IslandPathversion 1.0

IslandPath Analysis: Bacillus subtilis subsp. subtilis str. 168



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 43.31 STD DEV: 4.61
Bacillus subtilis subsp. subtilis str. 168, complete genome - 1..4214630
4105 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1386	 45.60	0	1452999..1454090	+	363	16078450	ykvY	BSU13860	-	hypothetical protein
1387	 44.00	0	1454372..1455337	+	321	16078451	ykvZ	BSU13870	-	hypothetical protein
1388	 37.88	-1	1455400..1456257	+	285	16078452	glcT	BSU13880	-	BglG family transcriptional antiterminator
1389	 45.33	0	1456496..1458595	+	699	16078453	ptsG	BSU13890	-	phosphotransferase system (PTS) glucose-specific enzyme IICBA component
1390	 40.82	0	1458693..1458959	+	88	16078454	ptsH	BSU13900	-	phosphocarrier protein HPr
1391	 43.78	0	1458959..1460671	+	570	50812224	ptsI	BSU13910	-	phosphotransferase system (PTS) enzyme I
1392	 41.67	0	1460762..1461001	+	79	16078456	splA	BSU13920	-	transcriptional regulator
1393	 41.89	0	1461079..1462107	+	342	16078457	splB	BSU13930	-	spore photoproduct (thymine dimer) lyase
1394	 43.30	0	1462280..1462801	-	173	16078458	ykwB	BSU13940	-	hypothetical protein
1395	 41.83	0	1462936..1464900	+	654	16078459	mcpC	BSU13950	-	methyl-accepting chemotaxis protein
1396	 43.83	0	1465037..1465903	+	288	16078460	ykwC	BSU13960	-	hypothetical protein
1397	 40.05	0	1465942..1466715	-	257	16078461	ykwD	BSU13970	-	hypothetical protein
1398	 40.28	0	1467109..1469166	+	685	16078462	ykuA	BSU13980	-	hypothetical protein
1399	 40.53	0	1469330..1471150	+	606	16078463	kinA	BSU13990	-	two-component sensor histidine kinase
1400	 43.26	0	1471161..1472339	-	392	16078464	patA	BSU14000	-	aminotransferase A
1401	 38.93	0	1472906..1473817	+	303	16078465	cheV	BSU14010	-	modulation of CheA activity in response to attractants (chemotaxis)
1402	 40.86	0	1473861..1474325	-	154	16078466	ykyB	BSU14020	-	hypothetical protein
1403	 42.54	0	1474451..1475743	-	430	16078467	ykuC	BSU14030	-	hypothetical protein
1404	 50.10	+1	1475819..1476313	-	164	16078468	ykuD	BSU14040	-	hypothetical protein
1405	 45.49	0	1476370..1477233	-	287	16078469	ykuE	BSU14050	-	hypothetical protein
1406	 50.85	+1	1477376..1478140	+	254	16078470	ykuF	BSU14060	-	short chain dehydrogenase
1407	 35.09	-1	1478441..1480723	+	760	16078471	ykuG	BSU14070	-	hypothetical protein
1408	 30.60	-2	1480853..1481401	+	182	16078472	ykuH	BSU14080	-	hypothetical protein
1409	 41.67	0	1481554..1482777	+	407	16078473	ykuI	BSU14090	-	hypothetical protein
1410	 38.33	-1	1483423..1483662	+	79	16078474	ykuJ	BSU14100	-	hypothetical protein
1411	 43.74	0	1483772..1484290	+	172	16078475	ykuK	BSU14110	-	hypothetical protein
1412	 38.89	0	1484424..1484621	+	65	16078476	ykzF	BSU14120	-	hypothetical protein
1413	 40.77	0	1484759..1485202	+	147	16078477	ykuL	BSU14130	-	hypothetical protein
1414	 41.95	0	1485351..1486232	+	293	16078478	ccpC	BSU14140	-	LysR family transcriptional regulator
1415	 41.72	0	1486344..1486820	+	158	16078479	ykuN	BSU14150	-	flavodoxin
1416	 43.85	0	1486810..1487703	+	297	16078480	ykuO	BSU14160	-	hypothetical protein
1417	 43.20	0	1487719..1488255	+	178	16078481	ykuP	BSU14170	-	hypothetical protein
1418	 44.16	0	1488280..1488990	+	236	16078482	ykuQ	BSU14180	-	hypothetical protein
1419	 44.89	0	1489060..1490184	+	374	16078483	ykuR	BSU14190	-	hypothetical protein
1420	 41.06	0	1490246..1490491	+	81	16078484	ykuS	BSU14200	-	hypothetical protein
1421	 41.67	0	1490528..1491331	-	267	16078485	ykuT	BSU14210	-	hypothetical protein
1422	 44.01	0	1491568..1492110	+	180	16078486	ykuU	BSU14220	-	hypothetical protein
1423	 43.94	0	1492182..1492643	+	153	16078487	ykuV	BSU14230	-	hypothetical protein
1424	 42.36	0	1493094..1493669	+	191	16078488	rok	BSU14240	-	repressor of comK
1425	 38.72	0	1493710..1494675	-	321	16078489	yknT	BSU14250	-	hypothetical protein
1426	 44.83	0	1494812..1495411	+	199	16078490	mobA	BSU14260	-	molybdopterin-guanine dinucleotide biosynthesis protein A
1427	 47.84	0	1495462..1496481	+	339	16078491	moeB	BSU14270	-	thiamine/molybdopterin biosynthesis MoeB-like protein
1428	 49.57	+1	1496499..1497791	+	430	16078492	moeA	BSU14280	-	molybdopterin biosynthesis protein
1429	 47.70	0	1497752..1498273	+	173	16078493	mobB	BSU14290	-	molybdopterin-guanine dinucleotide biosynthesis protein B
1430	 46.20	0	1498273..1498746	+	157	16078494	moaE	BSU14300	-	molybdopterin converting factor (subunit 2)
1431	 41.45	0	1498739..1498972	+	77	16078495	moaD	BSU14310	-	molybdopterin converting factor (subunit 1)
1432	 43.57	0	1499196..1500953	+	585	16078496	yknU	BSU14320	-	hypothetical protein
1433	 45.29	0	1500965..1502779	+	604	16078497	yknV	BSU14330	-	hypothetical protein
1434	 42.96	0	1502889..1503584	+	231	16078498	yknW	BSU14340	-	hypothetical protein
1435	 42.33	0	1503589..1504722	+	377	16078499	yknX	BSU14350	-	hypothetical protein
1436	 48.48	+1	1504723..1505415	+	230	16078500	yknY	BSU14360	-	hypothetical protein
1437	 45.81	0	1505412..1506605	+	397	16078501	yknZ	BSU14370	-	hypothetical protein
1438	 41.53	0	1506885..1507640	+	251	16078502	fruR	BSU14380	-	DeoR family transcriptional regulator
1439	 44.52	0	1507637..1508548	+	303	16078503	fruK	BSU14390	-	fructose-1-phosphate kinase
1440	 46.59	0	1508563..1510470	+	635	16078504	fruA	BSU14400	-	phosphotransferase system (PTS) fructose-specific enzyme IIABC component
1441	 41.92	0	1510615..1511196	+	193	16078505	sipT	BSU14410	-	type I signal peptidase
1442	 37.78	-1	1511230..1511499	-	89	16078506	ykoA	BSU14420	-	hypothetical protein
1443	 43.93	0	1511680..1513302	+	540	16078507	ykpA	BSU14430	-	hypothetical protein
1444	 45.29	0	1513359..1514270	+	303	16078508	ykpB	BSU14440	-	2-dehydropantoate 2-reductase
1445	 42.90	0	1514304..1515536	-	410	16078509	ampS	BSU14450	-	aminopeptidase
1446	 43.70	0	1515646..1515780	-	44	16078510	ykpC	BSU14460	-	hypothetical protein
1447	 46.63	0	1515881..1516888	-	335	16078511	mreBH	BSU14470	-	cell-shape determining protein
1448	 38.35	-1	1517172..1517450	+	92	16078512	abh	BSU14480	-	transcriptional regulator
1449	 39.63	0	1517640..1518926	+	428	16078513	kinC	BSU14490	-	two-component sensor histidine kinase
1450	 42.69	0	1518942..1519775	+	277	16078514	ykqA	BSU14500	-	hypothetical protein
1451	 42.19	0	1519838..1520503	+	221	16078515	ykqB	BSU14510	-	hypothetical protein
1452	 43.43	0	1520658..1522391	+	577	16078516	adeC	BSU14520	-	adenine deaminase
1453	 44.00	0	1522425..1524092	-	555	16078517	ykqC	BSU14530	-	hypothetical protein
1454	 33.81	-2	1524098..1524307	-	69	16078518	ykzG	BSU14540	-	hypothetical protein
1455	 42.76	0	1524693..1525466	+	257	16078519	ykrA	BSU14550	-	hypothetical protein
1456	 43.60	0	1525502..1526056	-	184	16078520	def	BSU14560	-	peptide deformylase
1457	 36.57	-1	1526592..1527209	+	205	16078521	ykyA	BSU14570	-	hypothetical protein
1458	 43.37	0	1527633..1528748	+	371	16078522	pdhA	BSU14580	-	pyruvate dehydrogenase (E1 alpha subunit)
1459	 44.99	0	1528752..1529729	+	325	16078523	pdhB	BSU14590	-	pyruvate dehydrogenase (E1 beta subunit)
1460	 44.32	0	1529844..1531172	+	442	16078524	pdhC	BSU14600	-	branched-chain alpha-keto acid dehydrogenase subunit E2
1461	 44.52	0	1531177..1532589	+	470	16078525	pdhD	BSU14610	-	dihydrolipoamide dehydrogenase
1462	 39.73	0	1532634..1533008	-	124	16078526	slp	BSU14620	-	small peptidoglycan-associated lipoprotein
1463	 43.45	0	1533586..1535058	-	490	16078527	speA	BSU14630	-	arginine decarboxylase
1464	 44.19	0	1535243..1535509	+	88	16078528	yktA	BSU14640	-	hypothetical protein
1465	 43.82	0	1535542..1536180	-	212	16078529	yktB	BSU14650	-	hypothetical protein
1466	 37.57	-1	1536420..1536608	+	62	16078530	ykzI	BSU14660	-	hypothetical protein
1467	 42.98	0	1536748..1537545	+	265	16078531	yktC	BSU14670	-	hypothetical protein
1468	 45.69	0	1537571..1537999	+	142	16078532	ykzC	BSU14680	-	hypothetical protein
1469	 38.47	-1	1538077..1538991	-	304	16078533	yktD	BSU14690	-	hypothetical protein
1470	 44.83	0	1539343..1540908	-	521	16078534	nprE	BSU14700	-	extracellular neutral metalloprotease
1471	 40.65	0	1541193..1543133	+	646	16078535	ylaA	BSU14710	-	hypothetical protein
1472	 34.44	-1	1543123..1543392	+	89	16078536	ylaB	BSU14720	-	hypothetical protein
1473	 41.00	0	1543392..1543913	+	173	16078537	ylaC	BSU14730	-	hypothetical protein
1474	 44.56	0	1543910..1544203	+	97	16078538	ylaD	BSU14740	-	hypothetical protein
1475	 40.85	0	1544243..1544854	-	203	16078539	ylaE	BSU14750	-	hypothetical protein
1476	 40.74	0	1545127..1545315	-	62	16078540	ylaF	BSU14760	-	hypothetical protein
1477	 45.24	0	1545428..1547266	+	612	16078541	ylaG	BSU14770	-	hypothetical protein
1478	 45.28	0	1547323..1547640	+	105	16078542	ylaH	BSU14780	-	hypothetical protein
1479	 40.48	0	1547696..1547905	-	69	16078543	ylaI	BSU14790	-	hypothetical protein
1480	 43.81	0	1547988..1548617	-	209	16078544	ylaJ	BSU14800	-	hypothetical protein
1481	 44.32	0	1548772..1550100	+	442	16078545	ylaK	BSU14810	-	hypothetical protein
1482	 45.88	0	1550104..1550589	-	161	16078546	ylaL	BSU14820	-	hypothetical protein
1483	 43.33	0	1550692..1551621	+	309	16078547	ylaM	BSU14830	-	glutaminase
1484	 41.13	0	1551719..1552000	+	93	16078548	ylaN	BSU14840	-	hypothetical protein
1485	 42.82	0	1552206..1553417	+	403	16078549	ftsW	BSU14850	-	cell-division protein
43.31	MEAN

4.61	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.