IslandPathversion 1.0

IslandPath Analysis: Brucella abortus bv. 1 str. 9-941



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 57.12 STD DEV: 4.21
Brucella abortus biovar 1 str. 9-941 chromosome I, complete sequence - 1..2124241
2030 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
248	 36.69	-2	276014..276490	-	158	62289239	-	BruAb1_0266	-	hypothetical protein
249	 53.66	0	276554..276799	-	81	62289240	-	BruAb1_0267	-	hypothetical protein
250	 54.07	0	276877..277122	+	81	62289241	-	BruAb1_0268	-	hypothetical protein
251	 51.89	-1	277188..277478	+	96	62289242	-	BruAb1_0269	-	hypothetical protein
252	 56.48	0	277475..278014	+	179	62289243	-	BruAb1_0270	-	hypothetical protein
253	 52.55	-1	278285..278893	+	202	62289244	-	BruAb1_0271	-	hypothetical protein
254	 54.05	0	278956..279288	+	110	62289245	-	BruAb1_0272	-	hypothetical protein
255	 55.38	0	279278..279472	+	64	62289246	-	BruAb1_0273	-	hypothetical protein
256	 47.41	-2	279593..280345	-	250	62289247	-	BruAb1_0274	-	hypothetical protein
257	 60.19	0	281400..281615	-	71	62289248	-	BruAb1_0275	-	zinc-binding protein
258	 61.08	0	281625..282251	-	208	62289249	maf	BruAb1_0276	-	Maf-like protein
259	 51.60	-1	282285..282503	-	72	62289250	infA	BruAb1_0277	-	translation initiation factor IF-1
260	 58.65	0	282615..283088	-	157	62289251	-	BruAb1_0278	-	protein phosphatase
261	 58.80	0	283095..283577	-	160	62289252	-	BruAb1_0279	-	hypothetical protein
262	 61.79	+1	283584..284876	-	430	62289253	hisD	BruAb1_0280	-	histidinol dehydrogenase
263	 55.10	0	284951..285391	-	146	62289254	-	BruAb1_0281	-	hypothetical protein
264	 60.93	0	285662..286951	-	429	62289255	murA	BruAb1_0282	-	UDP-N-acetylglucosamine 1-carboxyvinyltransferase
265	 59.44	0	287174..287353	-	59	62289256	-	BruAb1_0283	-	hypothetical protein
266	 55.63	0	287656..289422	+	588	62289257	-	BruAb1_0284	-	phage integrase family site specific recombinase
267	 56.41	0	289953..290147	+	64	62289258	-	BruAb1_0286	-	hypothetical protein
268	 58.25	0	290739..291356	+	205	62289259	-	BruAb1_0287	-	resolvase family site-specific recombinase
269	 57.02	0	293418..293645	-	75	62289260	-	BruAb1_0289	-	hypothetical protein
270	 56.84	0	294258..294542	-	94	62289261	-	BruAb1_0290	-	hypothetical protein
271	 55.94	0	294656..294916	-	86	62289262	-	BruAb1_0291	-	hypothetical protein
272	 52.56	-1	295000..295389	+	129	62289263	-	BruAb1_0292	-	hypothetical protein
273	 61.68	+1	295982..296824	+	280	62289264	ureD-1	BruAb1_0293	-	UreD-1, urease accessory protein UreD
274	 60.40	0	296977..297279	+	100	62289265	ureA	BruAb1_0294	-	urease subunit gamma
275	 57.84	0	297446..297751	+	101	62289266	ureB	BruAb1_0295	-	urease subunit beta
276	 60.36	0	297770..299482	+	570	62289267	ureC	BruAb1_0296	-	urease subunit alpha
277	 59.50	0	299498..300013	+	171	62289268	ureE	BruAb1_0297	-	urease accessory protein UreE
278	 63.17	+1	299985..300671	+	228	62289269	ureF	BruAb1_0298	-	urease accessory protein UreF
279	 57.26	0	300668..301294	+	208	62289270	ureG-1	BruAb1_0299	-	UreG-1, urease accessory protein UreG
280	 58.55	0	301650..303275	-	541	62289271	-	BruAb1_0300	-	sensor histidine kinase
281	 52.12	-1	303369..303533	+	54	62289272	-	BruAb1_0301	-	hypothetical protein
282	 60.68	0	303560..304711	+	383	62289273	-	BruAb1_0302	-	transporter
283	 60.28	0	304726..307857	+	1043	62289274	-	BruAb1_0303	-	AcrB/AcrD/AcrF multidrug efflux protein
284	 55.12	0	310966..311649	+	227	62289275	-	BruAb1_0306	-	TetR family transcriptional regulator
285	 60.95	0	312079..313389	-	436	62289276	-	BruAb1_0308	-	dihydropyrimidine dehydrogenase
286	 61.17	0	313408..314898	-	496	62289277	-	BruAb1_0309	-	putative oxidoreductase
287	 56.29	0	315077..315529	-	150	62289278	-	BruAb1_0310	-	hypothetical protein
288	 60.55	0	315680..317329	+	549	62289279	pgi	BruAb1_0311	-	glucose-6-phosphate isomerase
289	 58.76	0	317463..318524	+	353	62289280	-	BruAb1_0312	-	hypothetical protein
290	 60.11	0	318524..319270	+	248	62289281	-	BruAb1_0313	-	HAD superfamily hydrolase
291	 58.88	0	319243..320115	-	290	62289282	-	BruAb1_0314	-	hypothetical protein
292	 59.16	0	320141..321805	-	554	62289283	fadD	BruAb1_0315	-	acyl-CoA synthetase
293	 56.19	0	322237..322866	-	209	62289284	-	BruAb1_0316	-	TetR family transcriptional regulator
294	 59.88	0	323039..324232	+	397	62289285	-	BruAb1_0317	-	HlyD family secretion protein
295	 60.20	0	324229..327384	+	1051	62289286	-	BruAb1_0318	-	hydrophobe/amphiphile efflux-1 family protein
296	 52.98	0	327495..327662	-	55	62289287	-	BruAb1_0319	-	hypothetical protein
297	 48.23	-2	327883..328023	-	46	62289288	-	BruAb1_0320	-	hypothetical protein
298	 58.24	0	328092..328934	-	280	62289289	-	BruAb1_0321	-	amino acid ABC transporter, periplasmic amino acid-binding protein
299	 58.21	0	329203..331095	+	630	62289290	-	BruAb1_0322	-	glycosyl transferase, group 2 family protein
300	 56.77	0	331023..331982	-	319	62289291	-	BruAb1_0323	-	hypothetical protein
301	 60.90	0	332115..333431	+	438	62289292	-	BruAb1_0324	-	sensor histidine kinase
302	 61.33	0	333561..334103	-	180	62289293	-	BruAb1_0325	-	hypothetical protein
303	 57.65	0	334363..334617	-	84	62289294	-	BruAb1_0326	-	hypothetical protein
304	 59.74	0	334707..335918	+	403	62289295	argD	BruAb1_0327	-	bifunctional N-succinyldiaminopimelate-aminotransferase/acetylornithine transaminase protein
305	 57.61	0	335923..336861	+	312	62289296	argF	BruAb1_0328	-	ornithine carbamoyltransferase
306	 58.26	0	336863..337885	+	340	62289297	hslO	BruAb1_0329	-	Hsp33-like chaperonin
307	 56.74	0	337926..338318	-	130	62289298	apaG	BruAb1_0330	-	ApaG
308	 59.48	0	338687..339883	-	398	62289299	metZ	BruAb1_0331	-	O-succinylhomoserine sulfhydrylase
309	 61.08	0	340310..341401	+	363	62289300	-	BruAb1_0332	-	2'-deoxycytidine 5'-triphosphate deaminase
310	 59.88	0	341492..342508	+	338	62289301	-	BruAb1_0333	-	AraC family transcriptional regulator
311	 53.18	0	342595..342861	+	88	62289302	-	BruAb1_0334	-	hypothetical protein
312	 60.00	0	342961..343380	+	139	62289303	-	BruAb1_0335	-	hypothetical protein
313	 59.94	0	343555..344922	+	455	62289304	-	BruAb1_0336	-	DNA-damage-inducible protein F
314	 60.37	0	344924..346018	-	364	62289305	pyrD	BruAb1_0337	-	dihydroorotate dehydrogenase 2
315	 58.19	0	346015..346368	-	117	62289306	-	BruAb1_0338	-	hypothetical protein
316	 58.77	0	346622..347077	+	151	62289307	-	BruAb1_0339	-	hypothetical protein
317	 58.99	0	347168..348118	-	316	62289308	pip	BruAb1_0340	-	Pip, proline iminopeptidase
318	 58.57	0	348348..348989	+	213	62289309	-	BruAb1_0341	-	LuxR family DNA-binding response regulator
319	 60.74	0	349026..352550	-	1174	62289310	-	BruAb1_0342	-	sensor histidine kinase/response regulator
320	 52.38	-1	352835..352981	-	48	62289311	-	BruAb1_0343	-	hypothetical protein
321	 52.52	-1	353063..353479	+	138	62289312	mscL	BruAb1_0344	-	MscL, large conductance mechanosensitive channel protein
322	 58.53	0	353555..354832	-	425	62289313	hemA	BruAb1_0345	-	5-aminolevulinate synthase
323	 57.41	0	354978..355679	-	233	62289314	-	BruAb1_0346	-	polysaccharide deacetylase family protein
324	 56.67	0	355688..356407	-	239	62289315	-	BruAb1_0347	-	glycosyl transferase family protein
325	 52.00	-1	356537..357211	-	224	62289316	-	BruAb1_0348	-	hypothetical protein
326	 48.68	-2	357303..357491	-	62	62289317	-	BruAb1_0349	-	hypothetical protein
327	 59.37	0	357579..358469	-	296	62289318	-	BruAb1_0350	-	LysR family transcriptional regulator
328	 61.90	+1	358591..359010	+	139	62289319	-	BruAb1_0351	-	hypothetical protein
329	 62.71	+1	358997..359704	+	235	62289320	-	BruAb1_0352	-	hypothetical protein
330	 58.94	0	360250..361491	+	413	62289321	-	BruAb1_0354	-	lipoprotein
331	 61.00	0	361578..362459	+	293	62289322	panC	BruAb1_0355	-	pantoate--beta-alanine ligase
332	 62.44	+1	362461..363288	+	275	62289323	panB	BruAb1_0356	-	3-methyl-2-oxobutanoate hydroxymethyltransferase
333	 54.83	0	363473..364249	-	258	62289324	fpr	BruAb1_0357	-	Fpr, ferredoxin--NADP reductase
334	 52.69	-1	364371..364463	+	30	62289325	-	BruAb1_0358	-	hypothetical protein
335	 52.14	-1	364652..365002	+	116	62289326	-	BruAb1_0359	-	hypothetical protein
336	 52.73	-1	365041..366138	+	365	62289327	nspC	BruAb1_0360	-	NspC, carboxynorspermidine decarboxylase
337	 55.23	0	366319..367560	+	413	62289328	-	BruAb1_0361	-	hypothetical protein
338	 59.26	0	367576..367791	-	71	62289329	-	BruAb1_0362	-	hypothetical protein
339	 61.22	0	367816..368844	-	342	62289330	-	BruAb1_0363	-	proline racemase
340	 43.52	-2	368899..369006	-	35	62289331	-	BruAb1_0364	-	hypothetical protein
341	 59.39	0	370758..371279	-	173	62289332	-	BruAb1_0366	-	invasion protein B
342	 58.56	0	371575..372894	+	439	62289333	-	BruAb1_0367	-	sensor histidine kinase
343	 55.92	0	372891..373532	+	213	62289334	-	BruAb1_0368	-	LuxR family DNA-binding response regulator
344	 54.24	0	373820..374302	+	160	62289335	-	BruAb1_0369	-	hypothetical protein
345	 59.46	0	374314..375882	+	522	62289336	-	BruAb1_0370	-	TRAP dicarboxylate transporter DctM
346	 58.51	0	375944..377071	+	375	62289337	-	BruAb1_0371	-	extracellular solute-binding protein
347	 59.83	0	377154..377972	-	272	62289338	-	BruAb1_0372	-	hypothetical protein
57.12	MEAN

4.21	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.