IslandPathversion 1.0

IslandPath Analysis: Brucella abortus bv. 1 str. 9-941



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 57.12 STD DEV: 4.21
Brucella abortus biovar 1 str. 9-941 chromosome I, complete sequence - 1..2124241
2030 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1121	 58.77	0	1195222..1197879	-	885	62290112	alaS	BruAb1_1206	-	alanyl-tRNA synthetase
1122	 57.00	0	1198272..1199357	-	361	62290113	recA	BruAb1_1207	-	recombinase A
1123	 49.21	-1	1199527..1199652	-	41	62290114	-	BruAb1_1208	-	hypothetical protein
1124	 59.13	0	1199688..1200350	-	220	62290115	-	BruAb1_1209	-	OmpA family protein
1125	 55.90	0	1200437..1201021	-	194	62290116	-	BruAb1_1210	-	lipoprotein
1126	 59.89	0	1201145..1202458	-	437	62290117	-	BruAb1_1211	-	recombination factor protein RarA
1127	 59.16	0	1202605..1204029	-	474	62290118	-	BruAb1_1212	-	serine protease
1128	 58.04	0	1204309..1204737	-	142	62290119	rplQ	BruAb1_1213	-	50S ribosomal protein L17
1129	 57.10	0	1204899..1205912	-	337	62290120	rpoA	BruAb1_1214	-	DNA-directed RNA polymerase subunit alpha
1130	 62.05	+1	1206028..1206417	-	129	62290121	rpsK	BruAb1_1215	-	30S ribosomal protein S11
1131	 56.91	0	1206545..1206913	-	122	62290122	rpsM	BruAb1_1216	-	30S ribosomal protein S13
1132	 58.80	0	1207222..1207806	-	194	62290123	adk	BruAb1_1217	-	adenylate kinase
1133	 55.11	0	1207803..1209143	-	446	62290124	secY	BruAb1_1218	-	preprotein translocase subunit SecY
1134	 59.45	0	1209304..1209774	-	156	62290125	rplO	BruAb1_1219	-	50S ribosomal protein L15
1135	 58.59	0	1209795..1209992	-	65	62290126	rpmD	BruAb1_1220	-	50S ribosomal protein L30
1136	 60.43	0	1210110..1210670	-	186	62290127	rpsE	BruAb1_1221	-	30S ribosomal protein S5
1137	 61.98	+1	1210712..1211074	-	120	62290128	rplR	BruAb1_1222	-	50S ribosomal protein L18
1138	 57.49	0	1211087..1211620	-	177	62290129	rplF	BruAb1_1223	-	50S ribosomal protein L6
1139	 57.89	0	1211659..1212057	-	132	62290130	rpsH	BruAb1_1224	-	30S ribosomal protein S8
1140	 57.84	0	1212068..1212373	-	101	62290131	rpsN	BruAb1_1225	-	30S ribosomal protein S14
1141	 54.66	0	1212401..1212958	-	185	62290132	rplE	BruAb1_1226	-	50S ribosomal protein L5
1142	 57.05	0	1212951..1213262	-	103	62290133	rplX	BruAb1_1227	-	50S ribosomal protein L24
1143	 54.74	0	1213275..1213643	-	122	62290134	rplN	BruAb1_1228	-	50S ribosomal protein L14
1144	 53.50	0	1213712..1213954	-	80	62290135	rpsQ	BruAb1_1229	-	30S ribosomal protein S17
1145	 58.21	0	1213967..1214167	-	66	62290136	rpmC	BruAb1_1230	-	50S ribosomal protein L29
1146	 58.21	0	1214180..1214593	-	137	62290137	rplP	BruAb1_1231	-	50S ribosomal protein L16
1147	 57.38	0	1214632..1215342	-	236	62290138	rpsC	BruAb1_1232	-	30S ribosomal protein S3
1148	 58.72	0	1215342..1215731	-	129	62290139	rplV	BruAb1_1233	-	50S ribosomal protein L22
1149	 54.48	0	1215734..1216012	-	92	62290140	rpsS	BruAb1_1234	-	30S ribosomal protein S19
1150	 59.83	0	1216028..1216861	-	277	62290141	rplB	BruAb1_1235	-	50S ribosomal protein L2
1151	 57.14	0	1216883..1217176	-	97	62290142	rplW	BruAb1_1236	-	50S ribosomal protein L23
1152	 60.55	0	1217173..1217793	-	206	62290143	rplD	BruAb1_1237	-	50S ribosomal protein L4
1153	 58.54	0	1217793..1218506	-	237	62290144	rplC	BruAb1_1238	-	50S ribosomal protein L3
1154	 57.28	0	1218536..1218844	-	102	62290145	rpsJ	BruAb1_1239	-	30S ribosomal protein S10
1155	 58.84	0	1218905..1220080	-	391	62290146	tuf	BruAb1_1240	-	elongation factor Tu
1156	 57.03	0	1220144..1222228	-	694	62290147	fusA	BruAb1_1241	-	elongation factor G
1157	 57.32	0	1222259..1222729	-	156	62290148	rpsG	BruAb1_1242	-	30S ribosomal protein S7
1158	 57.26	0	1222796..1223167	-	123	62290149	rpsL	BruAb1_1243	-	30S ribosomal protein S12
1159	 52.59	-1	1223257..1223391	-	44	62290150	-	BruAb1_1244	-	hypothetical protein
1160	 60.00	0	1223398..1223502	-	34	62290151	-	BruAb1_1245	-	hypothetical protein
1161	 52.15	-1	1223599..1223970	+	123	62290152	-	BruAb1_1246	-	hypothetical protein
1162	 57.93	0	1224077..1228279	-	1400	62290153	rpoC	BruAb1_1247	-	DNA-directed RNA polymerase subunit beta'
1163	 57.72	0	1228428..1232561	-	1377	62290154	rpoB	BruAb1_1248	-	DNA-directed RNA polymerase subunit beta
1164	 59.20	0	1232769..1233143	-	124	62290155	rplL	BruAb1_1249	-	50S ribosomal protein L7/L12
1165	 58.38	0	1233195..1233713	-	172	62290156	rplJ	BruAb1_1250	-	50S ribosomal protein L10
1166	 56.98	0	1234104..1234805	-	233	62290157	rplA	BruAb1_1251	-	50S ribosomal protein L1
1167	 58.04	0	1234810..1235238	-	142	62290158	rplK	BruAb1_1252	-	50S ribosomal protein L11
1168	 52.27	-1	1235441..1235968	-	175	62290159	nusG	BruAb1_1253	-	transcription antitermination protein NusG
1169	 53.33	0	1235992..1236231	-	79	62290160	secE	BruAb1_1254	-	preprotein translocase subunit SecE
1170	 58.93	0	1236866..1238041	-	391	62290161	tuf	BruAb1_1255	-	elongation factor Tu
1171	 54.70	0	1238424..1238540	-	38	62290162	-	BruAb1_1256	-	hypothetical protein
1172	 61.09	0	1238672..1239532	+	286	62290163	-	BruAb1_1257	-	RNA methyltransferase
1173	 54.63	0	1239593..1240024	-	143	62290164	-	BruAb1_1258	-	CBS domain-containing protein
1174	 57.22	0	1240195..1240956	-	253	62290165	-	BruAb1_1259	-	rhomboid family protein
1175	 51.04	-1	1241017..1241112	+	31	62290166	-	BruAb1_1260	-	hypothetical protein
1176	 58.37	0	1241294..1241956	+	220	62290167	-	BruAb1_1261	-	hypothetical protein
1177	 59.41	0	1242200..1242805	+	201	62290168	-	BruAb1_1262	-	hypothetical protein
1178	 57.58	0	1242884..1243411	-	175	62290169	-	BruAb1_1263	-	ferripyochelin-binding protein
1179	 48.63	-2	1243682..1243936	-	84	62290170	-	BruAb1_1264	-	hypothetical protein
1180	 57.76	0	1244184..1245014	-	276	62290171	cysE	BruAb1_1265	-	CysE, serine acetyltransferase
1181	 58.24	0	1245183..1245953	-	256	62290172	-	BruAb1_1266	-	alpha/beta fold family hydrolase
1182	 54.37	0	1245987..1246466	-	159	62290173	-	BruAb1_1267	-	hypothetical protein
1183	 59.79	0	1246840..1247421	-	193	62290174	-	BruAb1_1268	-	cold-shock family protein
1184	 44.44	-2	1247545..1247715	-	56	62290175	-	BruAb1_1269	-	hypothetical protein
1185	 58.50	0	1247784..1248224	+	146	62290176	gloA	BruAb1_1270	-	GloA, lactoylglutathione lyase
1186	 61.57	+1	1249464..1251248	-	594	62290177	recJ	BruAb1_1272	-	RecJ, single-stranded-DNA-specific exonuclease RecJ
1187	 53.58	0	1251298..1252359	-	353	62290178	ddlA	BruAb1_1273	-	DdlA, D-alanine--D-alanine ligase A
1188	 61.09	0	1252662..1253648	-	328	62290179	glpX	BruAb1_1274	-	fructose 1,6-bisphosphatase II
1189	 58.86	0	1254041..1255360	-	439	62290180	hom	BruAb1_1275	-	homoserine dehydrogenase
1190	 58.56	0	1255496..1256716	-	406	62290181	-	BruAb1_1276	-	aminotransferase
1191	 59.95	0	1256847..1257278	-	143	62290182	-	BruAb1_1277	-	hypothetical protein
1192	 57.61	0	1257683..1258963	+	426	62290183	-	BruAb1_1278	-	hypothetical protein
1193	 55.79	0	1259573..1259857	+	94	62290184	-	BruAb1_1279	-	hypothetical protein
1194	 54.39	0	1259991..1260104	+	37	62290185	-	BruAb1_1280	-	hypothetical protein
1195	 44.09	-2	1260079..1260171	+	30	62290186	-	BruAb1_1281	-	hypothetical protein
1196	 58.02	0	1260180..1260896	+	238	62290187	sfsA	BruAb1_1282	-	sugar fermentation stimulation protein A
1197	 57.37	0	1260896..1261723	+	275	62290188	map	BruAb1_1283	-	methionine aminopeptidase
1198	 60.40	0	1261779..1262528	+	249	62290189	radC	BruAb1_1284	-	DNA repair protein RadC
1199	 58.22	0	1262730..1263368	+	212	62290190	-	BruAb1_1285	-	hypothetical protein
1200	 61.28	0	1263657..1264862	-	401	62290191	cobL	BruAb1_1286	-	CobL, precorrin-6Y C5,15-methyltransferase
1201	 59.01	0	1264939..1266231	+	430	62290192	-	BruAb1_1287	-	nitrite reductase family protein
1202	 62.04	+1	1266241..1266867	+	208	62290193	cobH	BruAb1_1288	-	precorrin-8X methylmutase
1203	 58.64	0	1266867..1267601	+	244	62290194	cobI	BruAb1_1289	-	precorrin-2 C(20)-methyltransferase
1204	 60.65	0	1267598..1269292	+	564	62290195	-	BruAb1_1290	-	CbiG, precorrin-3B C17-methyltransferase
1205	 61.97	+1	1269348..1269815	-	155	62290196	-	BruAb1_1291	-	hypothetical protein
1206	 59.98	0	1271502..1272593	+	363	62290197	-	BruAb1_1294	-	branched-chain amino acid ABC transporter periplasmic substrate-binding protein
1207	 59.24	0	1272579..1273574	-	331	62290198	cobD	BruAb1_1295	-	cobalamin biosynthesis protein
1208	 60.66	0	1273599..1274597	-	332	62290199	cobC	BruAb1_1296	-	CobC, cobC protein
1209	 60.49	0	1274594..1275904	-	436	62290200	cobB	BruAb1_1297	-	cobyrinic acid a,c-diamide synthase
1210	 62.07	+1	1275901..1276749	-	282	62290201	cobA	BruAb1_1298	-	CobA, uroporphyrin-III C-methyltransferase
1211	 60.07	0	1276840..1277946	+	368	62290202	cbiD	BruAb1_1299	-	cobalt-precorrin-6A synthase
1212	 61.31	0	1277933..1278679	+	248	62290203	cobK	BruAb1_1300	-	cobalt-precorrin-6x reductase
1213	 58.23	0	1278668..1279426	-	252	62290204	cobM	BruAb1_1301	-	CobM, precorrin-4 C11-methyltransferase
1214	 58.59	0	1279486..1279881	-	131	62290205	-	BruAb1_1302	-	precorrin-3B C17-methyltransferase
1215	 54.81	0	1279874..1280320	-	148	62290206	-	BruAb1_1303	-	hypothetical protein
1216	 59.41	0	1280480..1281265	+	261	62290207	-	BruAb1_1304	-	hypothetical protein
1217	 59.59	0	1281262..1281600	-	112	62290208	-	BruAb1_1305	-	hypothetical protein
1218	 56.03	0	1281600..1282238	-	212	62290209	cobO	BruAb1_1306	-	cob(I)yrinic acid a,c-diamide adenosyltransferase
1219	 62.37	+1	1282231..1286022	-	1263	62290210	cobN	BruAb1_1307	-	cobaltochelatase
1220	 57.43	0	1286022..1287071	-	349	62290211	-	BruAb1_1308	-	cobalamin biosynthesis protein CobW
57.12	MEAN

4.21	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.