IslandPathversion 1.0

IslandPath Analysis: Brucella abortus S19



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 57.60 STD DEV: 3.62
Brucella abortus S19 chromosome 1, complete sequence - 1..2122487
1967 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
189	 60.95	0	224348..224959	-	203	189023457	-	BAbS19_I02020	-	Thiamine monophosphate synthase
190	 62.65	+1	224956..225726	-	256	189023458	-	BAbS19_I02030	-	FMN/related compound-binding core
191	 59.09	0	225728..225925	-	65	189023459	-	BAbS19_I02040	-	thiamineS protein
192	 63.38	+1	225922..226926	-	334	189023460	-	BAbS19_I02050	-	D-amino acid oxidase family protein
193	 62.67	+1	226926..227801	-	291	189023461	-	BAbS19_I02060	-	Phosphomethylpyrimidine kinase
194	 57.72	0	228230..230341	+	703	189023462	-	BAbS19_I02070	-	PAS-associated C-terminal domain protein
195	 62.11	+1	230440..232719	+	759	189023463	-	BAbS19_I02080	-	copper-translocating P-type ATPase
196	 58.67	0	232699..233148	-	149	189023464	-	BAbS19_I02090	-	Bacterial regulatory protein, MerR family
197	 61.31	+1	233254..234000	-	248	189023465	-	BAbS19_I02100	-	ABC transporter, permease protein
198	 63.58	+1	233997..234935	-	312	189023466	-	BAbS19_I02110	-	ATP/GTP-binding site motif A (P-loop)
199	 62.29	+1	234932..236143	-	403	189023467	-	BAbS19_I02120	-	Binding-protein-dependent transport systems inner membrane component
200	 56.45	0	236165..237094	-	309	189023468	-	BAbS19_I02130	-	Substrate-binding region of ABC-type glycine betaine transport system
201	 45.62	-2	237265..237915	-	216	189023469	-	BAbS19_I02140	-	hypothetical protein
202	 60.82	0	238219..239484	-	421	189023470	-	BAbS19_I02150	-	glutamate dehydrogenase, hypothetical
203	 59.65	0	239811..241064	+	417	189023471	-	BAbS19_I02160	-	Pyridine nucleotide-disulphide oxidoreductase
204	 58.82	0	241083..241388	+	101	189023472	-	BAbS19_I02170	-	Sarcosine oxidase, delta subunit, heterotetrameric
205	 57.48	0	244396..244950	+	184	189023473	-	BAbS19_I02200	-	Sarcosine oxidase, gamma subunit
206	 59.72	0	245003..245851	-	282	189023474	-	BAbS19_I02210	-	Amidohydrolase 2
207	 60.90	0	245923..246702	-	259	189023475	-	BAbS19_I02220	-	Bacterial regulatory protein, MarR family
208	 57.73	0	246860..248179	+	439	189023476	-	BAbS19_I02230	-	Bacterial extracellular solute-binding protein, family 1
209	 58.95	0	248270..249163	+	297	189023477	-	BAbS19_I02240	-	Binding-protein-dependent transport systems inner membrane component
210	 59.82	0	249166..250041	+	291	189023478	-	BAbS19_I02250	-	Binding-protein-dependent transport systems inner membrane component
211	 60.26	0	250049..251140	+	363	189023479	-	BAbS19_I02260	-	ATP/GTP-binding site motif A (P-loop)
212	 59.79	0	251143..252261	+	372	189023480	-	BAbS19_I02270	-	Mandelate racemase/muconate lactonizing enzyme
213	 51.01	-1	252258..252602	+	114	189023481	-	BAbS19_I02280	-	hypothetical protein
214	 60.46	0	252595..253674	+	359	189023482	-	BAbS19_I02290	-	Oxidoreductase, N-terminal
215	 52.38	-1	253671..253775	+	34	189023483	-	BAbS19_I02300	-	hypothetical protein
216	 61.50	+1	253779..254513	+	244	189023484	-	BAbS19_I02310	-	Short-chain dehydrogenase/reductase SDR
217	 58.98	0	254554..255399	+	281	189023485	-	BAbS19_I02320	-	ATP/GTP-binding site motif A (P-loop)
218	 58.53	0	255413..256690	+	425	189023486	-	BAbS19_I02330	-	Mandelate racemase/muconate lactonizing enzyme
219	 55.47	0	258844..260040	+	398	189023487	-	BAbS19_I02340	-	Phage integrase
220	 55.71	0	260551..260769	+	72	189023488	-	BAbS19_I02350	-	hypothetical protein
221	 53.02	-1	260976..261290	+	104	189023489	-	BAbS19_I02360	-	hypothetical protein
222	 59.86	0	261287..262168	+	293	189023490	-	BAbS19_I02370	-	virulence-associated protein E
223	 53.88	-1	263842..264279	+	145	189023491	-	BAbS19_I02400	-	hypothetical protein
224	 53.79	-1	264433..265449	+	338	189023492	-	BAbS19_I02410	-	hypothetical protein
225	 51.41	-1	265584..265760	+	58	189023493	-	BAbS19_I02420	-	hypothetical protein
226	 55.96	0	265757..267877	+	706	189023494	-	BAbS19_I02430	-	Flagellar protein FlgJ
227	 52.94	-1	270109..270414	+	101	189023495	-	BAbS19_I02460	-	hypothetical protein
228	 55.56	0	271513..271719	+	68	189023496	-	BAbS19_I02470	-	hypothetical protein
229	 48.82	-2	272983..273531	+	182	189023497	-	BAbS19_I02480	-	zinc-dependent metallopeptidase
230	 53.66	-1	274938..275183	-	81	189023498	-	BAbS19_I02490	-	hypothetical protein
231	 54.39	0	275279..275506	+	75	189023499	-	BAbS19_I02500	-	hypothetical protein
232	 51.89	-1	275572..275862	+	96	189023500	-	BAbS19_I02510	-	hypothetical protein
233	 56.48	0	275859..276398	+	179	189023501	-	BAbS19_I02520	-	hypothetical protein
234	 52.55	-1	276669..277277	+	202	189023502	-	BAbS19_I02530	-	hypothetical protein
235	 46.98	-2	277977..278804	-	275	189023503	-	BAbS19_I02540	-	hypothetical protein
236	 60.19	0	279784..279999	-	71	189023504	-	BAbS19_I02550	-	zinc-binding protein
237	 60.98	0	280009..280641	-	210	189023505	-	BAbS19_I02560	-	Maf-like protein
238	 52.05	-1	280669..280887	-	72	189023506	-	BAbS19_I02570	-	Translation initiation factor, IF1 type
239	 58.65	0	280999..281472	-	157	189023507	-	BAbS19_I02580	-	Low molecular weight phosphotyrosine protein phosphatase
240	 58.80	0	281479..281961	-	160	189023508	-	BAbS19_I02590	-	hypothetical protein
241	 61.79	+1	281968..283260	-	430	189023509	-	BAbS19_I02600	-	Histidinol dehydrogenase
242	 55.10	0	283335..283775	-	146	189023510	-	BAbS19_I02610	-	hypothetical protein
243	 60.93	0	284046..285335	-	429	189023511	-	BAbS19_I02620	-	UDP-N-acetylglucosamine 1-carboxyvinyltransferase
244	 52.42	-1	285438..285851	+	137	189023512	-	BAbS19_I02630	-	Bacterial inner-membrane translocator
245	 55.63	0	286040..287806	+	588	189023513	-	BAbS19_I02640	-	site-specific recombinase, phage integrase family
246	 55.56	0	288163..288324	+	53	189023514	-	BAbS19_I02650	-	BRO family protein
247	 58.25	0	289123..289740	+	205	189023515	-	BAbS19_I02660	-	Site-specific recombinase
248	 54.66	0	290406..291338	+	310	189023516	-	BAbS19_I02670	-	hypothetical protein
249	 52.56	-1	293384..293773	+	129	189023517	-	BAbS19_I02680	-	hypothetical protein
250	 61.68	+1	294366..295208	+	280	189023518	-	BAbS19_I02690	-	Urease accessory protein UreD
251	 60.40	0	295361..295663	+	100	189023519	-	BAbS19_I02700	-	Urease, gamma subunit
252	 57.84	0	295830..296135	+	101	189023520	-	BAbS19_I02710	-	Urease, beta subunit
253	 60.36	0	296154..297866	+	570	189023521	-	BAbS19_I02720	-	Urease:Amidohydrolase
254	 59.50	0	297882..298397	+	171	189023522	-	BAbS19_I02730	-	UreE urease accessory, N-terminal
255	 63.17	+1	298369..299055	+	228	189023523	-	BAbS19_I02740	-	urease accessory protein UreF
256	 57.26	0	299052..299678	+	208	189023524	-	BAbS19_I02750	-	Urease accessory protein UREG
257	 58.61	0	300034..301659	-	541	189023525	-	BAbS19_I02760	-	sensor histidine kinase
258	 60.68	0	301944..303095	+	383	189023526	-	BAbS19_I02770	-	transporter, putative
259	 60.28	0	303110..306241	+	1043	189023527	-	BAbS19_I02780	-	Acriflavin resistance protein
260	 59.78	0	307885..309132	-	415	189023528	-	BAbS19_I02810	-	Peptidase M20/M25/M40
261	 55.12	0	309351..310034	+	227	189023529	-	BAbS19_I02820	-	Bacterial regulatory protein TetR, HTH motif
262	 60.95	0	310464..311774	-	436	189023530	-	BAbS19_I02830	-	dihydropyrimidine dehydrogenase
263	 61.20	0	311793..313274	-	493	189023531	-	BAbS19_I02840	-	pyridine nucleotide-disulphide oxidoreductase family protein
264	 56.29	0	313462..313914	-	150	189023532	-	BAbS19_I02850	-	hypothetical protein
265	 60.55	0	314065..315714	+	549	189023533	-	BAbS19_I02860	-	Phosphoglucose isomerase (PGI)
266	 58.76	0	315848..316909	+	353	189023534	-	BAbS19_I02870	-	arginine/ornithine transport operon protein aot
267	 60.00	0	316906..317655	+	249	189023535	-	BAbS19_I02880	-	hydrolase, haloacid dehalogenase-like family
268	 58.88	0	317628..318500	-	290	189023536	-	BAbS19_I02890	-	Esterase/lipase/thioesterase
269	 59.34	0	318526..320271	-	581	189023537	-	BAbS19_I02900	-	acyl-CoA synthase
270	 56.19	0	320622..321251	-	209	189023538	-	BAbS19_I02910	-	Bacterial regulatory protein TetR, HTH motif
271	 59.88	0	321424..322617	+	397	189023539	-	BAbS19_I02920	-	Secretion protein HlyD
272	 60.20	0	322614..325769	+	1051	189023540	-	BAbS19_I02930	-	Acriflavin resistance protein
273	 52.98	-1	325880..326047	-	55	189023541	-	BAbS19_I02940	-	hypothetical protein
274	 58.24	0	326477..327319	-	280	189023542	-	BAbS19_I02950	-	Bacterial extracellular solute-binding protein, family 3
275	 58.21	0	327588..329480	+	630	189023543	-	BAbS19_I02960	-	Glycosyl transferase, family 2
276	 56.77	0	329408..330367	-	319	189023544	-	BAbS19_I02970	-	Domain of unknown function DUF344
277	 60.90	0	330500..331816	+	438	189023545	-	BAbS19_I02980	-	sensor histidine kinase, hypothetical
278	 61.33	+1	331946..332488	-	180	189023546	-	BAbS19_I02990	-	Pollen allergen Poa pIX/Phl pVI, C-terminal
279	 55.43	0	332660..332926	-	88	189023547	-	BAbS19_I03000	-	hypothetical protein
280	 59.74	0	333092..334303	+	403	189023548	-	BAbS19_I03010	-	Aminotransferase class-III
281	 57.61	0	334308..335246	+	312	189023549	-	BAbS19_I03020	-	ornithine carbamoyltransferase
282	 58.26	0	335248..336270	+	340	189023550	-	BAbS19_I03030	-	Hsp33 protein
283	 56.74	0	336311..336703	-	130	189023551	-	BAbS19_I03040	-	Protein of unknown function DUF525
284	 59.48	0	337072..338268	-	398	189023552	-	BAbS19_I03050	-	Cys/Met metabolism pyridoxal-phosphate-dependent enzyme
285	 61.08	0	338695..339786	+	363	189023553	-	BAbS19_I03060	-	dCTP deaminase
286	 59.88	0	339877..340893	+	338	189023554	-	BAbS19_I03070	-	Helix-turn-helix, AraC type
287	 53.18	-1	340980..341246	+	88	189023555	-	BAbS19_I03080	-	hypothetical protein
288	 59.83	0	341283..341765	+	160	189023556	-	BAbS19_I03090	-	Allergen V5/Tpx-1 related
57.60	MEAN

3.62	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.