-	Bamb_4697	-	RND efflux system outer membrane lipoprotein
1474	 65.42	0	1684873..1688088	-	1071	115359444	-	Bamb_4698	-	hydrophobe/amphiphile efflux-1 (HAE1) family protein
1475	 69.05	0	1688134..1689351	-	405	115359445	-	Bamb_4699	-	RND family efflux transporter MFP subunit
1476	 67.83	0	1689383..1690243	-	286	115359446	-	Bamb_4700	-	alpha/beta hydrolase domain-containing protein
1477	 65.07	0	1690414..1691418	+	334	115359447	-	Bamb_4701	-	LysR family transcriptional regulator
1478	 68.87	0	1691472..1692152	-	226	115359448	-	Bamb_4702	-	hypothetical protein
1479	 59.12	-1	1692385..1692702	-	105	115359449	-	Bamb_4703	-	H-NS histone family protein
1480	 61.86	-1	1692955..1693641	+	228	115359450	-	Bamb_4704	-	two component transcriptional regulator
1481	 67.68	0	1693964..1694260	+	98	115359451	-	Bamb_4705	-	hypothetical protein
1482	 67.50	0	1694497..1695576	-	359	115359452	-	Bamb_4706	-	purine nucleoside permease
1483	 69.20	0	1695803..1696393	-	196	115359453	-	Bamb_4707	-	lysine exporter protein LysE/YggA
1484	 71.60	+1	1696466..1697539	-	357	115359454	-	Bamb_4708	-	selenophosphate synthetase
1485	 71.21	+1	1697639..1698475	+	278	115359455	-	Bamb_4709	-	hypothetical protein
1486	 70.97	0	1698564..1700072	-	502	115359456	-	Bamb_4710	-	GntR family transcriptional regulator
1487	 66.82	0	1700141..1701481	+	446	115359457	-	Bamb_4711	-	4-aminobutyrate aminotransferase
1488	 67.82	0	1701572..1703041	+	489	115359458	-	Bamb_4712	-	succinic semialdehyde dehydrogenase
1489	 63.67	0	1703398..1704330	+	310	115359459	-	Bamb_4713	-	hypothetical protein
1490	 66.85	0	1704378..1705985	-	535	115359460	-	Bamb_4714	-	methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor
1491	 68.67	0	1706196..1707740	-	514	115359461	-	Bamb_4715	-	methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor
1492	 70.29	0	1708109..1708633	+	174	115359462	-	Bamb_4716	-	hypothetical protein
1493	 69.21	0	1708737..1709957	-	406	115359463	-	Bamb_4717	-	beta-ketoadipyl CoA thiolase
1494	 67.27	0	1710128..1710955	+	275	115359464	-	Bamb_4718	-	IclR family transcriptional regulator
1495	 73.96	+1	1711223..1711318	-	31	115359465	-	Bamb_4719	-	succinylglutamate desuccinylase/aspartoacylase
1496	 68.47	0	1711487..1712818	-	443	115359466	-	Bamb_4720	-	major facilitator transporter
1497	 68.51	0	1712882..1714072	-	396	115359467	-	Bamb_4721	-	amidohydrolase
1498	 64.43	0	1714447..1715517	-	356	115359468	-	Bamb_4722	-	NADH:flavin oxidoreductase/NADH oxidase
1499	 61.11	-1	1715573..1716148	-	191	115359469	-	Bamb_4723	-	isochorismatase hydrolase
1500	 62.92	0	1716179..1717033	-	284	115359470	-	Bamb_4724	-	pirin domain-containing protein
1501	 59.98	-1	1717254..1718135	+	293	115359471	-	Bamb_4725	-	LysR family transcriptional regulator
1502	 64.50	0	1718841..1720457	+	538	115359472	-	Bamb_4726	-	tryptophan halogenase
1503	 70.90	0	1720457..1721542	+	361	115359473	-	Bamb_4727	-	prnB; PrnB
1504	 64.32	0	1721587..1723287	+	566	115359474	-	Bamb_4728	-	FAD dependent oxidoreductase
1505	 67.57	0	1723312..1724424	+	370	115359475	-	Bamb_4729	-	Rieske (2Fe-2S) domain-containing protein
1506	 57.69	-2	1724476..1725522	-	348	115359476	-	Bamb_4730	-	alcohol dehydrogenase
1507	 61.11	-1	1725544..1726407	-	287	115359477	-	Bamb_4731	-	alpha/beta hydrolase fold
1508	 63.95	0	1726555..1727805	-	416	115359478	-	Bamb_4732	-	NADH:flavin oxidoreductase/NADH oxidase
1509	 59.40	-1	1727812..1728210	-	132	115359479	-	Bamb_4733	-	hypothetical protein
1510	 61.07	-1	1728265..1729122	-	285	115359480	-	Bamb_4734	-	alpha/beta hydrolase fold
1511	 65.53	0	1729151..1729939	-	262	115359481	-	Bamb_4735	-	short-chain dehydrogenase/reductase SDR
1512	 65.19	0	1729997..1731079	-	360	115359482	-	Bamb_4736	-	NADH:flavin oxidoreductase/NADH oxidase
1513	 66.19	0	1731211..1731840	+	209	115359483	-	Bamb_4737	-	TetR family transcriptional regulator
1514	 63.08	0	1731919..1732839	-	306	115359484	-	Bamb_4738	-	LysR family transcriptional regulator
1515	 65.72	0	1732950..1733687	+	245	115359485	-	Bamb_4739	-	short-chain dehydrogenase/reductase SDR
1516	 63.72	0	1733742..1734827	+	361	115359486	-	Bamb_4740	-	NADH:flavin oxidoreductase/NADH oxidase
1517	 63.95	0	1734911..1735168	-	85	115359487	-	Bamb_4741	-	hypothetical protein
1518	 61.29	-1	1735190..1736026	+	278	115359488	-	Bamb_4742	-	alpha/beta hydrolase fold
1519	 67.92	0	1736335..1736973	+	212	115359489	-	Bamb_4743	-	TetR family transcriptional regulator
1520	 70.63	0	1737019..1738002	+	327	115359490	-	Bamb_4744	-	alcohol dehydrogenase
1521	 63.90	0	1738082..1738660	+	192	115359491	-	Bamb_4745	-	uncharacterized peroxidase-related enzyme
1522	 70.98	0	1738780..1739661	-	293	115359492	-	Bamb_4746	-	short-chain dehydrogenase/reductase SDR
1523	 71.50	+1	1739835..1740413	-	192	115359493	-	Bamb_4747	-	TetR family transcriptional regulator
1524	 67.28	0	1740617..1742092	+	491	115359494	-	Bamb_4748	-	glucose-6-phosphate 1-dehydrogenase
1525	 68.78	0	1742215..1743159	-	314	115359495	-	Bamb_4749	-	LysR family transcriptional regulator
1526	 70.41	0	1743270..1744472	+	400	115359496	-	Bamb_4750	-	major facilitator transporter
1527	 66.67	0	1744502..1744825	+	107	115359497	-	Bamb_4751	-	hypothetical protein
1528	 70.77	0	1744842..1745792	+	316	115359498	-	Bamb_4752	-	luciferase family protein
1529	 66.42	0	1745926..1746732	+	268	115359499	dkgB	Bamb_4753	-	2,5-diketo-D-gluconate reductase B
1530	 70.16	0	1746798..1747913	+	371	115359500	-	Bamb_4754	-	NADH:flavin oxidoreductase/NADH oxidase
1531	 70.45	0	1747945..1748949	+	334	115359501	-	Bamb_4755	-	aldo/keto reductase
1532	 72.07	+1	1749139..1749675	+	178	115359502	-	Bamb_4756	-	hypothetical protein
1533	 65.29	0	1749781..1750506	-	241	115359503	-	Bamb_4757	-	O-methyltransferase family protein
1534	 67.93	0	1750540..1751172	+	210	115359504	-	Bamb_4758	-	TetR family transcriptional regulator
1535	 68.39	0	1751676..1753064	+	462	115359505	-	Bamb_4759	-	xanthine/uracil/vitamin C permease
1536	 68.79	0	1753237..1753896	+	219	115359506	-	Bamb_4760	-	hypothetical protein
1537	 68.41	0	1753901..1754302	-	133	115359507	-	Bamb_4761	-	hypothetical protein
1538	 67.64	0	1754299..1754607	-	102	115359508	-	Bamb_4762	-	hypothetical protein
1539	 72.57	+1	1754716..1755663	+	315	115359509	-	Bamb_4763	-	AraC family transcriptional regulator
66.96	MEAN

4.07	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.