IslandPathversion 1.0

IslandPath Analysis: Brucella abortus bv. 1 str. 9-941



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 57.12 STD DEV: 4.21
Brucella abortus biovar 1 str. 9-941 chromosome I, complete sequence - 1..2124241
2030 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
796	 60.57	0	839189..839860	-	223	62289787	purQ	BruAb1_0853	-	phosphoribosylformylglycinamidine synthase subunit I
797	 58.85	0	839883..840125	-	80	62289788	-	BruAb1_0854	-	phosphoribosylformylglycinamidine synthase subunit PurS
798	 55.95	0	840241..841005	-	254	62289789	purC	BruAb1_0855	-	phosphoribosylaminoimidazole-succinocarboxamide synthase
799	 56.17	0	841261..841584	+	107	62289790	-	BruAb1_0856	-	hypothetical protein
800	 57.94	0	841649..842416	+	255	62289791	-	BruAb1_0857	-	hydroxyacid aldolase
801	 58.73	0	842465..843031	-	188	62289792	-	BruAb1_0858	-	hypothetical protein
802	 52.94	0	843041..843142	-	33	62289793	-	BruAb1_0859	-	hypothetical protein
803	 60.48	0	843384..844175	+	263	62289794	-	BruAb1_0860	-	glyoxalase family protein
804	 59.45	0	844401..845702	-	433	62289795	purB	BruAb1_0861	-	adenylosuccinate lyase
805	 60.62	0	845729..846406	-	225	62289796	rpe	BruAb1_0862	-	Rpe, ribulose-phosphate 3-epimerase
806	 57.50	0	846564..847490	-	308	62289797	-	BruAb1_0863	-	lipid A biosynthesis lauroyl acyltransferase
807	 61.42	+1	847504..848532	-	342	62289798	-	BruAb1_0864	-	alcohol dehydrogenase, zinc-containing
808	 60.64	0	848614..849891	-	425	62289799	-	BruAb1_0865	-	3-oxoacyl-(acyl carrier protein) synthase II
809	 60.83	0	849893..851074	-	393	62289800	-	BruAb1_0866	-	3-oxoacyl-(acyl carrier protein) synthase II
810	 51.06	-1	851222..851503	-	93	62289801	-	BruAb1_0867	-	acyl carrier protein
811	 60.24	0	851704..852465	-	253	62289802	-	BruAb1_0868	-	hypothetical protein
812	 57.09	0	852681..853703	+	340	62289803	galM	BruAb1_0869	-	GalM, aldose 1-epimerase
813	 59.85	0	853678..854616	-	312	62289804	-	BruAb1_0870	-	2-dehydro-3-deoxygluconokinase
814	 58.33	0	854805..855536	+	243	62289805	-	BruAb1_0871	-	hypothetical protein
815	 59.04	0	855540..856679	+	379	62289806	phnM	BruAb1_0872	-	PhnM, PhnM protein
816	 58.48	0	856676..857359	-	227	62289807	-	BruAb1_0873	-	HAD superfamily hydrolase
817	 55.13	0	857615..858403	+	262	62289808	-	BruAb1_0874	-	amino acid ABC transporter periplasmic-binding protein
818	 59.24	0	858595..859617	+	340	62289809	-	BruAb1_0875	-	tRNA-dihydrouridine synthase A
819	 57.45	0	859614..860318	-	234	62289810	-	BruAb1_0876	-	hypothetical protein
820	 53.33	0	860318..860512	-	64	62289811	-	BruAb1_0877	-	hypothetical protein
821	 62.32	+1	860532..861314	-	260	62289812	cobS	BruAb1_0878	-	cobalamin synthase
822	 61.96	+1	861468..862487	+	339	62289813	cobT	BruAb1_0879	-	nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase
823	 54.58	0	862595..863074	-	159	62289814	-	BruAb1_0880	-	AsnC family transcriptional regulator
824	 58.48	0	863173..863844	-	223	62289815	-	BruAb1_0881	-	hypothetical protein
825	 47.67	-2	864480..864758	+	92	62289816	-	BruAb1_0883	-	hypothetical protein
826	 57.21	0	865130..865933	+	267	62289817	exoR	BruAb1_0884	-	ExoR, exopolysacchride production negative regulator
827	 54.66	0	865992..866774	-	260	62289818	xth-1	BruAb1_0885	-	Xth-1, exodeoxyribonuclease III
828	 57.49	0	866943..867650	+	235	62289819	-	BruAb1_0886	-	hypothetical protein
829	 54.74	0	867730..868056	-	108	62289820	-	BruAb1_0887	-	HesB/YadR/YfhF family protein
830	 58.56	0	868223..869431	+	402	62289821	dgt	BruAb1_0888	-	deoxyguanosinetriphosphate triphosphohydrolase-like protein
831	 56.94	0	869654..871411	+	585	62289822	argS	BruAb1_0889	-	arginyl-tRNA synthetase
832	 59.30	0	871623..874595	+	990	62289823	-	BruAb1_0890	-	hypothetical protein
833	 59.22	0	874796..875815	+	339	62289824	-	BruAb1_0891	-	glycosy hydrolase family protein
834	 60.92	0	875888..876739	+	283	62289825	-	BruAb1_0892	-	hypothetical protein
835	 60.74	0	876732..877457	+	241	62289826	-	BruAb1_0893	-	hypothetical protein
836	 56.16	0	877603..877821	+	72	62289827	tatA	BruAb1_0894	-	twin argininte translocase protein A
837	 56.05	0	877902..878513	+	203	62289828	-	BruAb1_0895	-	sec-independent translocase
838	 57.21	0	878510..879334	+	274	62289829	tatC	BruAb1_0896	-	TatC, Sec-independent protein translocase protein TatC
839	 59.35	0	879411..880694	+	427	62289830	serS	BruAb1_0897	-	seryl-tRNA synthetase
840	 60.81	0	880843..881610	+	255	62289831	surE	BruAb1_0898	-	stationary phase survival protein SurE
841	 58.45	0	881607..882275	+	222	62289832	pcm	BruAb1_0899	-	protein-L-isoaspartate O-methyltransferase
842	 60.67	0	882669..883952	+	427	62289833	-	BruAb1_0900	-	M24/M37 family peptidase
843	 54.90	0	884001..884867	-	288	62289834	-	BruAb1_0901	-	hypothetical protein
844	 54.39	0	885028..885369	+	113	62289835	-	BruAb1_0902	-	preprotein translocase, YajC subunit
845	 56.87	0	885539..887815	+	758	62289836	-	BruAb1_0903	-	SecD/SecF family protein-export membrane protein
846	 60.51	0	887818..888207	+	129	62289837	-	BruAb1_0904	-	hypothetical protein
847	 58.03	0	888213..889046	+	277	62289838	-	BruAb1_0905	-	hypothetical protein
848	 59.74	0	889098..890498	-	466	62289839	-	BruAb1_0906	-	tRNA (uracil-5-)-methyltransferase Gid
849	 59.86	0	890740..890886	-	48	62289840	-	BruAb1_0907	-	hypothetical protein
850	 56.73	0	891160..892296	+	378	62289841	-	BruAb1_0908	-	hypothetical protein
851	 56.14	0	892293..892862	+	189	62289842	-	BruAb1_0909	-	hypothetical protein
852	 56.11	0	893242..894681	+	479	62289843	tig	BruAb1_0910	-	trigger factor
853	 57.22	0	894831..896333	+	500	62289844	gatB	BruAb1_0911	-	aspartyl/glutamyl-tRNA amidotransferase subunit B
854	 53.37	0	896333..896836	+	167	62289845	-	BruAb1_0912	-	acetyltransferase
855	 46.83	-2	897466..897591	+	41	62289846	-	BruAb1_0914	-	hypothetical protein
856	 57.96	0	897600..898070	+	156	62289847	-	BruAb1_0915	-	hypothetical protein
857	 59.19	0	898114..898728	-	204	62289848	aat	BruAb1_0916	-	leucyl/phenylalanyl-tRNA--protein transferase
858	 57.54	0	898734..900092	-	452	62289849	accC	BruAb1_0917	-	acetyl-CoA carboxylase biotin carboxylase subunit
859	 61.15	0	900142..900612	-	156	62289850	accB	BruAb1_0918	-	acetyl-CoA carboxylase biotin carboxyl carrier protein subunit
860	 54.64	0	900614..901087	-	157	62289851	aroQ	BruAb1_0919	-	3-dehydroquinate dehydratase
861	 56.14	0	901331..902128	-	265	62289852	-	BruAb1_0920	-	hypothetical protein
862	 58.47	0	902176..903591	-	471	62289853	-	BruAb1_0921	-	hypothetical protein
863	 59.36	0	903783..904946	+	387	62289854	-	BruAb1_0922	-	aminotransferase, class I
864	 58.83	0	905065..907833	-	922	62289855	-	BruAb1_0923	-	ribonuclease Rne/Rng domain-containing protein
865	 60.22	0	907836..908021	+	61	62289856	-	BruAb1_0924	-	hypothetical protein
866	 56.90	0	908512..909780	+	422	62289857	-	BruAb1_0925	-	N-acetylmuramoyl-L-alanine amidase
867	 58.29	0	910060..912519	+	819	62289858	-	BruAb1_0926	-	penicillin-binding protein 1A
868	 57.76	0	912823..913788	+	321	62289859	-	BruAb1_0927	-	peptide chain release factor 2
869	 58.33	0	914004..914315	+	103	62289860	-	BruAb1_0928	-	transposase
870	 53.79	0	914305..914739	+	144	62289861	-	BruAb1_0929	-	IS711, transposase orfB
871	 52.94	0	914793..914894	-	33	62289862	-	BruAb1_0930	-	hypothetical protein
872	 61.71	+1	914891..915253	-	120	62289863	-	BruAb1_0931	-	hypothetical protein
873	 57.00	0	915424..916251	-	275	62289864	-	BruAb1_0932	-	hypothetical protein
874	 56.13	0	916273..916737	-	154	62289865	bcp	BruAb1_0933	-	Bcp, bacterioferritin comigratory protein
875	 56.60	0	917024..920422	+	1132	62289866	-	BruAb1_0934	-	hypothetical protein
876	 58.37	0	920481..921734	-	417	62289867	tyrS	BruAb1_0935	-	tyrosyl-tRNA synthetase
877	 60.52	0	921850..922971	+	373	62289868	anmK	BruAb1_0936	-	anhydro-N-acetylmuramic acid kinase
878	 55.56	0	922968..923300	-	110	62289869	qacH	BruAb1_0937	-	QacH, quaternary ammonium compound-resistance protein
879	 57.48	0	923412..924086	-	224	62289870	-	BruAb1_0938	-	hypothetical protein
880	 60.14	0	924291..925469	+	392	62289871	-	BruAb1_0939	-	cysteine desulfurase
881	 55.91	0	925650..927173	+	507	62289872	-	BruAb1_0940	-	cysteine desulfurase activator complex subunit SufB
882	 55.95	0	927241..927996	+	251	62289873	-	BruAb1_0941	-	ABC transporter, ATP-binding protein
883	 59.31	0	928010..929287	+	425	62289874	-	BruAb1_0942	-	hypothetical protein
884	 55.58	0	929369..930613	+	414	62289875	-	BruAb1_0943	-	aminotransferase, class V
885	 57.62	0	930610..931029	+	139	62289876	-	BruAb1_0944	-	hypothetical protein
886	 51.65	-1	931063..932034	-	323	62289877	-	BruAb1_0945	-	glycosyl transferase, group 2 family protein
887	 54.51	0	932437..933234	+	265	62289878	ppnK	BruAb1_0946	-	inorganic polyphosphate/ATP-NAD kinase
888	 57.83	0	933562..935010	+	482	62289879	-	BruAb1_0947	-	DEAD-box ATP dependent DNA helicase
889	 57.48	0	935248..935628	-	126	62289880	-	BruAb1_0948	-	HesB/YadR/YfhF family protein
890	 54.84	0	936322..936414	+	30	62289881	-	BruAb1_0950	-	hypothetical protein
891	 59.70	0	936418..936618	+	66	62289882	-	BruAb1_0951	-	heavy metal-binding domain-containing protein
892	 56.05	0	936945..937613	+	222	62289883	-	BruAb1_0953	-	protein-L-isoaspartate O-methyltransferase
893	 59.01	0	937752..939122	+	456	62289884	-	BruAb1_0954	-	outer membrane efflux family protein
894	 58.06	0	939372..940103	+	243	62289885	-	BruAb1_0955	-	hypothetical protein
895	 49.02	-1	940198..940401	+	67	62289886	-	BruAb1_0956	-	hypothetical protein
57.12	MEAN

4.21	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.