IslandPathversion 1.0

IslandPath Analysis: Brucella abortus S19



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 57.60 STD DEV: 3.62
Brucella abortus S19 chromosome 1, complete sequence - 1..2122487
1967 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
866	 58.26	0	946516..947550	-	344	189024134	-	BAbS19_I09090	-	MoaA/nifB/pqqE family protein
867	 55.28	0	947737..948096	+	119	189024135	-	BAbS19_I09100	-	hypothetical protein
868	 57.42	0	948164..948736	-	190	189024136	-	BAbS19_I09110	-	Salicylate hydroxylase
869	 58.33	0	949615..951234	-	539	189024137	-	BAbS19_I09120	-	Fumarate hydratase class I, aerobic
870	 53.97	-1	954344..954595	-	83	189024138	-	BAbS19_I09150	-	Transglycosylase-associated protein
871	 50.78	-1	955104..956129	-	341	189024139	-	BAbS19_I09160	-	Phage integrase
872	 57.12	0	956304..957350	+	348	189024140	-	BAbS19_I09170	-	hypothetical protein
873	 51.52	-1	957502..957732	+	76	189024141	-	BAbS19_I09180	-	hypothetical protein
874	 57.61	0	957729..958004	+	91	189024142	-	BAbS19_I09190	-	hypothetical protein
875	 56.17	0	958180..958503	+	107	189024143	-	BAbS19_I09200	-	hypothetical protein
876	 54.59	0	958849..959055	+	68	189024144	-	BAbS19_I09210	-	outer membrane protein, putative
877	 55.56	0	960424..960738	-	104	189024145	-	BAbS19_I09220	-	hypothetical protein
878	 47.66	-2	960738..961058	-	106	189024146	-	BAbS19_I09230	-	hypothetical protein
879	 58.04	0	961245..961754	+	169	189024147	-	BAbS19_I09240	-	Queuine tRNA-ribosyltransferase
880	 58.81	0	961824..962192	+	122	189024148	-	BAbS19_I09250	-	Transposase
881	 49.08	-2	962309..962581	+	90	189024149	-	BAbS19_I09260	-	IS711, transposase orfB
882	 47.81	-2	963837..965135	+	432	189024150	-	BAbS19_I09290	-	hypothetical protein
883	 46.63	-2	965461..966693	+	410	189024151	-	BAbS19_I09300	-	glycosyltransferase
884	 45.00	-2	966690..968249	+	519	189024152	-	BAbS19_I09310	-	Glycosyl transferase, group 1
885	 59.68	0	968596..969354	+	252	189024153	-	BAbS19_I09320	-	Secretion activator protein
886	 51.11	-1	969839..969973	+	44	189024154	-	BAbS19_I09330	-	hypothetical protein
887	 46.08	-2	970075..970176	+	33	189024155	-	BAbS19_I09340	-	hypothetical protein
888	 55.46	0	970313..970660	+	115	189024156	-	BAbS19_I09350	-	Arsenate reductase
889	 57.82	0	971031..972296	+	421	189024157	-	BAbS19_I09360	-	Rare lipoprotein A
890	 58.19	0	972407..973597	+	396	189024158	-	BAbS19_I09370	-	D-alanyl-D-alanine carboxypeptidase 1, S11 family
891	 57.52	0	973679..974323	+	214	189024159	-	BAbS19_I09380	-	Thymidylate kinase
892	 59.74	0	974320..975402	+	360	189024160	-	BAbS19_I09390	-	Replication factor C conserved domain protein
893	 57.82	0	975571..977118	+	515	189024161	-	BAbS19_I09400	-	methionine--tRNA ligase
894	 55.72	0	977124..977918	+	264	189024162	-	BAbS19_I09410	-	Sec-independent protein TATD
895	 56.53	0	977921..978739	+	272	189024163	-	BAbS19_I09420	-	Beta-lactamase-like protein
896	 59.61	0	978789..980588	-	599	189024164	-	BAbS19_I09430	-	beta-(1--2)glucan export ATP-binding protein
897	 59.33	0	980901..981881	+	326	189024165	-	BAbS19_I09440	-	Pseudouridine synthase
898	 54.22	0	981884..982807	+	307	189024166	-	BAbS19_I09450	-	Protein of unknown function DUF6
899	 57.51	0	982804..983469	+	221	189024167	-	BAbS19_I09460	-	hydrolase, haloacid dehalogenase-like family
900	 58.49	0	983511..984293	+	260	189024168	-	BAbS19_I09470	-	Beta tubulin
901	 55.46	0	984419..985828	-	469	189024169	-	BAbS19_I09480	-	GlnA, glutamine synthetase, type I
902	 53.69	-1	985976..986314	-	112	189024170	-	BAbS19_I09490	-	Nitrogen regulatory protein P-II
903	 60.49	0	986621..988126	+	501	189024171	-	BAbS19_I09500	-	YjeF family protein
904	 61.46	+1	988157..988348	-	63	189024172	-	BAbS19_I09510	-	hypothetical protein
905	 57.45	0	988426..989130	-	234	189024173	-	BAbS19_I09520	-	phosphoglycolate phosphatase
906	 50.88	-1	989185..989298	+	37	189024174	-	BAbS19_I09530	-	hypothetical protein
907	 57.37	0	989477..990175	+	232	189024175	-	BAbS19_I09540	-	ribose-5-phosphate isomerase A
908	 59.59	0	990201..990737	+	178	189024176	-	BAbS19_I09550	-	hypothetical protein
909	 55.70	0	990891..992285	+	464	189024177	-	BAbS19_I09560	-	glutathione reductase
910	 58.91	0	992494..993873	+	459	189024178	-	BAbS19_I09570	-	Aminoacyl-tRNA synthetase, class I
911	 53.85	-1	993987..994337	+	116	189024179	-	BAbS19_I09580	-	Prokaryotic diacylglycerol kinase
912	 56.85	0	994402..996081	+	559	189024180	-	BAbS19_I09590	-	NAD(+) synthase
913	 57.28	0	996093..997466	+	457	189024181	-	BAbS19_I09600	-	glutamyl-tRNA synthetase
914	 57.10	0	997384..998136	-	250	189024182	-	BAbS19_I09610	-	Proline-rich extensin
915	 59.66	0	998280..1000604	-	774	189024183	-	BAbS19_I09620	-	Phosphate acetyl/butaryl transferase
916	 57.70	0	1000822..1001802	-	326	189024184	-	BAbS19_I09630	-	Mandelate racemase/muconate lactonizing enzyme
917	 55.92	0	1001866..1003038	+	390	189024185	-	BAbS19_I09640	-	Sulfate transporter/antisigma-factor
918	 56.25	0	1003249..1004112	+	287	189024186	-	BAbS19_I09650	-	ABC transporter ATP-binding protein
919	 55.52	0	1004116..1005111	+	331	189024187	-	BAbS19_I09660	-	ABC transporter, periplasmic substrate-binding protein
920	 54.92	0	1005108..1005737	+	209	189024188	-	BAbS19_I09670	-	Protein of unknown function DUF330
921	 59.67	0	1005977..1010638	-	1553	189024189	-	BAbS19_I09680	-	hypothetical protein
922	 48.61	-2	1010868..1011083	+	71	189024190	-	BAbS19_I09690	-	hypothetical protein
923	 60.80	0	1011254..1011577	+	107	189024191	-	BAbS19_I09700	-	Adrenodoxin
924	 55.86	0	1011895..1012218	+	107	189024192	-	BAbS19_I09710	-	Thioredoxin reductase
925	 56.52	0	1012223..1012843	-	206	189024193	-	BAbS19_I09720	-	hypothetical protein
926	 57.98	0	1013001..1013840	+	279	189024194	-	BAbS19_I09730	-	Dihydropteroate synthase, DHPS
927	 52.78	-1	1013859..1014218	+	119	189024195	-	BAbS19_I09740	-	Dihydroneopterin aldolase
928	 59.55	0	1014215..1014748	+	177	189024196	-	BAbS19_I09750	-	7,8-Dihydro-6-hydroxymethylpterin-pyrophosphokina se, HPPK
929	 56.93	0	1014863..1015396	-	177	189024197	-	BAbS19_I09760	-	hypothetical protein
930	 59.50	0	1015672..1016745	-	357	189024198	-	BAbS19_I09770	-	Conserved hypothetical protein 1620
931	 58.59	0	1016742..1018202	-	486	189024199	-	BAbS19_I09780	-	ATP/GTP-binding site motif A (P-loop)
932	 54.09	0	1018295..1018795	-	166	189024200	-	BAbS19_I09790	-	hypothetical protein
933	 52.28	-1	1019191..1019607	+	138	189024201	-	BAbS19_I09800	-	Zn-finger, prokaryotic DksA/TraR C4 type
934	 60.30	0	1019753..1021009	-	418	189024202	-	BAbS19_I09810	-	Proline-rich extensin
935	 58.69	0	1021376..1024072	+	898	189024203	-	BAbS19_I09820	-	sensory box histidine kinase/response regulator
936	 56.97	0	1024223..1025305	+	360	189024204	-	BAbS19_I09830	-	hypothetical protein BruAb1_1045
937	 55.56	0	1025336..1026658	+	440	189024205	-	BAbS19_I09840	-	Beta-lactamase
938	 51.18	-1	1026639..1027865	-	408	189024206	-	BAbS19_I09850	-	Mechanosensitive (MS) ion channel
939	 57.49	0	1027955..1031737	-	1260	189024207	-	BAbS19_I09860	-	Ribonucleotide reductase large subunit
940	 59.51	0	1032439..1032927	-	162	189024208	-	BAbS19_I09870	-	NUDIX hydrolase
941	 57.17	0	1033154..1033753	-	199	189024209	-	BAbS19_I09880	-	Phosphoribosyltransferase
942	 59.34	0	1034116..1034961	-	281	189024210	-	BAbS19_I09890	-	Universal stress protein (Usp)
943	 57.44	0	1035039..1035797	-	252	189024211	-	BAbS19_I09900	-	Molybdenum cofactor biosynthesis protein
944	 59.00	0	1035958..1036557	+	199	189024212	-	BAbS19_I09910	-	Flavodoxin
945	 50.67	-1	1036535..1036684	-	49	189024213	-	BAbS19_I09920	-	hypothetical protein
946	 53.94	-1	1036862..1038118	+	418	189024214	-	BAbS19_I09930	-	threonine dehydratase
947	 61.97	+1	1038185..1039780	+	531	189024215	-	BAbS19_I09940	-	ATP-dependent RNA helicase, DEAD/DEAH box family
948	 58.11	0	1039951..1040979	+	342	189024216	-	BAbS19_I09950	-	cysteine synthase
949	 55.91	0	1040982..1041725	+	247	189024217	-	BAbS19_I09960	-	Alanyl-transfer RNA synthetase
950	 58.25	0	1041752..1042606	+	284	189024218	-	BAbS19_I09970	-	Thiosulfate sulfurtransferase
951	 55.17	0	1042608..1043129	+	173	189024219	-	BAbS19_I09980	-	GCN5-related N-acetyltransferase
952	 55.33	0	1043316..1044806	-	496	189024220	-	BAbS19_I09990	-	Acetyl-CoA hydrolase/transferase
953	 56.76	0	1046612..1047277	-	221	189024221	-	BAbS19_I10020	-	HlyD family secretion protein
954	 55.84	0	1049986..1050816	-	276	189024222	-	BAbS19_I10070	-	SAM (and some other nucleotide) binding motif
955	 55.28	0	1050925..1051890	-	321	189024223	-	BAbS19_I10080	-	Bile acid:sodium symporter
956	 53.97	-1	1052019..1053026	-	335	189024224	-	BAbS19_I10090	-	NAD-dependent epimerase/dehydratase
957	 53.45	-1	1053171..1053995	+	274	189024225	-	BAbS19_I10100	-	ATP/GTP-binding site motif A (P-loop)
958	 56.37	0	1054004..1054615	-	203	189024226	-	BAbS19_I10110	-	nitrilotriacetate monooxygenase component B
959	 58.12	0	1054658..1055242	-	194	189024227	-	BAbS19_I10120	-	Nitroreductase family
960	 57.67	0	1055462..1056472	+	336	189024228	-	BAbS19_I10130	-	hypothetical protein
961	 56.45	0	1056527..1058503	-	658	189024229	-	BAbS19_I10140	-	threonyl-tRNA synthetase
962	 58.54	0	1058718..1059911	-	397	189024230	-	BAbS19_I10150	-	D-alanyl-D-alanine carboxypeptidase 1, S11 family
963	 59.68	0	1060057..1060428	-	123	189024231	-	BAbS19_I10160	-	Protein of unknown function DUF37
964	 57.37	0	1060430..1060870	-	146	189024232	-	BAbS19_I10170	-	Nitrogen-fixing NifU-like, N-terminal
965	 57.01	0	1061134..1061775	+	213	189024233	-	BAbS19_I10180	-	GTP cyclohydrolase I
57.60	MEAN

3.62	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.