IslandPathversion 1.0

IslandPath Analysis: Brucella abortus S19



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 57.60 STD DEV: 3.62
Brucella abortus S19 chromosome 1, complete sequence - 1..2122487
1967 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1114	 58.54	0	1216122..1216835	-	237	189024382	-	BAbS19_I11710	-	Ribosomal protein L3
1115	 57.28	0	1216865..1217173	-	102	189024383	-	BAbS19_I11720	-	Ribosomal protein S10
1116	 58.84	0	1217234..1218409	-	391	189024384	-	BAbS19_I11730	-	elongation factor Tu
1117	 56.98	0	1218473..1220557	-	694	189024385	-	BAbS19_I11740	-	elongation factor EF-2
1118	 57.32	0	1220588..1221058	-	156	189024386	-	BAbS19_I11750	-	Ribosomal protein S7
1119	 57.26	0	1221125..1221496	-	123	189024387	-	BAbS19_I11760	-	Ribosomal protein S12
1120	 54.01	0	1221976..1222299	+	107	189024388	-	BAbS19_I11770	-	hypothetical protein
1121	 57.93	0	1222406..1226608	-	1400	189024389	-	BAbS19_I11780	-	RNA polymerase, alpha subunit
1122	 57.72	0	1226757..1230890	-	1377	189024390	-	BAbS19_I11790	-	DNA-directed RNA polymerase beta subunit
1123	 59.20	0	1231098..1231472	-	124	189024391	-	BAbS19_I11800	-	Ribosomal protein L7/L12
1124	 58.57	0	1231524..1232042	-	172	189024392	-	BAbS19_I11810	-	50S ribosomal protein L10
1125	 56.98	0	1232433..1233134	-	233	189024393	-	BAbS19_I11820	-	Ribosomal protein L1
1126	 58.04	0	1233139..1233567	-	142	189024394	-	BAbS19_I11830	-	Ribosomal protein L11
1127	 52.27	-1	1233770..1234297	-	175	189024395	-	BAbS19_I11840	-	Bacterial transcription antitermination protein NusG
1128	 53.73	-1	1234321..1234521	-	66	189024396	-	BAbS19_I11850	-	Protein secE/sec61-gamma protein
1129	 58.93	0	1235195..1236370	-	391	189024397	-	BAbS19_I11860	-	elongation factor Tu
1130	 61.09	0	1237001..1237861	+	286	189024398	-	BAbS19_I11870	-	RNA methyltransferase, TrmH family, group 3
1131	 54.63	0	1237922..1238353	-	143	189024399	-	BAbS19_I11880	-	CBS domain protein
1132	 57.61	0	1238524..1239252	-	242	189024400	-	BAbS19_I11890	-	Rhomboid-like protein
1133	 58.57	0	1239644..1240285	+	213	189024401	-	BAbS19_I11900	-	hypothetical protein
1134	 59.41	0	1240529..1241134	+	201	189024402	-	BAbS19_I11910	-	hypothetical protein
1135	 57.58	0	1241213..1241740	-	175	189024403	-	BAbS19_I11920	-	Bacterial transferase hexapeptide repeat
1136	 48.31	-2	1242011..1242217	-	68	189024404	-	BAbS19_I11930	-	hypothetical protein
1137	 57.94	0	1242513..1243337	-	274	189024405	-	BAbS19_I11940	-	CysE, serine acetyltransferase
1138	 50.41	-1	1243353..1243475	+	40	189024406	-	BAbS19_I11950	-	hypothetical protein
1139	 58.24	0	1243512..1244282	-	256	189024407	-	BAbS19_I11960	-	hydrolase, alpha/beta hydrolase fold family
1140	 54.37	0	1244316..1244795	-	159	189024408	-	BAbS19_I11970	-	Protein of unknown function DUF192
1141	 59.79	0	1245169..1245750	-	193	189024409	-	BAbS19_I11980	-	Cold-shock DNA-binding domain protein
1142	 44.20	-2	1245874..1246011	-	45	189024410	-	BAbS19_I11990	-	hypothetical protein
1143	 58.50	0	1246113..1246553	+	146	189024411	-	BAbS19_I12000	-	Glyoxalase/Bleomycin resistance protein/dioxygenase domain protein
1144	 61.57	+1	1247793..1249577	-	594	189024412	-	BAbS19_I12030	-	Phosphoesterase, RecJ-like protein
1145	 53.58	-1	1249627..1250688	-	353	189024413	-	BAbS19_I12040	-	D-alanine--D-alanine ligase/VANA/B/C
1146	 45.39	-2	1250717..1250857	+	46	189024414	-	BAbS19_I12050	-	hypothetical protein
1147	 61.09	0	1250991..1251977	-	328	189024415	-	BAbS19_I12060	-	GlpX protein
1148	 58.86	0	1252370..1253689	-	439	189024416	-	BAbS19_I12070	-	Homoserine dehydrogenase
1149	 58.56	0	1253825..1255045	-	406	189024417	-	BAbS19_I12080	-	Aminotransferase, class-I
1150	 62.36	+1	1255176..1255523	-	115	189024418	-	BAbS19_I12090	-	hypothetical protein
1151	 57.58	0	1256060..1257292	+	410	189024419	-	BAbS19_I12100	-	hypothetical protein
1152	 55.79	0	1257902..1258186	+	94	189024420	-	BAbS19_I12110	-	hypothetical protein
1153	 58.02	0	1258509..1259225	+	238	189024421	-	BAbS19_I12120	-	Sugar fermentation stimulation protein
1154	 57.37	0	1259225..1260052	+	275	189024422	-	BAbS19_I12130	-	Metallopeptidase family M24
1155	 60.40	0	1260108..1260857	+	249	189024423	-	BAbS19_I12140	-	DNA repair protein RadC
1156	 58.22	0	1261059..1261697	+	212	189024424	-	BAbS19_I12150	-	hypothetical protein
1157	 61.28	+1	1261986..1263191	-	401	189024425	-	BAbS19_I12160	-	CobL, precorrin-6Y C5,15-methyltransferase
1158	 58.95	0	1263265..1264560	+	431	189024426	-	BAbS19_I12170	-	nitrite reductase family protein
1159	 62.04	+1	1264570..1265196	+	208	189024427	-	BAbS19_I12180	-	Precorrin-8X methylmutase CbiC/CobH
1160	 58.78	0	1265196..1265930	+	244	189024428	-	BAbS19_I12190	-	precorrin-2 methyltransferase
1161	 60.65	0	1265927..1267621	+	564	189024429	-	BAbS19_I12200	-	Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase
1162	 61.97	+1	1267677..1268144	-	155	189024430	-	BAbS19_I12210	-	hypothetical protein
1163	 51.85	-1	1268269..1268511	-	80	189024431	-	BAbS19_I12220	-	phospholipase/carboxylesterase family protein
1164	 55.99	0	1268557..1269165	-	202	189024432	-	BAbS19_I12230	-	phospholipase/carboxylesterase family protein
1165	 58.84	0	1269735..1270922	+	395	189024433	-	BAbS19_I12260	-	Leu/Ile/Val-binding protein family
1166	 59.24	0	1270908..1271903	-	331	189024434	-	BAbS19_I12270	-	Cobalamin biosynthesis protein CbiB
1167	 60.66	0	1271928..1272926	-	332	189024435	-	BAbS19_I12280	-	Aminotransferase, class-I
1168	 60.49	0	1272923..1274233	-	436	189024436	-	BAbS19_I12290	-	cobyrinic acid a,c-diamide synthase
1169	 61.89	+1	1274230..1275108	-	292	189024437	-	BAbS19_I12300	-	Uroporphyrin-III C-methyltransferase
1170	 60.07	0	1275169..1276275	+	368	189024438	-	BAbS19_I12310	-	Cobalamin (vitamin B12) biosynthesis CbiD protein
1171	 61.31	+1	1276262..1277008	+	248	189024439	-	BAbS19_I12320	-	Precorrin-6x reductase CbiJ/CobK
1172	 58.23	0	1276997..1277755	-	252	189024440	-	BAbS19_I12330	-	CobM, precorrin-4 C11-methyltransferase
1173	 58.59	0	1277815..1278210	-	131	189024441	-	BAbS19_I12340	-	Antifreeze protein, type I
1174	 54.81	0	1278203..1278649	-	148	189024442	-	BAbS19_I12350	-	hypothetical protein
1175	 59.41	0	1278809..1279594	+	261	189024443	-	BAbS19_I12360	-	Protein of unknown function DUF81
1176	 59.82	0	1279591..1279926	-	111	189024444	-	BAbS19_I12370	-	hypothetical protein
1177	 56.03	0	1279929..1280567	-	212	189024445	-	BAbS19_I12380	-	cob(I)yrinic acid a,c-diamide adenosyltransferase
1178	 62.39	+1	1280560..1284351	-	1263	189024446	-	BAbS19_I12390	-	CobN/magnesium chelatase
1179	 57.43	0	1284351..1285400	-	349	189024447	-	BAbS19_I12400	-	Dynamin
1180	 60.15	0	1285404..1285925	-	173	189024448	-	BAbS19_I12410	-	ATP/GTP-binding site motif A (P-loop)
1181	 60.96	0	1285931..1286578	-	215	189024449	-	BAbS19_I12420	-	hypothetical protein
1182	 57.14	0	1286737..1286925	-	62	189024450	-	BAbS19_I12430	-	hypothetical protein
1183	 60.67	0	1287239..1288690	-	483	189024451	-	BAbS19_I12440	-	Cobyrinic acid a,c-diamide synthase
1184	 57.69	0	1288966..1290123	+	385	189024452	-	BAbS19_I12450	-	Acyl-COA dehydrogenase, short-chain specific
1185	 60.61	0	1290155..1291045	+	296	189024453	-	BAbS19_I12460	-	MmsB, 3-hydroxyisobutyrate dehydrogenase
1186	 45.83	-2	1291281..1291448	-	55	189024454	-	BAbS19_I12470	-	hypothetical protein
1187	 58.78	0	1291755..1292705	-	316	189024455	-	BAbS19_I12480	-	Transcriptional regulatory protein, LYSR family
1188	 57.16	0	1292995..1294119	+	374	189024456	-	BAbS19_I12490	-	Transcriptional regulator, ARAC family
1189	 55.33	0	1297032..1297322	-	96	189024457	-	BAbS19_I12520	-	hypothetical protein
1190	 57.35	0	1297429..1300005	-	858	189024458	-	BAbS19_I12530	-	Mechanosensitive (MS) ion channel
1191	 59.62	0	1300195..1300662	+	155	189024459	-	BAbS19_I12540	-	hypothetical protein
1192	 59.34	0	1300771..1303308	+	845	189024460	-	BAbS19_I12550	-	protein-export membrane protein, SecD/SecF family
1193	 59.46	0	1303386..1305245	+	619	189024461	-	BAbS19_I12560	-	potassium efflux system family protein
1194	 55.35	0	1305245..1306216	+	323	189024462	-	BAbS19_I12570	-	low PH-induced protein A
1195	 56.32	0	1307094..1307924	-	276	189024463	-	BAbS19_I12600	-	Binding-protein-dependent transport systems inner membrane component
1196	 59.02	0	1307911..1308747	-	278	189024464	-	BAbS19_I12610	-	Binding-protein-dependent transport systems inner membrane component
1197	 55.52	0	1308904..1309908	-	334	189024465	-	BAbS19_I12620	-	sulfate ABC transporter, sulfate-binding protein, putative
1198	 51.97	-1	1310189..1310467	+	92	189024466	-	BAbS19_I12630	-	Prokaryotic diacylglycerol kinase
1199	 58.95	0	1310539..1312107	-	522	189024467	-	BAbS19_I12640	-	CBS domain protein
1200	 58.16	0	1312490..1313230	-	246	189024468	-	BAbS19_I12650	-	Putative membrane-associated alkaline phosphatase
1201	 53.52	-1	1314086..1314625	+	179	189024469	-	BAbS19_I12660	-	Calcium-binding EF-hand
1202	 54.37	0	1314759..1315181	-	140	189024470	-	BAbS19_I12670	-	RbsD or FucU transport
1203	 59.26	0	1315275..1316084	-	269	189024471	-	BAbS19_I12680	-	Short-chain dehydrogenase/reductase SDR
1204	 58.46	0	1316099..1316878	-	259	189024472	-	BAbS19_I12690	-	ATP/GTP-binding site motif A (P-loop)
1205	 59.68	0	1318305..1319234	-	309	189024473	-	BAbS19_I12720	-	Periplasmic binding protein/LacI transcriptional regulator
1206	 57.44	0	1319613..1320728	+	371	189024474	-	BAbS19_I12730	-	Oxidoreductase, N-terminal
1207	 62.16	+1	1320725..1321501	-	258	189024475	-	BAbS19_I12740	-	ATP/GTP-binding site motif A (P-loop)
1208	 62.08	+1	1321498..1322499	-	333	189024476	-	BAbS19_I12750	-	Metal chelate transport system permease protein
1209	 60.48	0	1322492..1323331	-	279	189024477	-	BAbS19_I12760	-	Periplasmic binding protein
1210	 56.58	0	1323345..1325207	-	620	189024478	-	BAbS19_I12770	-	TonB-dependent receptor protein
1211	 57.42	0	1325689..1326813	-	374	189024479	-	BAbS19_I12780	-	ABC transporter, family 2
1212	 56.05	0	1326815..1327615	-	266	189024480	-	BAbS19_I12790	-	ABC transporter ATP-binding protein
1213	 58.90	0	1327590..1329584	-	664	189024481	-	BAbS19_I12800	-	ABC transporter, ATP binding/permease protein
57.60	MEAN

3.62	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.