IslandPathversion 1.0

IslandPath Analysis: Brucella abortus bv. 1 str. 9-941



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 57.17 STD DEV: 4.21
Brucella abortus biovar 1 str. 9-941 chromosome II, complete sequence - 1..1162204
1055 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
938	 55.46	0	1012146..1012877	+	243	62317899	-	BruAb2_1014	-	GntR family transcriptional regulator
939	 45.74	-2	1012874..1013002	+	42	62317900	-	BruAb2_1015	-	hypothetical protein
940	 60.08	0	1013073..1014515	-	480	62317901	-	BruAb2_1016	-	aldehyde dehydrogenase family protein
941	 58.75	0	1014527..1015789	-	420	62317902	-	BruAb2_1017	-	CAIB/BAIF family protein
942	 61.00	0	1015845..1016849	-	334	62317903	-	BruAb2_1018	-	peptide ABC transporter, ATP-binding protein
943	 59.73	0	1016842..1017879	-	345	62317904	-	BruAb2_1019	-	peptide ABC transporter, ATP-binding protein
944	 59.82	0	1017892..1018548	-	218	62317905	-	BruAb2_1020	-	peptide ABC transporter, permease protein
945	 57.50	0	1018560..1019573	-	337	62317906	-	BruAb2_1021	-	peptide ABC transporter, permease protein
946	 58.74	0	1019749..1020555	+	268	62317907	-	BruAb2_1022	-	IclR family transcriptional regulator
947	 59.75	0	1020615..1021901	+	428	62317908	-	BruAb2_1023	-	branched-chain alpha-keto acid dehydrogenase subunit E2
948	 53.02	0	1021985..1023604	-	539	62317909	-	BruAb2_1024	-	ABC transporter periplasmic substrate-binding protein
949	 58.74	0	1023634..1025589	-	651	62317910	-	BruAb2_1025	-	dehydrogenase complex, E1 component, dehydrogenase
950	 57.00	0	1025824..1027344	-	506	62317911	-	BruAb2_1026	-	3-hydroxybutyryl-CoA dehydrogenase
951	 57.22	0	1027346..1028128	-	260	62317912	-	BruAb2_1027	-	enoyl-CoA hydratase
952	 54.42	0	1028311..1029453	+	380	62317913	-	BruAb2_1028	-	acyl-CoA dehydrogenase
953	 61.46	+1	1029778..1032063	+	761	62317914	-	BruAb2_1029	-	penicillin amidase family protein
954	 58.73	0	1033786..1034730	+	314	62317915	-	BruAb2_1031	-	peptide ABC transporter permease
955	 62.18	+1	1034723..1035613	+	296	62317916	-	BruAb2_1032	-	peptide ABC transporter permease
956	 60.36	0	1035616..1036614	+	332	62317917	-	BruAb2_1033	-	peptide ABC transporter ATP-binding protein
957	 58.61	0	1036611..1037615	+	334	62317918	-	BruAb2_1034	-	peptide ABC transporter ATP-binding protein
958	 55.04	0	1037839..1038552	+	237	62317919	-	BruAb2_1035	-	transcriptional regulator
959	 54.40	0	1038618..1040174	+	518	62317920	-	BruAb2_1036	-	oligopeptide ABC transporter periplasmic oligopeptide-binding protein
960	 55.79	0	1040210..1041220	+	336	62317921	-	BruAb2_1037	-	peptide ABC transporter, permease protein
961	 56.71	0	1041217..1042050	+	277	62317922	-	BruAb2_1038	-	peptide ABC transporter permease
962	 56.80	0	1042050..1043042	+	330	62317923	-	BruAb2_1039	-	ABC transporter ATPase D
963	 54.91	0	1043039..1044016	+	325	62317924	-	BruAb2_1040	-	oligopeptide ABC transporter, ATP-binding protein
964	 57.39	0	1044016..1044888	+	290	62317925	-	BruAb2_1041	-	gluconolactonase
965	 58.49	0	1044903..1046321	+	472	62317926	-	BruAb2_1042	-	amidase
966	 56.38	0	1046367..1047416	-	349	62317927	-	BruAb2_1043	-	ABC transporter extracellular solute binding protein
967	 58.08	0	1047442..1048245	-	267	62317928	-	BruAb2_1044	-	polyamine ABC transporter, permease protein
968	 55.15	0	1048242..1049057	-	271	62317929	-	BruAb2_1045	-	polyamine ABC transporter permease
969	 59.98	0	1049113..1050189	-	358	62317930	-	BruAb2_1046	-	ABC transporter
970	 62.44	+1	1050518..1051723	+	401	62317931	-	BruAb2_1047	-	glutamate-1-semialdehyde 2,1-aminomutase
971	 58.03	0	1051873..1053528	+	551	62317932	-	BruAb2_1048	-	hypothetical protein
972	 59.39	0	1053748..1054407	+	219	62317933	-	BruAb2_1049	-	L-fuculose phosphate aldolase
973	 50.77	-1	1055751..1056140	+	129	62317934	-	BruAb2_1051	-	putative cytoplasmic protein
974	 55.44	0	1056149..1056433	-	94	62317935	-	BruAb2_1052	-	pemK family protein
975	 48.23	-2	1057800..1058081	+	93	62317936	-	BruAb2_1054	-	IS3 family transposase orfA
976	 49.51	-1	1058039..1058959	+	306	62317937	-	BruAb2_1055	-	IS3 family transposase orfB
977	 58.71	0	1065451..1066317	+	288	62317938	-	BruAb2_1056	-	hypothetical protein
978	 56.94	0	1066597..1067028	+	143	62317939	-	BruAb2_1057	-	RfF2 family protein
979	 56.19	0	1067089..1068291	-	400	62317940	-	BruAb2_1058	-	cobalamin synthesis protein/P47K family protein
980	 54.73	0	1068458..1069462	-	334	62317941	znuA	BruAb2_1059	-	ZnuA, zinc ABC transporter, periplasmic zinc-bnding protein
981	 60.98	0	1069689..1070585	+	298	62317942	znuC	BruAb2_1060	-	ZnuC, zinc ABC transporter, ATP binding protein
982	 57.49	0	1070539..1071399	+	286	62317943	znuB	BruAb2_1061	-	ZnuB, zinc ABC transporter, permease protein
983	 58.45	0	1071396..1071833	+	145	62317944	-	BruAb2_1062	-	FUR family transcriptional regulator
984	 55.91	0	1072017..1072295	+	92	62317945	-	BruAb2_1063	-	hypothetical protein
985	 54.17	0	1072283..1072810	-	175	62317946	-	BruAb2_1064	-	hypothetical protein
986	 57.44	0	1072807..1073283	-	158	62317947	-	BruAb2_1065	-	hypothetical protein
987	 59.05	0	1073424..1074014	-	196	62317948	-	BruAb2_1066	-	hypothetical protein
988	 57.60	0	1074082..1074489	-	135	62317949	-	BruAb2_1067	-	hypothetical protein
989	 55.60	0	1074497..1075264	-	255	62317950	fliR	BruAb2_1068	-	flagellar biosynthesis protein FliR
990	 55.81	0	1077520..1077786	-	88	62317951	fliQ	BruAb2_1070	-	flagellar biosynthesis protein FliQ
991	 56.04	0	1077798..1078211	-	137	62317952	flgD	BruAb2_1071	-	flagellar basal body rod modification protein
992	 57.95	0	1078208..1078666	-	152	62317953	flbT	BruAb2_1072	-	flagellar biosynthesis repressor FlbT
993	 54.20	0	1078668..1079012	-	114	62317954	flaF	BruAb2_1073	-	flagellar biosynthesis regulatory protein FlaF
994	 56.35	0	1079144..1080190	-	348	62317955	flgL	BruAb2_1074	-	flagellar hook-associated protein FlgL
995	 58.01	0	1080196..1081650	-	484	62317956	flgK	BruAb2_1075	-	flagellar hook-associated protein FlgK
996	 57.60	0	1081775..1082965	-	396	62317957	flgE	BruAb2_1076	-	flagellar hook protein FlgE
997	 53.95	0	1083376..1084059	-	227	62317958	-	BruAb2_1077	-	transcriptional regulator
998	 57.77	0	1084387..1084959	-	190	62317959	-	BruAb2_1078	-	hypothetical protein
999	 61.44	+1	1084913..1086175	-	420	62317960	-	BruAb2_1079	-	MotD-related protein
1000	 60.09	0	1086184..1087476	-	430	62317961	-	BruAb2_1080	-	chemotaxis protein
1001	 60.22	0	1087473..1088573	-	366	62317962	motB	BruAb2_1081	-	flagellar motor protein MotB
1002	 59.62	0	1088570..1089250	-	226	62317963	-	BruAb2_1082	-	hypothetical protein
1003	 59.61	0	1089253..1090995	-	580	62317964	fliF	BruAb2_1083	-	flagellar MS-ring protein
1004	 54.65	0	1091209..1092057	-	282	62317965	-	BruAb2_1084	-	flagellin family protein
1005	 57.22	0	1092695..1102963	+	3422	62317966	-	BruAb2_1085	-	outer membrane autotransporter
1006	 55.97	0	1103080..1104135	-	351	62317967	-	BruAb2_1086	-	hypothetical protein
1007	 54.80	0	1104709..1105728	+	339	62317968	xylF	BruAb2_1087	-	XylF, D-xylose ABC transporter, periplasmic D-xylose-binding protein
1008	 53.52	0	1105890..1107425	+	511	62317969	xylG	BruAb2_1088	-	xylose transporter ATP-binding subunit
1009	 55.90	0	1107568..1108737	+	389	62317970	xylH	BruAb2_1089	-	XylH, D-xylose ABC transporter, permease protein
1010	 45.10	-2	1108781..1108984	+	67	62317971	-	BruAb2_1090	-	hypothetical protein
1011	 56.45	0	1109295..1110263	+	322	62317972	-	BruAb2_1091	-	AraC family transcriptional regulator
1012	 61.48	+1	1110363..1111769	+	468	62317973	-	BruAb2_1092	-	aldehyde dehydrogenase family protein
1013	 61.23	0	1111926..1112735	-	269	62317974	-	BruAb2_1093	-	2,4-dihydroxyhept-2-ene-1, 7-dioic acid aldolase
1014	 59.45	0	1112953..1113756	-	267	62317975	hpaH	BruAb2_1094	-	HpaH, 2-keto-4-pentenoate hydratase
1015	 58.94	0	1113760..1114626	-	288	62317976	-	BruAb2_1095	-	fumarylacetoacetate hydrolase family protein
1016	 59.23	0	1114695..1115675	-	326	62317977	-	BruAb2_1096	-	homoprotocatechuate 2,3-dioxygenase
1017	 59.87	0	1115730..1117244	-	504	62317978	-	BruAb2_1097	-	5-carboxy-2-hydroxymuconate semialdehyde dehydrogenase
1018	 58.78	0	1117314..1117706	-	130	62317979	hpcD	BruAb2_1098	-	HpcD, 5-carboxymethyl-2-hydroxymuconate delta isomerase
1019	 60.16	0	1117872..1118363	+	163	62317980	-	BruAb2_1099	-	MarR family transcriptional regulator
1020	 61.08	0	1118353..1119372	-	339	62317981	-	BruAb2_1100	-	hypothetical protein
1021	 59.97	0	1120634..1121992	-	452	62317982	-	BruAb2_1102	-	hypothetical protein
1022	 59.53	0	1122005..1122649	-	214	62317983	-	BruAb2_1103	-	HAD superfamily hydrolase
1023	 60.54	0	1122646..1123902	-	418	62317984	-	BruAb2_1104	-	hypothetical protein
1024	 60.92	0	1123902..1124684	-	260	62317985	-	BruAb2_1105	-	IclR family transcriptional regulator
1025	 60.71	0	1124934..1126427	+	497	62317986	-	BruAb2_1106	-	amino acid permease family protein
1026	 60.92	0	1126499..1127977	+	492	62317987	-	BruAb2_1107	-	aldehyde dehydrogenase family protein
1027	 61.02	0	1128136..1129818	+	560	62317988	-	BruAb2_1108	-	hypothetical protein
1028	 60.24	0	1129885..1131066	+	393	62317989	-	BruAb2_1109	-	branched-chain amino acid ABC transporter periplasmic substrate-binding protein
1029	 63.79	+1	1131139..1132008	+	289	62317990	-	BruAb2_1110	-	branched-chain amino acid ABC transporter, permease protein
1030	 61.59	+1	1131995..1133707	+	570	62317991	-	BruAb2_1111	-	branched-chain amino acid ABC transporter, ATP-binding/permease protein
1031	 62.55	+1	1133704..1134408	+	234	62317992	-	BruAb2_1112	-	branched-chain amino acid ABC transporter, ATP-binding protein
1032	 52.78	-1	1134503..1134826	-	107	62317993	-	BruAb2_1113	-	hypothetical protein
1033	 57.13	0	1134841..1135710	-	289	62317994	-	BruAb2_1114	-	hypothetical protein
1034	 54.01	0	1135716..1136450	-	244	62317995	-	BruAb2_1115	-	GntR family transcriptional regulator
1035	 56.47	0	1136595..1137575	-	326	62317996	-	BruAb2_1116	-	sugar ABC transporter periplasmic sugar-binding protein
1036	 57.66	0	1138443..1139375	-	310	62317997	-	BruAb2_1118	-	sugar ABC transporter permease
1037	 61.92	+1	1139368..1140546	-	392	62317998	-	BruAb2_1119	-	sugar ABC transporter ATP-binding protein
57.17	MEAN

4.21	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.