IslandPathversion 1.0

IslandPath Analysis: Brucella suis ATCC 23445



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 57.01 STD DEV: 4.26
Brucella suis ATCC 23445 chromosome I, complete sequence - 1..1923763
1921 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
165	 62.76	+1	182217..182933	+	238	163842442	rph	BSUIS_A0174	-	ribonuclease PH
166	 57.78	0	183107..183511	+	134	163842443	-	BSUIS_A0175	-	glyoxalase/bleomycin resistance protein/dioxygenase
167	 59.58	0	183514..184176	+	220	163842444	rdgB	BSUIS_A0176	-	putative deoxyribonucleotide triphosphate pyrophosphatase
168	 60.49	0	184173..185387	+	404	163842445	-	BSUIS_A0177	-	coproporphyrinogen III oxidase
169	 62.06	+1	185399..186310	+	303	163842446	-	BSUIS_A0178	-	hypothetical protein
170	 61.68	+1	186307..186687	+	126	163842447	-	BSUIS_A0179	-	hypothetical protein
171	 64.01	+1	186913..188340	+	475	163842448	cobA	BSUIS_A0180	-	uroporphyrin-III C-methyltransferase
172	 62.38	+1	188358..188660	+	100	163842449	-	BSUIS_A0181	-	hypothetical protein
173	 57.51	0	188681..190351	+	556	163842450	-	BSUIS_A0182	-	sulfite reductase (ferredoxin)
174	 63.37	+1	190341..191099	+	252	163842451	cysH	BSUIS_A0183	-	phosphoadenosine phosphosulfate reductase
175	 59.05	0	191152..191676	+	174	163842452	-	BSUIS_A0184	-	hypothetical protein
176	 53.40	0	191744..192037	+	97	163842453	-	BSUIS_A0185	-	stress responsive alpha-beta barrel domain-containing protein
177	 59.24	0	192038..192616	-	192	163842454	-	BSUIS_A0186	-	methylated-DNA-[protein]-cysteine S-methyltransferase
178	 56.91	0	192874..193119	+	81	163842455	-	BSUIS_A0187	-	hypothetical protein
179	 61.28	+1	193172..193561	-	129	163842456	-	BSUIS_A0188	-	BA14K family protein
180	 59.27	0	193875..197672	+	1265	163842457	metH	BSUIS_A0189	-	B12-dependent methionine synthase
181	 48.81	-1	197636..197803	-	55	163842458	-	BSUIS_A0190	-	hypothetical protein
182	 51.41	-1	197993..198700	+	235	163842459	solR	BSUIS_A0191	-	transcriptional activator protein solR
183	 59.52	0	198815..200185	+	456	163842460	-	BSUIS_A0192	-	aminotransferase
184	 55.70	0	200571..201473	+	300	163842461	cysD	BSUIS_A0193	-	sulfate adenylyltransferase subunit 2
185	 58.19	0	201473..203407	+	644	163842462	cysN	BSUIS_A0194	-	bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein
186	 61.58	+1	203410..204255	+	281	163842463	cysQ	BSUIS_A0195	-	3'(2'),5'-bisphosphate nucleotidase
187	 57.18	0	205520..206257	+	245	163842464	moaR	BSUIS_A0198	-	monoamine regulon transcriptional regulator
188	 34.09	-2	206232..206363	+	43	163842465	-	BSUIS_A0199	-	hypothetical protein
189	 58.21	0	206585..207376	+	263	163842466	-	BSUIS_A0200	-	DeoR family transcriptional regulator
190	 60.19	0	207458..208969	+	503	163842467	glpD	BSUIS_A0201	-	glycerol-3-phosphate dehydrogenase
191	 64.71	+1	209188..210156	+	322	163842468	-	BSUIS_A0202	-	Fis family transcriptional regulator
192	 58.10	0	210305..211822	+	505	163842469	thcA	BSUIS_A0203	-	EPTC-inducible aldehyde dehydrogenase
193	 59.03	0	212303..213337	+	344	163842470	adhT	BSUIS_A0204	-	alcohol dehydrogenase
194	 60.70	0	213359..213760	+	133	163842471	-	BSUIS_A0205	-	hypothetical protein
195	 59.82	0	213822..214844	+	340	163842472	-	BSUIS_A0206	-	alanine racemase
196	 61.64	+1	214936..216627	-	563	163842473	-	BSUIS_A0207	-	ABC transporter related
197	 41.82	-2	216878..217042	-	54	163842474	-	BSUIS_A0208	-	hypothetical protein
198	 59.07	0	217248..218681	+	477	163842475	aldHT	BSUIS_A0209	-	aldehyde dehydrogenase
199	 63.32	+1	218726..219502	-	258	163842476	-	BSUIS_A0210	-	binding-protein-dependent transport systems inner membrane component
200	 58.94	0	219499..220197	-	232	163842477	-	BSUIS_A0211	-	TenA family transcription regulator
201	 57.28	0	220194..221162	-	322	163842478	-	BSUIS_A0212	-	NMT1/THI5-like domain-containing protein
202	 61.11	0	221186..221797	-	203	163842479	thiE	BSUIS_A0213	-	thiamine-phosphate pyrophosphorylase
203	 62.78	+1	221794..222564	-	256	163842480	thiG	BSUIS_A0214	-	thiazole synthase
204	 59.09	0	222566..222763	-	65	163842481	thiS	BSUIS_A0215	-	thiamine biosynthesis protein ThiS
205	 63.28	+1	222760..223764	-	334	163842482	thiO	BSUIS_A0216	-	glycine oxidase ThiO
206	 62.79	+1	223764..224639	-	291	163842483	thiD	BSUIS_A0217	-	phosphomethylpyrimidine kinase
207	 57.91	0	225068..227179	+	703	163842484	-	BSUIS_A0219	-	diguanylate cyclase
208	 62.15	+1	227278..229758	+	826	163842485	-	BSUIS_A0220	-	heavy metal translocating P-type ATPase
209	 58.67	0	229738..230187	-	149	163842486	cueR	BSUIS_A0221	-	Cu(I)-responsive transcriptional regulator
210	 61.18	0	230293..231039	-	248	163842487	-	BSUIS_A0222	-	binding-protein-dependent transport systems inner membrane component
211	 63.58	+1	231036..231974	-	312	163842488	-	BSUIS_A0223	-	ABC transporter related
212	 62.36	+1	231971..233131	-	386	163842489	-	BSUIS_A0224	-	binding-protein-dependent transport systems inner membrane component
213	 55.90	0	233204..234271	-	355	163842490	-	BSUIS_A0225	-	substrate-binding region of ABC-type glycine betaine transport system
214	 45.80	-2	234304..234969	-	221	163842491	-	BSUIS_A0226	-	hypothetical protein
215	 60.51	0	235259..236524	-	421	163842492	gdhA	BSUIS_A0227	-	glutamate dehydrogenase
216	 51.79	-1	236715..236882	+	55	163842493	-	BSUIS_A0228	-	hypothetical protein
217	 59.89	0	236851..238104	+	417	163842494	-	BSUIS_A0229	-	sarcosine oxidase beta subunit family protein
218	 58.82	0	238123..238428	+	101	163842495	-	BSUIS_A0230	-	sarcosine oxidase delta subunit family protein
219	 57.66	0	241437..241991	+	184	163842496	-	BSUIS_A0232	-	sarcosine oxidase gamma subunit
220	 60.38	0	242949..243743	-	264	163842497	-	BSUIS_A0234	-	regulatory protein IclR
221	 57.73	0	243901..245220	+	439	163842498	-	BSUIS_A0235	-	extracellular solute-binding protein
222	 58.77	0	245281..246204	+	307	163842499	-	BSUIS_A0236	-	binding-protein-dependent transport systems inner membrane component
223	 59.59	0	246207..247082	+	291	163842500	-	BSUIS_A0237	-	binding-protein-dependent transport systems inner membrane component
224	 60.35	0	247090..248181	+	363	163842501	lacK	BSUIS_A0238	-	lactose transport ATP-binding protein lacK
225	 59.70	0	248184..249302	+	372	163842502	mdlA	BSUIS_A0239	-	mandelate racemase
226	 51.01	-1	249299..249643	+	114	163842503	-	BSUIS_A0240	-	hypothetical protein
227	 60.56	0	249636..250715	+	359	163842504	-	BSUIS_A0241	-	oxidoreductase domain-containing protein
228	 52.38	-1	250712..250816	+	34	163842505	-	BSUIS_A0242	-	hypothetical protein
229	 61.50	+1	250820..251554	+	244	163842506	polS	BSUIS_A0243	-	sorbitol dehydrogenase
230	 59.10	0	251595..252440	+	281	163842507	-	BSUIS_A0244	-	fumarylacetoacetate hydrolase domain-containing protein
231	 58.53	0	252454..253731	+	425	163842508	-	BSUIS_A0245	-	mandelate racemase/muconate lactonizing protein
232	 47.83	-2	254130..254681	-	183	163842509	-	BSUIS_A0246	-	hypothetical protein
233	 46.38	-2	255510..255647	-	45	163842510	-	BSUIS_A0247	-	hypothetical protein
234	 55.78	0	255884..256627	+	247	163842511	-	BSUIS_A0248	-	integrase DNA protein
235	 55.71	0	257589..257807	+	72	163842512	-	BSUIS_A0249	-	hypothetical protein
236	 52.70	-1	258014..258328	+	104	163842513	-	BSUIS_A0250	-	hypothetical protein
237	 59.75	0	258325..259206	+	293	163842514	-	BSUIS_A0251	-	virulence-associated protein E
238	 55.16	0	259203..260732	+	509	163842515	-	BSUIS_A0252	-	hypothetical protein
239	 50.16	-1	260702..261319	+	205	163842516	-	BSUIS_A0253	-	hypothetical protein
240	 53.69	0	261473..262489	+	338	163842517	-	BSUIS_A0254	-	hypothetical protein
241	 49.52	-1	262591..262800	+	69	163842518	-	BSUIS_A0255	-	hypothetical protein
242	 55.90	0	262791..264917	+	708	163842519	flgJ	BSUIS_A0256	-	peptidoglycan hydrolase flgJ
243	 56.89	0	264914..266959	+	681	163842520	-	BSUIS_A0257	-	elastin precursor
244	 52.61	-1	267160..267465	+	101	163842521	-	BSUIS_A0258	-	hypothetical protein
245	 55.56	0	268564..268770	+	68	163842522	-	BSUIS_A0259	-	hypothetical protein
246	 48.82	-1	270034..270582	+	182	163842523	-	BSUIS_A0260	-	hypothetical protein
247	 40.53	-2	270967..271452	-	161	163842524	-	BSUIS_A0261	-	hypothetical protein
248	 53.66	0	271990..272235	-	81	163842525	-	BSUIS_A0262	-	helix-turn-helix domain-containing protein
249	 54.07	0	272313..272558	+	81	163842526	-	BSUIS_A0263	-	hypothetical protein
250	 51.89	-1	272624..272914	+	96	163842527	-	BSUIS_A0264	-	hypothetical protein
251	 56.81	0	272911..273549	+	212	163842528	-	BSUIS_A0265	-	hypothetical protein
252	 56.32	0	273551..273724	+	57	163842529	-	BSUIS_A0266	-	hypothetical protein
253	 52.64	-1	273721..274725	+	334	163842530	-	BSUIS_A0267	-	hypothetical protein
254	 46.86	-2	275030..275857	-	275	163842531	-	BSUIS_A0268	-	hypothetical protein
255	 59.72	0	276836..277051	-	71	163842532	-	BSUIS_A0270	-	zinc-binding protein
256	 61.24	0	277061..277687	-	208	163842533	maf	BSUIS_A0271	-	Maf-like protein
257	 52.05	-1	277721..277939	-	72	163842534	infA	BSUIS_A0272	-	translation initiation factor IF-1
258	 58.65	0	278051..278524	-	157	163842535	-	BSUIS_A0273	-	protein tyrosine phosphatase
259	 58.80	0	278531..279013	-	160	163842536	-	BSUIS_A0274	-	hypothetical protein
260	 61.87	+1	279020..280312	-	430	163842537	hisD	BSUIS_A0275	-	histidinol dehydrogenase
261	 55.33	0	280387..280827	-	146	163842538	-	BSUIS_A0276	-	hypothetical protein
262	 61.01	0	281098..282387	-	429	163842539	murA	BSUIS_A0277	-	UDP-N-acetylglucosamine 1-carboxyvinyltransferase
263	 53.56	0	282553..282903	+	116	163842540	-	BSUIS_A0278	-	hypothetical protein
264	 59.44	0	282610..282789	-	59	163842541	-	BSUIS_A0279	-	hypothetical protein
57.01	MEAN

4.26	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.