IslandPathversion 1.0

IslandPath Analysis: Brucella abortus S19



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 57.60 STD DEV: 3.62
Brucella abortus S19 chromosome 1, complete sequence - 1..2122487
1967 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
928	 59.55	0	1014215..1014748	+	177	189024196	-	BAbS19_I09750	-	7,8-Dihydro-6-hydroxymethylpterin-pyrophosphokina se, HPPK
929	 56.93	0	1014863..1015396	-	177	189024197	-	BAbS19_I09760	-	hypothetical protein
930	 59.50	0	1015672..1016745	-	357	189024198	-	BAbS19_I09770	-	Conserved hypothetical protein 1620
931	 58.59	0	1016742..1018202	-	486	189024199	-	BAbS19_I09780	-	ATP/GTP-binding site motif A (P-loop)
932	 54.09	0	1018295..1018795	-	166	189024200	-	BAbS19_I09790	-	hypothetical protein
933	 52.28	-1	1019191..1019607	+	138	189024201	-	BAbS19_I09800	-	Zn-finger, prokaryotic DksA/TraR C4 type
934	 60.30	0	1019753..1021009	-	418	189024202	-	BAbS19_I09810	-	Proline-rich extensin
935	 58.69	0	1021376..1024072	+	898	189024203	-	BAbS19_I09820	-	sensory box histidine kinase/response regulator
936	 56.97	0	1024223..1025305	+	360	189024204	-	BAbS19_I09830	-	hypothetical protein BruAb1_1045
937	 55.56	0	1025336..1026658	+	440	189024205	-	BAbS19_I09840	-	Beta-lactamase
938	 51.18	-1	1026639..1027865	-	408	189024206	-	BAbS19_I09850	-	Mechanosensitive (MS) ion channel
939	 57.49	0	1027955..1031737	-	1260	189024207	-	BAbS19_I09860	-	Ribonucleotide reductase large subunit
940	 59.51	0	1032439..1032927	-	162	189024208	-	BAbS19_I09870	-	NUDIX hydrolase
941	 57.17	0	1033154..1033753	-	199	189024209	-	BAbS19_I09880	-	Phosphoribosyltransferase
942	 59.34	0	1034116..1034961	-	281	189024210	-	BAbS19_I09890	-	Universal stress protein (Usp)
943	 57.44	0	1035039..1035797	-	252	189024211	-	BAbS19_I09900	-	Molybdenum cofactor biosynthesis protein
944	 59.00	0	1035958..1036557	+	199	189024212	-	BAbS19_I09910	-	Flavodoxin
945	 50.67	-1	1036535..1036684	-	49	189024213	-	BAbS19_I09920	-	hypothetical protein
946	 53.94	-1	1036862..1038118	+	418	189024214	-	BAbS19_I09930	-	threonine dehydratase
947	 61.97	+1	1038185..1039780	+	531	189024215	-	BAbS19_I09940	-	ATP-dependent RNA helicase, DEAD/DEAH box family
948	 58.11	0	1039951..1040979	+	342	189024216	-	BAbS19_I09950	-	cysteine synthase
949	 55.91	0	1040982..1041725	+	247	189024217	-	BAbS19_I09960	-	Alanyl-transfer RNA synthetase
950	 58.25	0	1041752..1042606	+	284	189024218	-	BAbS19_I09970	-	Thiosulfate sulfurtransferase
951	 55.17	0	1042608..1043129	+	173	189024219	-	BAbS19_I09980	-	GCN5-related N-acetyltransferase
952	 55.33	0	1043316..1044806	-	496	189024220	-	BAbS19_I09990	-	Acetyl-CoA hydrolase/transferase
953	 56.76	0	1046612..1047277	-	221	189024221	-	BAbS19_I10020	-	HlyD family secretion protein
954	 55.84	0	1049986..1050816	-	276	189024222	-	BAbS19_I10070	-	SAM (and some other nucleotide) binding motif
955	 55.28	0	1050925..1051890	-	321	189024223	-	BAbS19_I10080	-	Bile acid:sodium symporter
956	 53.97	-1	1052019..1053026	-	335	189024224	-	BAbS19_I10090	-	NAD-dependent epimerase/dehydratase
957	 53.45	-1	1053171..1053995	+	274	189024225	-	BAbS19_I10100	-	ATP/GTP-binding site motif A (P-loop)
958	 56.37	0	1054004..1054615	-	203	189024226	-	BAbS19_I10110	-	nitrilotriacetate monooxygenase component B
959	 58.12	0	1054658..1055242	-	194	189024227	-	BAbS19_I10120	-	Nitroreductase family
960	 57.67	0	1055462..1056472	+	336	189024228	-	BAbS19_I10130	-	hypothetical protein
961	 56.45	0	1056527..1058503	-	658	189024229	-	BAbS19_I10140	-	threonyl-tRNA synthetase
962	 58.54	0	1058718..1059911	-	397	189024230	-	BAbS19_I10150	-	D-alanyl-D-alanine carboxypeptidase 1, S11 family
963	 59.68	0	1060057..1060428	-	123	189024231	-	BAbS19_I10160	-	Protein of unknown function DUF37
964	 57.37	0	1060430..1060870	-	146	189024232	-	BAbS19_I10170	-	Nitrogen-fixing NifU-like, N-terminal
965	 57.01	0	1061134..1061775	+	213	189024233	-	BAbS19_I10180	-	GTP cyclohydrolase I
966	 57.38	0	1061798..1062217	+	139	189024234	-	BAbS19_I10190	-	phosphoribosyl-AMP cyclohydrolase
967	 59.39	0	1062434..1063381	+	315	189024235	-	BAbS19_I10200	-	Patatin
968	 53.82	-1	1063854..1065098	+	414	189024236	-	BAbS19_I10210	-	Phage integrase
969	 53.58	-1	1065237..1065641	+	134	189024237	-	BAbS19_I10220	-	hypothetical protein
970	 54.66	0	1067388..1068320	-	310	189024238	-	BAbS19_I10230	-	hypothetical protein
971	 58.25	0	1068986..1069603	-	205	189024239	-	BAbS19_I10240	-	Resolvase, N-terminal
972	 54.31	0	1070730..1071077	-	115	189024240	-	BAbS19_I10250	-	BRO family, N-terminal
973	 56.79	0	1073055..1074239	-	394	189024241	-	BAbS19_I10280	-	glutaryl-CoA dehydrogenase
974	 59.15	0	1074341..1075192	+	283	189024242	-	BAbS19_I10290	-	Bacterial regulatory protein LysR
975	 59.55	0	1075242..1076225	-	327	189024243	-	BAbS19_I10300	-	Bacterial luciferase
976	 57.38	0	1076306..1079395	-	1029	189024244	-	BAbS19_I10310	-	Acriflavin resistance protein
977	 57.28	0	1079405..1080586	-	393	189024245	-	BAbS19_I10320	-	hypothetical protein
978	 54.14	0	1080694..1081260	+	188	189024246	-	BAbS19_I10330	-	Bacterial regulatory protein TetR, HTH motif
979	 58.99	0	1081297..1082430	-	377	189024247	-	BAbS19_I10340	-	Queuine tRNA-ribosyltransferase
980	 58.42	0	1082427..1083518	-	363	189024248	-	BAbS19_I10350	-	Queuosine biosynthesis protein
981	 59.57	0	1083640..1084146	-	168	189024249	-	BAbS19_I10360	-	Peptidyl-prolyl cis-trans isomerase, cyclophilin type
982	 55.84	0	1084209..1084799	-	196	189024250	-	BAbS19_I10370	-	Peptidyl-prolyl cis-trans isomerase, cyclophilin type
983	 55.76	0	1084820..1085314	-	164	189024251	-	BAbS19_I10380	-	Coenzyme A biosynthesis protein
984	 55.00	0	1085530..1085769	-	79	189024252	-	BAbS19_I10390	-	hypothetical protein
985	 58.93	0	1085825..1088629	-	934	189024253	-	BAbS19_I10400	-	DNA gyrase subunit A
986	 56.67	0	1088881..1089510	+	209	189024254	-	BAbS19_I10410	-	Multiple antibiotic resistance (MarC)-related protein
987	 55.82	0	1089601..1090107	-	168	189024255	-	BAbS19_I10420	-	Guanylate kinase/L-type calcium channel region
988	 54.99	0	1090366..1091127	+	253	189024256	-	BAbS19_I10430	-	Bacterial regulatory protein, GntR family
989	 44.28	-2	1091270..1091671	+	133	189024257	-	BAbS19_I10440	-	hypothetical protein
990	 56.41	0	1091827..1092333	-	168	189024258	-	BAbS19_I10450	-	Single-strand binding protein
991	 58.36	0	1093232..1096156	+	974	189024259	-	BAbS19_I10460	-	excinuclease ABC subunit A
992	 60.51	0	1096343..1096618	-	91	189024260	-	BAbS19_I10470	-	Histone-like bacterial DNA-binding protein
993	 56.79	0	1096799..1099237	-	812	189024261	-	BAbS19_I10480	-	Lon, ATP-dependent protease La
994	 55.00	0	1099558..1099677	+	39	189024262	-	BAbS19_I10490	-	hypothetical protein
995	 56.31	0	1099669..1100943	-	424	189024263	-	BAbS19_I10500	-	ATP-dependent protease ATP-binding subunit
996	 56.51	0	1101325..1101954	-	209	189024264	-	BAbS19_I10510	-	Clp protease
997	 59.55	0	1102059..1103477	-	472	189024265	-	BAbS19_I10520	-	GTP1/OBG
998	 45.57	-2	1103668..1103904	-	78	189024266	-	BAbS19_I10530	-	Host factor Hfq
999	 51.34	-1	1104133..1104876	-	247	189024267	-	BAbS19_I10540	-	hypothetical protein
1000	 56.28	0	1105012..1106388	-	458	189024268	-	BAbS19_I10550	-	TrkA-N:TrkA potassium uptake protein
1001	 60.21	0	1106413..1107774	-	453	189024269	-	BAbS19_I10560	-	Nitrogen assimilation regulatory protein NTRX
1002	 57.47	0	1107776..1110058	-	760	189024270	-	BAbS19_I10570	-	nitrogen regulation protein NtrY
1003	 59.42	0	1110191..1111666	-	491	189024271	-	BAbS19_I10580	-	nitrogen regulation protein NtrC
1004	 59.67	0	1111663..1112805	-	380	189024272	-	BAbS19_I10590	-	NtrB, nitrogen regulation protein NtrB
1005	 58.68	0	1112805..1113806	-	333	189024273	-	BAbS19_I10600	-	nitrogen regulation protein NifR3
1006	 58.18	0	1113830..1115173	+	447	189024274	-	BAbS19_I10610	-	4-diphosphocytidyl-2C-methyl-D-erythritol synthase
1007	 59.24	0	1115170..1115667	+	165	189024275	-	BAbS19_I10620	-	CinA, C-terminal
1008	 57.39	0	1115744..1116562	+	272	189024276	-	BAbS19_I10630	-	Glucose 1-dehydrogenase II
1009	 53.16	-1	1116544..1117002	-	152	189024277	-	BAbS19_I10640	-	Hypothetical Cytosolic Protein
1010	 56.45	0	1117008..1117976	-	322	189024278	-	BAbS19_I10650	-	Lipoate synthase
1011	 64.65	+1	1118086..1118283	-	65	189024279	-	BAbS19_I10660	-	hypothetical protein
1012	 58.95	0	1118366..1119829	-	487	189024280	-	BAbS19_I10670	-	dihydrolipoamide dehydrogenase
1013	 59.67	0	1119912..1121255	-	447	189024281	-	BAbS19_I10680	-	AceF, pyruvate dehydrogenase complex, E2 component
1014	 57.58	0	1121273..1122658	-	461	189024282	-	BAbS19_I10690	-	dihydrolipoamide acetyltransferase
1015	 55.91	0	1122677..1123717	-	346	189024283	-	BAbS19_I10700	-	Dehydrogenase, E1 component
1016	 49.70	-2	1123856..1124185	-	109	189024284	-	BAbS19_I10710	-	Septum formation initiator
1017	 49.66	-2	1124457..1125038	-	193	189024285	-	BAbS19_I10720	-	hypothetical protein BruAb1_1137
1018	 57.51	0	1125375..1126652	-	425	189024286	-	BAbS19_I10730	-	Enolase
1019	 57.07	0	1126839..1127672	-	277	189024287	-	BAbS19_I10740	-	2-dehydro-3-deoxyphosphooctonate aldolase
1020	 55.56	0	1127778..1129406	-	542	189024288	-	BAbS19_I10750	-	Glutamine amidotransferase class-I
1021	 57.29	0	1129677..1130369	-	230	189024289	-	BAbS19_I10760	-	ErfK/YbiS/YcfS/YnhG
1022	 63.53	+1	1130623..1131069	-	148	189024290	-	BAbS19_I10770	-	Preprotein translocase SecG subunit
1023	 59.61	0	1131169..1131933	-	254	189024291	-	BAbS19_I10780	-	Triosephosphate isomerase
1024	 59.25	0	1132152..1134038	+	628	189024292	-	BAbS19_I10790	-	peptidyl-prolyl cis-trans isomerase D
1025	 61.76	+1	1134053..1135072	+	339	189024293	-	BAbS19_I10800	-	Glycosyl transferase, family
1026	 58.24	0	1135089..1135895	+	268	189024294	-	BAbS19_I10810	-	Indole-3-glycerol phosphate synthase
1027	 60.44	0	1135892..1136389	+	165	189024295	-	BAbS19_I10820	-	Molybdopterin cofactor biosynthesis protein MoaC
57.60	MEAN

3.62	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.