IslandPathversion 1.0

IslandPath Analysis: Brucella abortus bv. 1 str. 9-941



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 57.12 STD DEV: 4.21
Brucella abortus biovar 1 str. 9-941 chromosome I, complete sequence - 1..2124241
2030 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1508	 53.51	0	1587411..1588961	-	516	62290499	-	BruAb1_1609	-	hypothetical protein
1509	 50.00	-1	1589082..1589171	+	29	62290500	-	BruAb1_1610	-	hypothetical protein
1510	 47.06	-2	1589262..1589363	-	33	62290501	-	BruAb1_1611	-	hypothetical protein
1511	 49.65	-1	1589514..1589795	+	93	62290502	-	BruAb1_1612	-	hypothetical protein
1512	 56.33	0	1590072..1590719	-	215	62290503	-	BruAb1_1613	-	dihydroxyacetone kinase family protein
1513	 57.48	0	1593027..1593668	-	213	62290504	-	BruAb1_1615	-	hypothetical protein
1514	 55.68	0	1594705..1595478	-	257	62290505	-	BruAb1_1617	-	short chain dehydrogenase
1515	 55.25	0	1595567..1596556	-	329	62290506	-	BruAb1_1618	-	LacI family sugar-binding transcriptional regulator
1516	 57.31	0	1596732..1597736	-	334	62290507	rbsC-2	BruAb1_1619	-	RbsC-2, ribose ABC transporter, permease protein
1517	 55.85	0	1597832..1599310	-	492	62290508	rbsA-2	BruAb1_1620	-	RbsA-2, ribose ABC transporter, ATP-binding protein
1518	 53.62	0	1599472..1599609	+	45	62290509	-	BruAb1_1621	-	hypothetical protein
1519	 53.14	0	1599606..1599923	+	105	62290510	-	BruAb1_1622	-	hypothetical protein
1520	 52.71	-1	1600053..1600181	-	42	62290511	-	BruAb1_1623	-	hypothetical protein
1521	 56.52	0	1600325..1601941	+	538	62290512	-	BruAb1_1624	-	GMC family oxidoreductase
1522	 45.10	-2	1602590..1602742	+	50	62290513	-	BruAb1_1625	-	hypothetical protein
1523	 42.80	-2	1605697..1605939	+	80	62290514	-	BruAb1_1626	-	hypothetical protein
1524	 58.88	0	1608641..1609462	-	273	62290515	-	BruAb1_1627	-	IclR family transcriptional regulator
1525	 58.82	0	1609580..1611031	+	483	62290516	gabD	BruAb1_1628	-	GabD, succinate-semialdehyde dehydrogenase
1526	 58.38	0	1611148..1611738	+	196	62290517	-	BruAb1_1629	-	hypothetical protein
1527	 57.80	0	1611851..1612369	+	172	62290518	-	BruAb1_1630	-	disulfide bond formation protein B
1528	 56.54	0	1612386..1612958	-	190	62290519	-	BruAb1_1631	-	HNH endonuclease family protein
1529	 59.14	0	1612955..1613047	-	30	62290520	-	BruAb1_1632	-	hypothetical protein
1530	 49.07	-1	1613109..1613216	-	35	62290521	-	BruAb1_1633	-	hypothetical protein
1531	 64.70	+1	1613232..1613891	-	219	62290522	-	BruAb1_1634	-	base-excision DNA repair protein
1532	 58.56	0	1613952..1614827	+	291	62290523	-	BruAb1_1635	-	glutamyl-Q tRNA(Asp) synthetase
1533	 58.34	0	1614970..1617156	+	728	62290524	glcB	BruAb1_1636	-	malate synthase G
1534	 57.78	0	1617461..1617955	+	164	62290525	-	BruAb1_1637	-	acetyltransferase
1535	 58.44	0	1618014..1618925	-	303	62290526	-	BruAb1_1638	-	RNA polymerase factor sigma-32
1536	 59.70	0	1619356..1620360	-	334	62290527	-	BruAb1_1639	-	ribosomal large subunit pseudouridine synthase D
1537	 58.28	0	1620416..1620892	+	158	62290528	-	BruAb1_1640	-	hypothetical protein
1538	 53.29	0	1621271..1621696	+	141	62290529	-	BruAb1_1641	-	ferric uptake regulation protein
1539	 56.65	0	1621932..1622939	-	335	62290530	-	BruAb1_1642	-	sensor histidine kinase
1540	 48.48	-2	1623135..1623299	-	54	62290531	-	BruAb1_1643	-	hypothetical protein
1541	 56.23	0	1623449..1624243	-	264	62290532	-	BruAb1_1644	-	two-component response regulator
1542	 60.56	0	1624689..1625261	+	190	62290533	-	BruAb1_1645	-	RNA polymerase sigma factor
1543	 56.96	0	1625462..1626904	+	480	62290534	-	BruAb1_1646	-	sensor histidine kinase
1544	 58.33	0	1626965..1627384	-	139	62290535	-	BruAb1_1647	-	hypothetical protein
1545	 57.63	0	1627405..1627758	-	117	62290536	-	BruAb1_1648	-	hypothetical protein
1546	 57.30	0	1627923..1628765	-	280	62290537	-	BruAb1_1649	-	hypothetical protein
1547	 44.74	-2	1628785..1628898	-	37	62290538	-	BruAb1_1650	-	hypothetical protein
1548	 57.86	0	1628938..1629096	-	52	62290539	-	BruAb1_1651	-	hypothetical protein
1549	 46.30	-2	1629227..1629442	+	71	62290540	-	BruAb1_1652	-	hypothetical protein
1550	 63.64	+1	1629546..1630469	+	307	62290541	exbB	BruAb1_1653	-	ExbB, biopolymer transport protein ExbB
1551	 60.20	0	1630475..1630969	+	164	62290542	-	BruAb1_1654	-	TonB system transport protein ExbD
1552	 61.74	+1	1630966..1631817	+	283	62290543	-	BruAb1_1655	-	TonB-dependent receptor
1553	 55.56	0	1631860..1632606	-	248	62290544	-	BruAb1_1656	-	hypothetical protein
1554	 59.01	0	1634604..1635830	-	408	62290545	-	BruAb1_1658	-	HlyD family secretion protein
1555	 50.00	-1	1635832..1635957	-	41	62290546	-	BruAb1_1659	-	hypothetical protein
1556	 61.18	0	1636065..1636538	-	157	62290547	dut	BruAb1_1660	-	deoxyuridine 5'-triphosphate nucleotidohydrolase
1557	 56.48	0	1636761..1637231	-	156	62290548	-	BruAb1_1661	-	AsnC family transcriptional regulator
1558	 53.24	0	1637377..1637592	+	71	62290549	-	BruAb1_1662	-	hypothetical protein
1559	 60.19	0	1637632..1638495	+	287	62290550	-	BruAb1_1663	-	glutamine amidotransferase
1560	 59.35	0	1638522..1639505	-	327	62290551	-	BruAb1_1664	-	hypothetical protein
1561	 59.75	0	1639622..1641052	+	476	62290552	-	BruAb1_1665	-	major facilitator family transporter
1562	 60.52	0	1641262..1642659	-	465	62290553	-	BruAb1_1666	-	hypothetical protein
1563	 54.05	0	1642857..1642967	-	36	62290554	-	BruAb1_1667	-	hypothetical protein
1564	 60.93	0	1642972..1644261	-	429	62290555	purA	BruAb1_1668	-	adenylosuccinate synthetase
1565	 56.86	0	1644579..1645088	-	169	62290556	-	BruAb1_1669	-	acetyltransferase
1566	 57.37	0	1645093..1646694	-	533	62290557	serA-1	BruAb1_1670	-	D-3-phosphoglycerate dehydrogenase
1567	 50.34	-1	1646706..1646852	-	48	62290558	-	BruAb1_1671	-	hypothetical protein
1568	 58.67	0	1646849..1648024	-	391	62290559	serC	BruAb1_1672	-	phosphoserine aminotransferase
1569	 59.14	0	1648175..1649131	-	318	62290560	-	BruAb1_1673	-	sodium/bile acid transporter family protein
1570	 56.00	0	1649312..1650136	-	274	62290561	-	BruAb1_1674	-	outer surface protein
1571	 58.19	0	1650321..1651676	-	451	62290562	glmM	BruAb1_1675	-	GlmM, phosphoglucosamine mutase
1572	 58.24	0	1651981..1653915	-	644	62290563	ftsH	BruAb1_1676	-	FtsH, cell division protein FtsH
1573	 61.10	0	1654051..1655397	-	448	62290564	-	BruAb1_1677	-	hypothetical protein
1574	 59.85	0	1655413..1656879	-	488	62290565	-	BruAb1_1678	-	hypothetical protein
1575	 52.99	0	1656996..1657112	-	38	62290566	-	BruAb1_1679	-	hypothetical protein
1576	 62.52	+1	1657276..1657782	-	168	62290567	-	BruAb1_1680	-	Pal family lipoprotein
1577	 48.89	-1	1657831..1658010	-	59	62290568	-	BruAb1_1681	-	hypothetical protein
1578	 59.08	0	1658070..1659401	-	443	62290569	tolB	BruAb1_1682	-	translocation protein TolB
1579	 60.22	0	1659457..1660527	-	356	62290570	tolA	BruAb1_1683	-	TolA, tolA protein
1580	 54.97	0	1660535..1660987	-	150	62290571	-	BruAb1_1684	-	ExbD/TolR family TonB system transport protein
1581	 59.07	0	1661034..1661744	-	236	62290572	tolQ	BruAb1_1685	-	TolQ, tolQ protein
1582	 56.44	0	1662119..1662568	-	149	62290573	-	BruAb1_1686	-	hypothetical protein
1583	 61.58	+1	1662565..1663605	-	346	62290574	ruvB	BruAb1_1687	-	Holliday junction DNA helicase B
1584	 61.33	0	1663646..1664263	-	205	62290575	ruvA	BruAb1_1688	-	Holliday junction DNA helicase motor protein
1585	 59.77	0	1664268..1664789	-	173	62290576	ruvC	BruAb1_1689	-	Holliday junction resolvase
1586	 60.95	0	1664891..1665397	-	168	62290577	-	BruAb1_1690	-	hypothetical protein
1587	 58.35	0	1665884..1667086	-	400	62290578	opgC	BruAb1_1691	-	hypothetical protein
1588	 61.71	+1	1667310..1667975	+	221	62290579	-	BruAb1_1692	-	thiamine-phosphate pyrophosphorylase
1589	 61.71	+1	1667976..1669064	+	362	62290580	-	BruAb1_1693	-	hypothetical protein
1590	 50.93	-1	1669073..1669180	+	35	62290581	-	BruAb1_1694	-	hypothetical protein
1591	 56.51	0	1669329..1669889	+	186	62290582	efp	BruAb1_1695	-	elongation factor P
1592	 61.74	+1	1670075..1670866	+	263	62290583	-	BruAb1_1696	-	inositol monophosphatase family protein
1593	 42.34	-2	1670871..1670981	+	36	62290584	-	BruAb1_1697	-	hypothetical protein
1594	 60.86	0	1671121..1672170	+	349	62290585	-	BruAb1_1698	-	hypothetical protein
1595	 59.59	0	1672177..1673208	+	343	62290586	-	BruAb1_1699	-	hypothetical protein
1596	 60.67	0	1673242..1675041	-	599	62290587	-	BruAb1_1700	-	ABC transporter, ATP binding/permease protein
1597	 59.01	0	1675357..1675578	+	73	62290588	rpmE	BruAb1_1701	-	50S ribosomal protein L31
1598	 57.30	0	1675806..1676552	-	248	62290589	-	BruAb1_1702	-	hypothetical protein
1599	 64.07	+1	1676773..1677465	+	230	62290590	-	BruAb1_1703	-	GntR family transcriptional regulator
1600	 62.67	+1	1677627..1678202	+	191	62290591	-	BruAb1_1704	-	BioY family protein
1601	 59.21	0	1678213..1678641	+	142	62290592	-	BruAb1_1705	-	hypothetical protein
1602	 56.32	0	1678654..1679397	-	247	62290593	-	BruAb1_1706	-	hypothetical protein
1603	 58.79	0	1679608..1680432	-	274	62290594	-	BruAb1_1707	-	hypothetical protein
1604	 62.14	+1	1680541..1681137	-	198	62290595	-	BruAb1_1708	-	5-formyltetrahydrofolate cyclo-ligase family protein
1605	 59.02	0	1681525..1681890	-	121	62290596	-	BruAb1_1709	-	hypothetical protein
1606	 60.44	0	1681900..1682172	-	90	62290597	-	BruAb1_1710	-	hypothetical protein
1607	 46.88	-2	1682315..1682410	-	31	62290598	-	BruAb1_1711	-	hypothetical protein
57.12	MEAN

4.21	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.