IslandPathversion 1.0

IslandPath Analysis: Arcobacter butzleri RM4018



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 26.98 STD DEV: 3.50
Arcobacter butzleri RM4018, complete genome - 1..2341251
2259 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
506	 29.12	0	528768..529787	+	339	157736777	tas	Abu_0524	-	aldo/keto reductase family oxidoreductase TAS
507	 30.31	0	529857..531344	+	495	157736778	pitA	Abu_0525	-	phosphate transporter family protein
508	 26.18	0	531631..534174	+	847	157736779	-	Abu_0526	-	methyl-accepting chemotaxis protein
509	 26.12	0	534237..534638	-	133	157736780	-	Abu_0527	-	hypothetical protein
510	 27.29	0	534781..536682	-	633	157736781	-	Abu_0528	-	methyl-accepting chemotaxis protein
511	 27.82	0	536838..537200	+	120	157736782	-	Abu_0529	-	hypothetical protein
512	 24.20	0	537210..537680	+	156	157736783	-	Abu_0530	-	hypothetical protein
513	 24.98	0	537720..538940	+	406	157736784	-	Abu_0531	-	M48 family peptidase
514	 24.75	0	538937..540136	+	399	157736785	-	Abu_0532	-	DNA recombination protein RmuC-like protein
515	 23.56	0	540149..541048	-	299	157736786	-	Abu_0533	-	integral membrane domain-containing protein
516	 27.44	0	541048..542268	-	406	157736787	moeA2	Abu_0534	-	molybdenum cofactor biosynthesis protein A
517	 23.74	0	542279..542476	-	65	157736788	-	Abu_0535	-	hypothetical protein
518	 28.75	0	542584..543369	+	261	157736789	-	Abu_0536	-	hypothetical protein
519	 25.35	0	543366..543866	+	166	157736790	-	Abu_0537	-	hypothetical protein
520	 31.67	+1	543869..544108	-	79	157736791	-	Abu_0538	-	hypothetical protein
521	 28.92	0	544092..544589	-	165	157736792	-	Abu_0539	-	hypothetical protein
522	 31.95	+1	544832..545629	+	265	157736793	rpsB	Abu_0540	-	30S ribosomal protein S2
523	 31.81	+1	545629..546675	+	348	157736794	tsf	Abu_0541	-	elongation factor Ts
524	 25.99	0	546721..547401	+	226	157736795	-	Abu_0542	-	ABC transporter, ATP-binding protein
525	 24.70	0	547398..548219	+	273	157736796	-	Abu_0543	-	hypothetical protein
526	 26.05	0	548216..548833	+	205	157736797	gmk	Abu_0544	-	guanylate kinase
527	 23.49	0	548834..550459	-	541	157736798	-	Abu_0545	-	EAL/GGDEF domain-containing protein
528	 27.35	0	550556..552994	+	812	157736799	-	Abu_0546	-	cation-transporting ATPase, P-type
529	 28.51	0	553011..553238	+	75	157736800	-	Abu_0547	-	hypothetical protein
530	 36.43	+2	553268..553558	-	96	157736801	-	Abu_0548	-	cytochrome c-553
531	 25.37	0	553758..554360	+	200	157736802	-	Abu_0549	-	oligopeptide ABC transporter, ATP-binding protein
532	 24.62	0	554347..555276	+	309	157736803	hemH	Abu_0550	-	ferrochelatase
533	 26.32	0	555304..557412	-	702	157736804	feoB1	Abu_0551	-	ferrous iron transport protein B
534	 23.68	0	557402..557629	-	75	157736805	-	Abu_0552	-	hypothetical protein
535	 25.57	0	557827..558573	+	248	157736806	-	Abu_0553	-	hypothetical protein
536	 27.26	0	558630..559370	+	246	157736807	-	Abu_0554	-	ABC transporter, ATP-binding protein
537	 28.96	0	559384..560184	+	266	157736808	-	Abu_0555	-	ABC transporter, permease protein
538	 23.64	0	560208..561032	+	274	157736809	-	Abu_0556	-	hypothetical protein
539	 33.15	+1	561113..561652	+	179	157736810	tpx	Abu_0557	-	thiol peroxidase
540	 28.94	0	561764..562492	+	242	157736811	-	Abu_0558	-	hypothetical protein
541	 25.15	0	562512..563489	-	325	157736812	-	Abu_0559	-	efflux protein bile acid:sodium symporter family protein
542	 23.17	-1	563572..564762	+	396	157736813	-	Abu_0560	-	hypothetical protein
543	 28.26	0	565013..565939	+	308	157736814	-	Abu_0561	-	putative sulfite oxidase subunit YedY
544	 21.34	-1	565939..566505	+	188	157736815	-	Abu_0562	-	hypothetical protein
545	 27.66	0	566755..568800	+	681	157736816	rep	Abu_0563	-	ATP-dependent DNA helicase UvrD
546	 25.65	0	568847..570004	+	385	157736817	-	Abu_0564	-	sodium/hydrogen antiporter
547	 33.48	+1	570246..571580	+	444	157736818	soxC	Abu_0565	-	sulfur oxidation protein SoxCD, sulfur dehydrogenase subunit
548	 31.65	+1	571549..572733	+	394	157736819	soxD	Abu_0566	-	sulfur oxidation protein SoxCD, diheme cytochrome c subunit
549	 32.20	+1	572748..573101	+	117	157736820	soxX	Abu_0567	-	sulfur oxidation protein SoxXA, monoheme cytochrome c subunit
550	 33.55	+1	573117..573569	+	150	157736821	soxY	Abu_0568	-	sulfur oxidation protein SoxYZ, sulfur covalently binding protein
551	 30.39	0	573627..573932	+	101	157736822	soxZ	Abu_0569	-	sulfur oxidation protein SoxYZ, sulfur compound chelating protein
552	 29.95	0	573970..574884	+	304	157736823	soxA	Abu_0570	-	sulfur oxidation protein SoxXA, diheme cytochrome c subunit
553	 31.90	+1	574898..575317	+	139	157736824	-	Abu_0571	-	hypothetical protein
554	 30.84	+1	575449..577215	+	588	157736825	soxB	Abu_0572	-	sulfur oxidation protein, sulfate thiol esterase
555	 21.38	-1	577302..578096	+	264	157736826	-	Abu_0573	-	hypothetical protein
556	 26.44	0	578093..578527	+	144	157736827	-	Abu_0574	-	hypothetical protein
557	 27.66	0	578531..578971	+	146	157736828	-	Abu_0575	-	hypothetical protein
558	 28.66	0	578989..579780	+	263	157736829	-	Abu_0576	-	hypothetical protein
559	 31.39	+1	579811..580377	-	188	157736830	pfpI	Abu_0577	-	peptidase, ThiJ/PfpI family protein
560	 26.69	0	580452..581369	-	305	157736831	-	Abu_0578	-	beta-lactamase-like protein
561	 21.37	-1	581459..582511	+	350	157736832	-	Abu_0579	-	hypothetical protein
562	 30.67	+1	582535..583209	-	224	157736833	-	Abu_0580	-	rhodanese-like protein
563	 32.11	+1	583395..586010	+	871	157736834	valS	Abu_0581	-	valyl-tRNA synthetase
564	 22.47	-1	586038..586856	+	272	157736835	-	Abu_0582	-	hypothetical protein
565	 30.26	0	587017..587211	+	64	157736836	-	Abu_0583	-	hypothetical protein
566	 23.27	-1	587249..588103	-	284	157736837	-	Abu_0584	-	hypothetical protein
567	 29.22	0	588110..589423	-	437	157736838	-	Abu_0585	-	major facilitator superfamily transporter
568	 28.33	0	589501..590100	+	199	157736839	-	Abu_0586	-	HAM1-like protein
569	 20.87	-1	590090..590410	-	106	157736840	-	Abu_0587	-	hypothetical protein
570	 18.42	-2	590407..590748	-	113	157736841	-	Abu_0588	-	hypothetical protein
571	 19.79	-2	590738..591025	-	95	157736842	-	Abu_0589	-	hypothetical protein
572	 33.07	+1	591012..591776	-	254	157736843	proC	Abu_0590	-	pyrroline-5-carboxylate reductase
573	 28.49	0	591846..592526	+	226	157736844	-	Abu_0591	-	hypothetical protein
574	 27.71	0	592569..594986	+	805	157736845	lon	Abu_0592	-	ATP-dependent protease La
575	 26.24	0	594990..595553	+	187	157736846	-	Abu_0593	-	rhomboid-like protein
576	 29.19	0	595550..596008	+	152	157736847	-	Abu_0594	-	protein tyrosine phosphatase
577	 23.41	-1	596048..597337	+	429	157736848	-	Abu_0595	-	hypothetical protein
578	 23.41	-1	597340..599022	+	560	157736849	-	Abu_0596	-	TPR repeat-containing protein
579	 26.62	0	599075..599506	-	143	157736850	-	Abu_0597	-	MarR family transcriptional regulator
580	 26.23	0	599645..599968	+	107	157736851	-	Abu_0598	-	hypothetical protein
581	 22.49	-1	600032..600280	-	82	157736852	-	Abu_0599	-	hypothetical protein
582	 27.16	0	602083..603621	-	512	157736853	-	Abu_0602	-	methyl-accepting chemotaxis protein
583	 25.33	0	603754..603978	+	74	157736854	-	Abu_0603	-	hypothetical protein
584	 22.91	-1	604006..604878	+	290	157736855	-	Abu_0604	-	hypothetical protein
585	 31.96	+1	605069..606520	-	483	157736856	accC2	Abu_0605	-	acetyl CoA carboxylase, biotin carboxylase subunit
586	 29.94	0	606769..607122	-	117	157736857	-	Abu_0606	-	hypothetical protein
587	 25.55	0	607132..607542	-	136	157736858	sufE	Abu_0607	-	putative SUF regulatory protein
588	 28.61	0	607544..608728	-	394	157736859	sufS	Abu_0608	-	selenocysteine lyase/cysteine desulfurase
589	 22.58	-1	608721..609752	-	343	157736860	sufD	Abu_0609	-	Fe-S assembly protein
590	 26.85	0	609739..610509	-	256	157736861	sufC	Abu_0610	-	Fe-S assembly ABC transporter, ATP-binding protein
591	 30.34	0	610513..611982	-	489	157736862	sufB	Abu_0611	-	Fe-S assembly ABC transporter, permease protein
592	 31.91	+1	612179..613375	+	398	157736863	iscS	Abu_0612	-	cysteine desulfurase/aminotransferase (IscS/NifS)
593	 30.68	+1	613406..614386	+	326	157736864	iscU	Abu_0613	-	NifU-like protein
594	 26.44	0	614517..615140	+	207	157736865	-	Abu_0614	-	hypothetical protein
595	 23.00	-1	615142..616389	-	415	157736866	-	Abu_0615	-	GGDEF domain-containing protein
596	 27.91	0	616464..617864	+	466	157736867	argH	Abu_0616	-	argininosuccinate lyase
597	 30.69	+1	617884..618792	-	302	157736868	cheV	Abu_0617	-	chemotaxis signal transduction protein CheV
598	 27.27	0	618843..619502	-	219	157736869	-	Abu_0618	-	MoeB/ThiF family protein
599	 32.10	+1	619565..620050	+	161	157736870	greA	Abu_0619	-	transcription elongation factor GreA
600	 19.46	-2	620063..620761	+	232	157736871	-	Abu_0620	-	hypothetical protein
601	 29.69	0	620773..622746	+	657	157736872	uvrB	Abu_0621	-	excinuclease ABC subunit B
602	 25.96	0	622837..624720	+	627	157736873	-	Abu_0622	-	methyl-accepting chemotaxis protein
603	 28.37	0	624727..625371	-	214	157736874	nth	Abu_0623	-	endonuclease III
604	 19.71	-2	625368..625778	-	136	157736875	-	Abu_0624	-	hypothetical protein
605	 28.39	0	625939..627921	+	660	157736876	-	Abu_0625	-	TonB-dependent receptor protein
26.98	MEAN

3.50	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.