IslandPathversion 1.0

IslandPath Analysis: Burkholderia ambifaria AMMD



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 66.96 STD DEV: 4.07
Burkholderia cepacia AMMD chromosome 2, complete sequence - 1..2646969
2346 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1134	 68.02	0	1282837..1283499	+	220	115359104	-	Bamb_4356	-	two component transcriptional regulator
1135	 70.66	0	1283496..1284872	+	458	115359105	-	Bamb_4357	-	periplasmic sensor signal transduction histidine kinase
1136	 67.11	0	1285083..1285529	+	148	115359106	-	Bamb_4358	-	MarR family transcriptional regulator
1137	 61.79	-1	1285568..1285936	+	122	115359107	-	Bamb_4359	-	antibiotic biosynthesis monooxygenase
1138	 71.48	+1	1286725..1287618	-	297	115359108	-	Bamb_4360	-	Beta-lactamase
1139	 70.15	0	1287735..1288625	+	296	115359109	-	Bamb_4361	-	LysR family transcriptional regulator
1140	 67.06	0	1289122..1289373	-	83	115359110	-	Bamb_4362	-	hypothetical protein
1141	 71.38	+1	1289472..1291697	-	741	115359111	-	Bamb_4363	-	Amylo-alpha-1,6-glucosidase
1142	 71.51	+1	1291854..1298969	-	2371	115359112	-	Bamb_4364	-	outer membrane autotransporter
1143	 68.09	0	1299703..1300335	-	210	115359113	-	Bamb_4365	-	hypothetical protein
1144	 71.21	+1	1300568..1301602	-	344	115359114	-	Bamb_4366	-	cell shape determining protein MreB
1145	 69.26	0	1301859..1304249	+	796	115359115	-	Bamb_4367	-	patatin
1146	 68.08	0	1304328..1305458	-	376	115359116	-	Bamb_4368	-	periplasmic sensor signal transduction histidine kinase
1147	 67.08	0	1305523..1306251	-	242	115359117	-	Bamb_4369	-	two component transcriptional regulator
1148	 65.77	0	1306365..1307366	+	333	115359118	-	Bamb_4370	-	glutaminase
1149	 64.39	0	1307534..1308454	+	306	115359119	-	Bamb_4371	-	LysR family transcriptional regulator
1150	 65.25	0	1308584..1309219	+	211	115359120	-	Bamb_4372	-	isochorismatase hydrolase
1151	 64.89	0	1309288..1310019	-	243	115359121	-	Bamb_4373	-	ribonuclease T2
1152	 68.38	0	1310201..1311604	-	467	115359122	-	Bamb_4374	-	hypothetical protein
1153	 64.97	0	1311967..1312614	+	215	115359123	-	Bamb_4375	-	hypothetical protein
1154	 71.51	+1	1312686..1313243	+	185	115359124	-	Bamb_4376	-	XRE family transcriptional regulator
1155	 67.53	0	1313352..1313933	+	193	115359125	-	Bamb_4377	-	metal-dependent phosphohydrolase
1156	 70.89	0	1314013..1315551	-	512	115359126	-	Bamb_4378	-	major facilitator transporter
1157	 67.66	0	1315729..1316634	+	301	115359127	-	Bamb_4379	-	LysR family transcriptional regulator
1158	 68.95	0	1316696..1317835	-	379	115359128	-	Bamb_4380	-	enoyl-CoA hydratase/isomerase
1159	 72.10	+1	1317832..1318623	-	263	115359129	-	Bamb_4381	-	enoyl-CoA hydratase
1160	 69.88	0	1318620..1319522	-	300	115359130	-	Bamb_4382	-	3-hydroxyisobutyrate dehydrogenase
1161	 67.45	0	1319541..1321070	-	509	115359131	-	Bamb_4383	-	methylmalonate-semialdehyde dehydrogenase
1162	 67.72	0	1321178..1322884	-	568	115359132	-	Bamb_4384	-	AMP-dependent synthetase and ligase
1163	 67.99	0	1323069..1324202	-	377	115359133	-	Bamb_4385	-	acyl-CoA dehydrogenase domain-containing protein
1164	 70.43	0	1324340..1325374	+	344	115359134	-	Bamb_4386	-	AraC family transcriptional regulator
1165	 73.89	+1	1325497..1327074	+	525	115359135	-	Bamb_4387	-	hypothetical protein
1166	 65.12	0	1327071..1327844	+	257	115359136	-	Bamb_4388	-	band 7 protein
1167	 64.08	0	1327919..1329196	-	425	115359137	-	Bamb_4389	-	phosphoserine phosphatase
1168	 69.72	0	1329619..1330602	+	327	115359138	-	Bamb_4390	-	hypothetical protein
1169	 71.19	+1	1330599..1332455	+	618	115359139	-	Bamb_4391	-	short chain dehydrogenase
1170	 65.45	0	1332490..1333395	+	301	115359140	-	Bamb_4392	-	metal-dependent hydrolase
1171	 64.93	0	1333498..1333785	+	95	115359141	-	Bamb_4393	-	hypothetical protein
1172	 69.53	0	1334037..1334420	+	127	115359142	-	Bamb_4394	-	hypothetical protein
1173	 62.72	-1	1334602..1334880	-	92	115359143	-	Bamb_4395	-	hypothetical protein
1174	 65.98	0	1335638..1336939	+	433	115359144	-	Bamb_4396	-	xanthine/uracil/vitamin C permease
1175	 68.69	0	1337012..1337899	-	295	115359145	-	Bamb_4397	-	LysR family transcriptional regulator
1176	 67.42	0	1338065..1338595	+	176	115359146	-	Bamb_4398	-	hypothetical protein
1177	 63.91	0	1338609..1338935	+	108	115359147	-	Bamb_4399	-	hypothetical protein
1178	 67.01	0	1338939..1339802	+	287	115359148	-	Bamb_4400	-	beta-lactamase domain-containing protein
1179	 63.19	0	1339948..1340235	-	95	115359149	-	Bamb_4401	-	hypothetical protein
1180	 63.77	0	1340481..1340756	-	91	115359150	-	Bamb_4402	-	hypothetical protein
1181	 70.75	0	1341099..1342985	+	628	115359151	-	Bamb_4403	-	Fis family GAF modulated sigma54 specific transcriptional regulator
1182	 67.66	0	1343127..1343429	+	100	115359152	-	Bamb_4404	-	ferredoxin
1183	 63.23	0	1343486..1343980	+	164	115359153	-	Bamb_4405	-	hypothetical protein
1184	 70.11	0	1344082..1344459	+	125	115359154	-	Bamb_4406	-	hypothetical protein
1185	 64.48	0	1344684..1345049	+	121	115359155	-	Bamb_4407	-	copper resistance protein CopC
1186	 66.00	0	1345102..1345548	+	148	115359156	-	Bamb_4408	-	hypothetical protein
1187	 68.07	0	1345666..1345950	-	94	115359157	-	Bamb_4409	-	hypothetical protein
1188	 69.50	0	1345963..1347372	-	469	115359158	-	Bamb_4410	-	serine/threonine protein kinase
1189	 64.36	0	1347610..1348608	-	332	115359159	-	Bamb_4411	-	transketolase, central region
1190	 64.18	0	1348605..1349450	-	281	115359160	-	Bamb_4412	-	transketolase domain-containing protein
1191	 65.91	0	1349488..1350813	-	441	115359161	-	Bamb_4413	-	major facilitator transporter
1192	 67.73	0	1350888..1351637	-	249	115359162	-	Bamb_4414	-	short-chain dehydrogenase/reductase SDR
1193	 64.44	0	1351800..1352699	-	299	115359163	-	Bamb_4415	-	LysR family transcriptional regulator
1194	 63.59	0	1352949..1353371	+	140	115359164	-	Bamb_4416	-	glyoxalase/bleomycin resistance protein/dioxygenase
1195	 68.25	0	1353409..1354293	-	294	115359165	-	Bamb_4417	-	LysR family transcriptional regulator
1196	 68.51	0	1354371..1355672	+	433	115359166	-	Bamb_4418	-	aminotransferase class-III
1197	 69.20	0	1355748..1356497	-	249	115359167	-	Bamb_4419	-	short-chain dehydrogenase/reductase SDR
1198	 68.00	0	1356543..1357520	+	325	115359168	-	Bamb_4420	-	AraC family transcriptional regulator
1199	 70.62	0	1357594..1358454	+	286	115359169	-	Bamb_4421	-	AraC family transcriptional regulator
1200	 65.93	0	1358499..1358906	+	135	115359170	-	Bamb_4422	-	hypothetical protein
1201	 66.56	0	1359083..1360006	-	307	115359171	-	Bamb_4424	-	hypothetical protein
1202	 65.75	0	1360020..1361006	-	328	115359172	-	Bamb_4425	-	hypothetical protein
1203	 61.25	-1	1361036..1362013	-	325	115359173	-	Bamb_4426	-	hypothetical protein
1204	 65.02	0	1362146..1362997	+	283	115359174	-	Bamb_4427	-	LysR family transcriptional regulator
1205	 67.09	0	1363089..1363790	-	233	115359175	-	Bamb_4428	-	ABC transporter related
1206	 66.54	0	1363790..1364563	-	257	115359176	livG	Bamb_4429	-	leucine/isoleucine/valine transporter ATP-binding subunit
1207	 66.51	0	1364560..1365831	-	423	115359177	livM	Bamb_4430	-	leucine/isoleucine/valine transporter permease subunit
1208	 65.05	0	1365843..1366769	-	308	115359178	-	Bamb_4431	-	inner-membrane translocator
1209	 64.43	0	1366942..1368060	-	372	115359179	-	Bamb_4432	-	extracellular ligand-binding receptor
1210	 61.46	-1	1368822..1369493	+	223	115359180	-	Bamb_4433	-	hypothetical protein
1211	 46.69	-2	1370047..1371603	+	518	115359181	-	Bamb_4434	-	hypothetical protein
1212	 65.89	0	1371940..1372452	-	170	115359182	-	Bamb_4435	-	OmpA/MotB domain-containing protein
1213	 68.09	0	1372537..1373805	-	422	115359183	-	Bamb_4436	-	diguanylate cyclase
1214	 69.92	0	1373802..1374509	-	235	115359184	-	Bamb_4437	-	hypothetical protein
1215	 64.30	0	1374957..1375844	+	295	115359185	-	Bamb_4438	-	LysR family transcriptional regulator
1216	 68.89	0	1376006..1377442	+	478	115359186	-	Bamb_4439	-	N-acyl-D-amino-acid deacylase
1217	 66.82	0	1377533..1378873	+	446	115359187	-	Bamb_4440	-	major facilitator transporter
1218	 71.07	+1	1378888..1380228	+	446	115359188	-	Bamb_4441	-	amidase
1219	 70.13	0	1380345..1381586	+	413	115359189	-	Bamb_4442	-	D-amino-acid dehydrogenase
1220	 66.80	0	1381597..1382358	-	253	115359190	-	Bamb_4443	-	GntR domain-containing protein
1221	 70.59	0	1382430..1383320	-	296	115359191	-	Bamb_4444	-	amidohydrolase 2
1222	 64.65	0	1383364..1384305	-	313	115359192	-	Bamb_4445	-	periplasmic binding protein/LacI transcriptional regulator
1223	 67.05	0	1384383..1385420	-	345	115359193	-	Bamb_4446	-	inner-membrane translocator
1224	 67.83	0	1385437..1386978	-	513	115359194	-	Bamb_4447	-	ABC transporter related
1225	 68.34	0	1386991..1387767	-	258	115359195	-	Bamb_4448	-	short chain dehydrogenase
1226	 67.37	0	1387821..1389098	-	425	115359196	-	Bamb_4449	-	mandelate racemase/muconate lactonizing protein
1227	 68.09	0	1389122..1389964	-	280	115359197	-	Bamb_4450	-	5-carboxymethyl-2-hydroxymuconate delta-isomerase
1228	 70.07	0	1390018..1390782	-	254	115359198	-	Bamb_4451	-	short-chain dehydrogenase/reductase SDR
1229	 70.10	0	1391456..1391746	+	96	115359199	-	Bamb_4452	-	hypothetical protein
1230	 65.02	0	1393112..1393414	+	100	115359200	-	Bamb_4454	-	hypothetical protein
1231	 68.50	0	1393607..1394803	-	398	115359201	-	Bamb_4455	-	gamma-butyrobetaine dioxygenase
1232	 71.47	+1	1394826..1395782	-	318	115359202	-	Bamb_4456	-	alpha/beta hydrolase domain-containing protein
1233	 68.51	0	1395808..1396296	-	162	115359203	-	Bamb_4457	-	thioesterase-like protein
66.96	MEAN

4.07	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.