IslandPathversion 1.0

IslandPath Analysis: Aliivibrio salmonicida LFI1238



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 39.44 STD DEV: 3.11
Aliivibrio salmonicida LFI1238 chromosome 1, complete genome - 1..3325165
2820 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
583	 43.12	+1	690051..691430	+	459	209694217	radA	VSAL_I0626	-	DNA repair protein RadA (dna repair protein sms)
584	 43.31	+1	691624..693708	+	694	209694218	fusA	VSAL_I0627	-	elongation factor G (EF-G)
585	 35.90	-1	693819..694052	-	77	209694219	-	VSAL_I0628	-	hypothetical protein
586	 39.20	0	694165..695442	-	425	209694220	codA	VSAL_I0629	-	cytosine deaminase
587	 42.26	0	695453..696706	-	417	209694221	codB	VSAL_I0630	-	cytosine permease
588	 38.64	0	697136..698812	-	558	209694222	-	VSAL_I0631	-	putative AMP-binding acetyl-CoA synthetase
589	 41.71	0	699029..701596	-	855	209694223	mutS	VSAL_I0632	-	DNA mismatch repair protein MutS
590	 42.77	+1	701705..702202	+	165	209694224	-	VSAL_I0633	-	putative competence-damaged protein
591	 39.66	0	702343..703386	+	347	209694225	recA	VSAL_I0634	-	protein RecA (recombinase A)
592	 42.28	0	703629..706211	+	860	209694226	alaS	VSAL_I0635	-	alanyl-tRNA synthetase
593	 37.26	0	706221..707390	+	389	209694227	lysC	VSAL_I0636	-	aspartokinase 2
594	 43.28	+1	707472..707672	+	66	209694228	csrA	VSAL_I0637	-	carbon storage regulator
595	 40.87	0	709310..709561	+	83	209694229	-	VSAL_I0638	-	oxaloacetate decarboxylase 1, subunit gamma
596	 41.50	0	709599..711386	+	595	209694230	-	VSAL_I0639	-	oxaloacetate decarboxylase 2, subunit alpha
597	 41.11	0	711398..712528	+	376	209694231	-	VSAL_I0640	-	oxaloacetate decarboxylase, beta subunit
598	 38.66	0	712625..713056	+	143	209694232	-	VSAL_I0641	-	inner membrane protein
599	 39.08	0	713065..715917	+	950	209694233	-	VSAL_I0642	-	exported pepdidase, putative zinc protease
600	 38.31	0	716044..717609	+	521	209694234	gshA	VSAL_I0643	-	glutamate--cysteine ligase
601	 40.83	0	717676..718275	+	199	209694235	-	VSAL_I0644	-	putative lipoprotein
602	 36.42	0	718309..718827	+	172	209694236	luxS	VSAL_I0645	-	S-ribosylhomocysteine lyase
603	 38.84	0	718895..720166	-	423	209694237	-	VSAL_I0646	-	putative transport protein
604	 35.35	-1	720268..721062	-	264	209694238	-	VSAL_I0647	-	inner membrane protein, putative cytochrome c assembly protein
605	 40.69	0	721225..722610	+	461	209694239	ffh	VSAL_I0648	-	signal recognition particle protein
606	 42.96	+1	722830..723120	+	96	209694240	rpsP	VSAL_I0649	-	30S ribosomal protein S16
607	 40.34	0	723147..723674	+	175	209694241	rimM	VSAL_I0650	-	16S rRNA processing protein RimM
608	 44.53	+1	723697..724446	+	249	209694242	trmD	VSAL_I0651	-	tRNA(guanine-N1)methyltransferase
609	 43.50	+1	724487..724840	+	117	209694243	rplS	VSAL_I0652	-	50S ribosomal protein L19
610	 39.66	0	725054..726127	+	357	209694244	aroF	VSAL_I0653	-	phospho-2-dehydro-3-deoxyheptonate aldolase,Tyr-sensitive
611	 38.89	0	726134..727267	+	377	209694245	tyrA	VSAL_I0654	-	T-protein
612	 36.98	0	727315..728328	-	337	209694246	-	VSAL_I0655	-	putative membrane associated metallopeptidases
613	 34.70	-1	728351..728716	-	121	209694247	-	VSAL_I0656	-	putative signaling protein
614	 36.85	0	730675..732609	+	644	209694248	slt	VSAL_I0658	-	soluble lytic murein transglycosylase precursor
615	 39.76	0	732680..733006	+	108	209694249	trpR	VSAL_I0659	-	trp operon repressor
616	 39.08	0	732975..733496	-	173	209694250	-	VSAL_I0660	-	hypothetical protein
617	 36.14	-1	733504..734679	-	391	209694251	pheA	VSAL_I0661	-	P-protein (includes: chorismate mutase and prephenate dehydratase)
618	 40.50	0	734792..735154	-	120	209694252	raiA	VSAL_I0662	-	ribosome-associated inhibitor A
619	 39.19	0	735514..736281	-	255	209694253	-	VSAL_I0663	-	outer membrane protein
620	 43.69	+1	736402..737376	+	324	209694254	rluD	VSAL_I0664	-	ribosomal large subunit pseudouridine synthase D
621	 38.23	0	737376..738110	+	244	209694255	-	VSAL_I0665	-	hypothetical protein
622	 36.50	0	738205..740790	+	861	209694256	clpB	VSAL_I0666	-	chaperone ClpB (heat-shock protein)
623	 34.56	-1	746868..747275	-	135	209694257	-	VSAL_I0667	-	hypothetical protein
624	 33.73	-1	747265..748509	-	414	209694258	-	VSAL_I0668	-	hypothetical protein
625	 32.86	-2	748509..749141	-	210	209694259	-	VSAL_I0669	-	hypothetical protein
626	 35.85	-1	749107..749622	-	171	209694260	-	VSAL_I0670	-	hypothetical protein
627	 33.80	-1	749726..750157	+	143	209694261	-	VSAL_I0671	-	hypothetical protein
628	 39.24	0	750194..751345	-	383	209694262	-	VSAL_I0672	-	putative chromate transporter
629	 34.39	-1	752403..752591	-	62	209694263	-	VSAL_I0674	-	hypothetical protein
630	 42.07	0	752758..753810	-	350	209694264	dapD	VSAL_I0675	-	tetrahydrodipicolinate succinylase
631	 38.83	0	754187..754477	-	96	209694265	-	VSAL_I0676	-	hypothetical protein
632	 37.25	0	754689..755327	+	212	209694266	-	VSAL_I0677	-	hypothetical protein
633	 37.79	0	755360..756235	-	291	209694267	-	VSAL_I0678	-	HTH-type transciptional regulator, LysR-family
634	 40.91	0	756371..757360	+	329	209694268	-	VSAL_I0679	-	putative C4-dicarboxylate/malic acid transport protein
635	 40.01	0	757441..760824	+	1127	209694269	recC	VSAL_I0680	-	exodeoxyribonuclease V gamma chain
636	 40.58	0	761158..764784	+	1208	209694270	recB	VSAL_I0681	-	exodeoxyribonuclease V beta chain
637	 43.01	+1	764777..766801	+	674	209694271	recD	VSAL_I0682	-	exodeoxyribonuclease V alpha chain
638	 42.17	0	767012..768346	-	444	209694272	dcuB	VSAL_I0683	-	anaerobic c4-dicarboxylate transporter DcuB
639	 38.76	0	768445..769827	-	460	209694273	argH	VSAL_I0684	-	argininosuccinate lyase
640	 42.07	0	770708..772057	-	449	209694274	argA	VSAL_I0685	-	amino-acid acetyltransferase
641	 37.21	0	772199..772585	+	128	209694275	-	VSAL_I0686	-	hypothetical protein
642	 39.06	0	772764..773864	+	366	209694276	mltA	VSAL_I0687	-	membrane-bound lytic murein transglycosylase A precursor
643	 40.93	0	773959..774774	+	271	209694277	-	VSAL_I0688	-	hypothetical protein
644	 39.95	0	774899..775336	-	145	209694278	-	VSAL_I0689	-	conserved hypothetical protein, SufE-related protein
645	 40.64	0	775361..776578	-	405	209694279	sufS	VSAL_I0690	-	cysteine desulfurase
646	 41.14	0	776939..777847	+	302	209694280	gcvA	VSAL_I0691	-	glycine cleavage system transcriptional activator
647	 41.09	0	777840..778226	+	128	209694281	-	VSAL_I0692	-	membrane protein
648	 38.64	0	778223..779314	+	363	209694282	mtfA	VSAL_I0693	-	putative RNA 2'-O-ribose methyltransferase mtfA
649	 41.09	0	779521..780294	-	257	209694283	exo	VSAL_I0694	-	5'-3' exonuclease
650	 41.87	0	780377..781735	-	452	209694284	-	VSAL_I0695	-	hypothetical protein
651	 37.43	0	781864..783426	-	520	209694285	-	VSAL_I0696	-	hypothetical protein
652	 36.16	-1	783603..785834	-	743	209694286	-	VSAL_I0697	-	hypothetical protein
653	 37.59	0	785945..786790	-	281	209694287	queF	VSAL_I0698	-	7-cyano-7-deazaguanine reductase
654	 39.34	0	786899..787447	+	182	209694288	syd	VSAL_I0699	-	protein Syd
655	 42.12	0	787551..788324	+	257	209694289	-	VSAL_I0700	-	hypothetical protein
656	 43.20	+1	788386..788841	-	151	209694290	-	VSAL_I0701	-	hypothetical protein
657	 36.67	0	788841..789110	-	89	209694291	-	VSAL_I0702	-	hypothetical protein
658	 40.87	0	790040..791326	+	428	209694292	-	VSAL_I0703	-	PTS system, cellobiose permease IIC component
659	 36.93	0	791444..791749	+	101	209694293	bglE	VSAL_I0704	-	PTS system, cellobiose-specific component IIB
660	 38.09	0	791836..793245	+	469	209694294	pbgA	VSAL_I0705	-	6-phospho-beta-glucosidase
661	 32.16	-2	793275..794210	+	311	209694295	-	VSAL_I0706	-	putative glucokinase
662	 37.65	0	794221..794544	+	107	209694296	bglI	VSAL_I0707	-	phosphotransferase system (PTS) component IIA
663	 34.22	-1	794614..795624	+	336	209694297	-	VSAL_I0708	-	HTH-type transcriptional regulator, LacI family
664	 38.97	0	795907..797184	+	425	209694298	lamB	VSAL_I0709	-	maltoporin precursor (outer membrane protein S)
665	 35.60	-1	797251..797559	-	102	209694299	-	VSAL_I0710	-	hypothetical protein
666	 39.58	0	797562..798602	-	346	209694300	-	VSAL_I0711	-	hypothetical protein
667	 37.69	0	798705..799025	+	106	209694301	-	VSAL_I0712	-	hypothetical protein
668	 39.14	0	799022..799813	+	263	209694302	truC	VSAL_I0713	-	tRNA pseudouridine synthase C
669	 41.17	0	799918..800772	-	284	209694303	suhB	VSAL_I0714	-	inositol-1-monophosphatase
670	 39.51	0	800930..801658	+	242	209694304	yfhQ	VSAL_I0715	-	hypothetical tRNA/rRNA methyltransferase
671	 40.83	0	801764..802270	+	168	209694305	-	VSAL_I0716	-	HTH-type transcriptional regulator
672	 41.20	0	802296..803516	+	406	209694306	iscS	VSAL_I0717	-	cysteine desulfurase
673	 40.21	0	803550..803927	+	125	209694307	-	VSAL_I0718	-	putative iron-sulphur cluster biosynthesis protein
674	 39.81	0	804048..804371	+	107	209694308	iscA	VSAL_I0719	-	iron-binding protein IscA (iron-sulfur cluster assembly protein)
675	 39.34	0	804387..804902	+	171	209694309	hscB	VSAL_I0720	-	Co-chaperone protein HscB
676	 41.26	0	804938..806791	+	617	209694310	hscA	VSAL_I0721	-	chaperone protein HscA
677	 38.94	0	806794..807132	+	112	209694311	fdx	VSAL_I0722	-	2Fe-2S ferredoxin
678	 37.31	0	807261..807461	+	66	209694312	-	VSAL_I0723	-	iron-sulfur cluster assembly protein
679	 42.19	0	807699..808985	+	428	209694313	pepB	VSAL_I0724	-	peptidase B (aminopeptidase B)
680	 42.30	0	809074..809508	+	144	209694314	ndk	VSAL_I0725	-	nucleoside diphosphate kinase
681	 40.62	0	809739..810890	+	383	209694315	-	VSAL_I0726	-	hypothetical protein
682	 39.37	0	810887..811648	+	253	209694316	-	VSAL_I0727	-	putative type 4 fimbrial biogenesis protein PilF
39.44	MEAN

3.11	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.