IslandPathversion 1.0

IslandPath Analysis: Burkholderia ambifaria AMMD



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 66.96 STD DEV: 4.07
Burkholderia cepacia AMMD chromosome 2, complete sequence - 1..2646969
2346 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1017	 67.66	0	1163813..1165228	+	471	115358987	-	Bamb_4238	-	major facilitator transporter
1018	 68.56	0	1165577..1166788	+	403	115358988	-	Bamb_4239	-	hypothetical protein
1019	 61.64	-1	1166891..1167109	-	72	115358989	-	Bamb_4240	-	hypothetical protein
1020	 66.44	0	1167165..1167608	-	147	115358990	-	Bamb_4241	-	GCN5-related N-acetyltransferase
1021	 67.44	0	1167736..1168380	+	214	115358991	-	Bamb_4242	-	hydrolase
1022	 65.97	0	1168793..1169365	+	190	115358992	-	Bamb_4243	-	hypothetical protein
1023	 64.00	0	1169483..1170082	-	199	115358993	-	Bamb_4244	-	GCN5-related N-acetyltransferase
1024	 70.16	0	1170193..1171107	-	304	115358994	-	Bamb_4245	-	DNA-binding transcriptional regulator LysR
1025	 67.47	0	1171217..1172455	+	412	115358995	-	Bamb_4246	-	diaminopimelate decarboxylase
1026	 59.45	-1	1172822..1173874	-	350	115358996	-	Bamb_4247	-	IS605 family transposase OrfB
1027	 65.67	0	1174202..1175002	+	266	115358997	-	Bamb_4248	-	extracellular solute-binding protein
1028	 67.27	0	1175077..1175736	+	219	115358998	-	Bamb_4249	-	polar amino acid ABC transporter, inner membrane subunit
1029	 63.70	0	1175733..1176506	+	257	115358999	-	Bamb_4250	-	ABC transporter related
1030	 69.53	0	1176556..1177743	+	395	115359000	-	Bamb_4251	-	cystathionine beta-lyase
1031	 66.67	0	1177822..1178166	+	114	115359001	-	Bamb_4252	-	hypothetical protein
1032	 68.12	0	1178599..1178943	+	114	115359002	-	Bamb_4253	-	hypothetical protein
1033	 73.39	+1	1178945..1179985	+	346	115359003	-	Bamb_4254	-	hypothetical protein
1034	 69.30	0	1180036..1180719	-	227	115359004	-	Bamb_4255	-	LuxR family transcriptional regulator
1035	 66.09	0	1181002..1181694	+	230	115359005	-	Bamb_4256	-	hypothetical protein
1036	 70.76	0	1182124..1182612	+	162	115359006	-	Bamb_4257	-	hypothetical protein
1037	 70.02	0	1182596..1183042	+	148	115359007	-	Bamb_4258	-	lysozyme
1038	 69.35	0	1183374..1184342	+	322	115359008	-	Bamb_4259	-	poly (3-hydroxybutyrate) depolymerase
1039	 73.11	+1	1184398..1184940	+	180	115359009	-	Bamb_4260	-	hypothetical protein
1040	 69.57	0	1184937..1185557	+	206	115359010	-	Bamb_4261	-	LigA
1041	 64.72	0	1185670..1186287	+	205	115359011	-	Bamb_4262	-	hypothetical protein
1042	 63.92	0	1186358..1186975	+	205	115359012	-	Bamb_4263	-	hypothetical protein
1043	 70.61	0	1187034..1187921	-	295	115359013	-	Bamb_4264	-	hypothetical protein
1044	 71.95	+1	1188049..1189506	+	485	115359014	-	Bamb_4265	-	GntR family transcriptional regulator
1045	 66.60	0	1189549..1190982	-	477	115359015	-	Bamb_4266	-	putative nicotinate phosphoribosyltransferase
1046	 65.99	0	1191057..1192097	-	346	115359016	-	Bamb_4267	-	bifunctional nicotinamide mononucleotide adenylyltransferase/ADP-ribose pyrophosphatase
1047	 66.23	0	1192283..1192735	+	150	115359017	-	Bamb_4268	-	hypothetical protein
1048	 72.22	+1	1192743..1193120	-	125	115359018	-	Bamb_4269	-	S-adenosylmethionine decarboxylase related
1049	 68.90	0	1193263..1194783	-	506	115359019	-	Bamb_4270	-	hypothetical protein
1050	 68.07	0	1194793..1195863	-	356	115359020	-	Bamb_4271	-	putative virion core protein
1051	 62.27	-1	1195890..1196276	-	128	115359021	-	Bamb_4272	-	hypothetical protein
1052	 66.73	0	1196413..1197927	+	504	115359022	-	Bamb_4273	-	spermidine synthase
1053	 71.42	+1	1197927..1199546	+	539	115359023	-	Bamb_4274	-	hypothetical protein
1054	 69.69	0	1199695..1200456	+	253	115359024	-	Bamb_4275	-	cell wall hydrolase/autolysin
1055	 64.36	0	1200506..1200895	+	129	115359025	-	Bamb_4276	-	hypothetical protein
1056	 65.90	0	1200974..1201498	+	174	115359026	-	Bamb_4277	-	GCN5-related N-acetyltransferase
1057	 67.11	0	1201846..1203192	-	448	115359027	-	Bamb_4278	-	glutamine synthetase, catalytic region
1058	 66.31	0	1203339..1203896	-	185	115359028	-	Bamb_4279	-	XRE family transcriptional regulator
1059	 70.89	0	1203922..1205247	-	441	115359029	-	Bamb_4280	-	FAD dependent oxidoreductase
1060	 62.33	-1	1205501..1205938	-	145	115359030	-	Bamb_4281	-	AsnC family transcriptional regulator
1061	 68.60	0	1205935..1206864	-	309	115359031	-	Bamb_4282	-	homocysteine S-methyltransferase
1062	 64.62	0	1206968..1208137	-	389	115359032	-	Bamb_4283	-	cystathionine gamma-synthase
1063	 64.66	0	1208182..1208877	-	231	115359033	-	Bamb_4284	-	polar amino acid ABC transporter, inner membrane subunit
1064	 62.83	-1	1208891..1209568	-	225	115359034	-	Bamb_4285	-	polar amino acid ABC transporter, inner membrane subunit
1065	 63.46	0	1209640..1210419	-	259	115359035	-	Bamb_4286	-	extracellular solute-binding protein
1066	 63.16	0	1210451..1211248	-	265	115359036	-	Bamb_4287	-	ABC transporter related
1067	 67.71	0	1211329..1212759	-	476	115359037	-	Bamb_4288	-	aldehyde dehydrogenase
1068	 66.49	0	1212756..1213880	-	374	115359038	-	Bamb_4289	-	homoserine dehydrogenase
1069	 61.85	-1	1213987..1214484	-	165	115359039	-	Bamb_4290	-	AsnC family transcriptional regulator
1070	 67.65	0	1214516..1215226	-	236	115359040	-	Bamb_4291	-	hypothetical protein
1071	 59.13	-1	1215720..1216064	-	114	115359041	-	Bamb_4292	-	small multidrug resistance protein
1072	 60.21	-1	1216126..1217829	-	567	115359042	-	Bamb_4293	-	glucose-methanol-choline oxidoreductase
1073	 57.86	-2	1217923..1218762	-	279	115359043	-	Bamb_4294	-	binding-protein-dependent transport systems inner membrane component
1074	 59.62	-1	1218767..1220029	-	420	115359044	-	Bamb_4295	-	binding-protein-dependent transport systems inner membrane component
1075	 58.96	-1	1220047..1221084	-	345	115359045	-	Bamb_4296	-	ABC spermidine/putrescine transporter, periplasmic ligand binding protein
1076	 57.08	-2	1221119..1222213	-	364	115359046	-	Bamb_4297	-	spermidine/putrescine ABC transporter ATPase subunit
1077	 61.70	-1	1222393..1224891	-	832	115359047	-	Bamb_4298	-	L-carnitine dehydratase/bile acid-inducible protein F
1078	 58.61	-2	1225163..1226068	-	301	115359048	-	Bamb_4299	-	LysR family transcriptional regulator
1079	 59.10	-1	1226255..1228264	-	669	115359049	-	Bamb_4300	-	Beta-glucosidase
1080	 58.50	-2	1228339..1229820	-	493	115359050	-	Bamb_4301	-	hypothetical protein
1081	 59.94	-1	1230106..1230417	-	103	115359051	-	Bamb_4302	-	putative methyl-accepting chemotaxis sensory transducer
1082	 66.03	0	1230453..1231859	-	468	115359052	-	Bamb_4303	-	major facilitator transporter
1083	 67.56	0	1231979..1233541	-	520	115359053	-	Bamb_4304	-	monooxygenase, FAD-binding
1084	 65.75	0	1233547..1234422	-	291	115359054	-	Bamb_4305	-	5-oxopent-3-ene-1,2,5-tricarboxylate decarboxylase
1085	 66.67	0	1234419..1235354	-	311	115359055	-	Bamb_4306	-	glyoxalase/bleomycin resistance protein/dioxygenase
1086	 65.81	0	1235351..1236406	-	351	115359056	-	Bamb_4307	-	aminocarboxymuconate-semialdehyde decarboxylase
1087	 69.25	0	1236399..1236824	-	141	115359057	-	Bamb_4308	-	hypothetical protein
1088	 63.25	0	1236992..1237723	+	243	115359058	-	Bamb_4309	-	GntR family transcriptional regulator
1089	 57.03	-2	1238076..1238843	+	255	115359059	-	Bamb_4311	-	hypothetical protein
1090	 54.74	-2	1238860..1239228	+	122	115359060	-	Bamb_4312	-	hypothetical protein
1091	 66.86	0	1239496..1240524	-	342	115359061	proX	Bamb_4313	-	glycine betaine transporter periplasmic subunit
1092	 66.48	0	1240643..1241170	-	175	115359062	-	Bamb_4314	-	AsnC family transcriptional regulator
1093	 67.14	0	1241321..1241533	-	70	115359063	-	Bamb_4315	-	succinate-semialdehyde dehydrogenase (NAD(P)+)
1094	 64.36	0	1241682..1242071	-	129	115359064	-	Bamb_4316	-	carboxymuconolactone decarboxylase
1095	 65.11	0	1242139..1243167	-	342	115359065	proX	Bamb_4317	-	glycine betaine transporter periplasmic subunit
1096	 69.30	0	1243297..1244247	-	316	115359066	-	Bamb_4318	-	binding-protein-dependent transport systems inner membrane component
1097	 70.03	0	1244240..1245427	-	395	115359067	-	Bamb_4319	-	glycine betaine/L-proline ABC transporter, ATPase subunit
1098	 69.92	0	1245433..1245801	-	122	115359068	-	Bamb_4320	-	NIPSNAP family protein
1099	 71.17	+1	1245798..1246640	-	280	115359069	-	Bamb_4321	-	alpha/beta hydrolase fold
1100	 68.25	0	1246644..1247720	-	358	115359070	-	Bamb_4322	-	luciferase family protein
1101	 68.19	0	1247752..1249263	-	503	115359071	-	Bamb_4323	-	aldehyde dehydrogenase
1102	 69.92	0	1249292..1250275	-	327	115359072	-	Bamb_4324	-	flavin reductase domain-containing protein
1103	 70.48	0	1250740..1252548	-	602	115359073	-	Bamb_4325	-	hypothetical protein
1104	 69.47	0	1252693..1253298	+	201	115359074	-	Bamb_4326	-	hypothetical protein
1105	 72.59	+1	1253400..1254344	+	314	115359075	-	Bamb_4327	-	D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding
1106	 67.01	0	1254476..1255651	+	391	115359076	-	Bamb_4328	-	porin
1107	 56.28	-2	1255784..1256746	-	320	115359077	-	Bamb_4329	-	ferredoxin
1108	 55.31	-2	1256786..1257886	-	366	115359078	-	Bamb_4330	-	vanillate monooxygenase
1109	 55.30	-2	1258653..1259549	-	298	115359079	-	Bamb_4331	-	LysR family transcriptional regulator
1110	 65.01	0	1260053..1260415	-	120	115359080	-	Bamb_4332	-	hypothetical protein
1111	 62.93	0	1260449..1260769	+	106	115359081	-	Bamb_4333	-	hypothetical protein
1112	 60.06	-1	1260797..1261870	+	357	115359082	-	Bamb_4334	-	hypothetical protein
1113	 58.99	-1	1261946..1262362	+	138	115359083	-	Bamb_4335	-	hypothetical protein
1114	 60.53	-1	1262854..1263081	+	75	115359084	-	Bamb_4336	-	hypothetical protein
1115	 65.63	0	1263078..1263656	+	192	115359085	-	Bamb_4337	-	hypothetical protein
1116	 68.97	0	1263870..1264607	+	245	115359086	-	Bamb_4338	-	hypothetical protein
66.96	MEAN

4.07	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.