IslandPath Analysis: Aliivibrio salmonicida LFI1238



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 39.44   STD DEV: 3.11
Aliivibrio salmonicida LFI1238 chromosome 1, complete genome - 1..3325165
2820 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
331	 43.02	+1	397394..397651	+	85	209693965	rpmA	VSAL_I0362	-	50S ribosomal protein L27
332	 43.94	+1	397929..399107	+	392	209693966	-	VSAL_I0363	-	putative GTP-binding protein
333	 41.41	0	399220..399999	+	259	209693967	-	VSAL_I0364	-	membrane protein
334	 39.84	0	399999..400490	+	163	209693968	-	VSAL_I0365	-	membrane protein
335	 38.70	0	400556..401077	+	173	209693969	folA	VSAL_I0366	-	dihydrofolate reductase type 3
336	 40.39	0	401288..402109	-	273	209693970	apaH	VSAL_I0367	-	bis(5'nucleosyl)-tetraphosphatase
337	 42.33	0	402206..403039	-	277	209693971	ksgA	VSAL_I0368	-	dimethyladenosine transferase
338	 40.61	0	403036..404025	-	329	209693972	pdxA	VSAL_I0369	-	4-hydroxythreonine-4-phosphate dehydrogenase
339	 39.59	0	404018..405328	-	436	209693973	surA	VSAL_I0370	-	chaperone SurA precursor
340	 38.39	0	405399..407753	-	784	209693974	imp	VSAL_I0371	-	organic solvent tolerance protein precursor
341	 39.91	0	407960..408811	+	283	209693975	djlA	VSAL_I0372	-	DnaJ-like protein DjlA
342	 38.33	0	408841..409680	-	279	209693976	-	VSAL_I0373	-	exported protein
343	 40.46	0	409804..410406	-	200	209693977	leuD	VSAL_I0374	-	3-isopropylmalate dehydratase small subunit
344	 44.92	+1	410418..411833	-	471	209693978	leuC	VSAL_I0375	-	3-isopropylmalate dehydratase large subunit
345	 43.13	+1	411849..412940	-	363	209693979	leuB	VSAL_I0376	-	3-isopropylmalate dehydrogenase
346	 42.57	+1	413018..414565	-	515	209693980	leuA	VSAL_I0377	-	2-isopropylmalate synthase
347	 38.79	0	415681..417000	+	439	209693981	-	VSAL_I0379	-	hypothetical protein
348	 42.03	0	416997..420101	+	1034	209693982	-	VSAL_I0380	-	integral membrane protein, AcrB/AcrD/AcrF family
349	 39.72	0	420124..421125	-	333	209693983	-	VSAL_I0381	-	hypothetical protein
350	 42.27	0	421307..422704	+	465	209693984	dnaB	VSAL_I0382	-	replicative DNA helicase
351	 43.36	+1	422726..423802	+	358	209693985	alr	VSAL_I0383	-	alanine racemase
352	 41.77	0	423817..425037	+	406	209693986	-	VSAL_I0384	-	hypothetical protein
353	 39.75	0	425233..426885	+	550	209693987	pgi	VSAL_I0385	-	glucose-6-phosphate isomerase
354	 40.00	0	426981..427475	-	164	209693988	-	VSAL_I0386	-	putative chemotaxis protein
355	 36.67	0	427496..427945	-	149	209693989	zur	VSAL_I0387	-	zinc uptake regulation protein
356	 33.33	-1	428519..428800	+	93	209693990	-	VSAL_I0388	-	hypothetical protein, putative phage gene
357	 33.69	-1	428844..429683	-	279	209693991	-	VSAL_I0389	-	hypothetical protein, putative phage gene
358	 27.74	-2	429880..430272	+	130	209693992	-	VSAL_I0390	-	hypothetical protein, putative phage gene
359	 32.85	-2	430429..431454	+	341	209693993	-	VSAL_I0391	-	hypothetical protein, ADP-ribose binding protein
360	 41.20	0	431463..431678	-	71	209693994	-	VSAL_I0392	-	hypothetical protein, putative phage gene
361	 35.70	-1	431804..432226	+	140	209693995	-	VSAL_I0393	-	transposase
362	 33.86	-1	432244..432810	+	188	209693996	-	VSAL_I0394	-	transposase
363	 36.03	-1	433433..434509	-	358	209693997	-	VSAL_I0396	-	hypothetical protein, putative phage gene
364	 33.43	-1	434540..435601	-	353	209693998	-	VSAL_I0397	-	shufflon-specific DNA recombinase
365	 38.10	0	435736..436806	-	356	209693999	-	VSAL_I0398	-	shufflon-specific DNA recombinase
366	 41.59	0	437014..438030	+	338	209694000	dusA	VSAL_I0399	-	tRNA-dihydrouridine synthase A
367	 40.06	0	438149..438847	+	232	209694001	-	VSAL_I0400	-	hypothetical protein
368	 38.46	0	438951..439223	+	90	209694002	-	VSAL_I0401	-	hypothetical protein
369	 40.28	0	439340..441181	+	613	209694003	cysJ	VSAL_I0402	-	sulfite reductase [NADPH] flavoprotein alpha-component
370	 41.54	0	441181..442911	+	576	209694004	cysI	VSAL_I0403	-	sulfite reductase [NADPH] hemoprotein beta-component
371	 40.03	0	442904..443665	+	253	209694005	cysH	VSAL_I0404	-	phosphoadenosine phosphosulfate reductase
372	 41.77	0	443742..444215	-	157	209694006	-	VSAL_I0405	-	hypothetical protein
373	 46.22	+2	444332..444952	-	206	209694007	fklB	VSAL_I0406	-	FKBP-type peptidyl-prolyl cis-trans isomerase
374	 37.71	0	445092..445754	+	220	209694008	-	VSAL_I0407	-	opacity-associated protein A
375	 40.11	0	445766..446635	-	289	209694009	-	VSAL_I0408	-	integral membrane protein
376	 39.51	0	446635..447087	-	150	209694010	-	VSAL_I0409	-	putative acetyltransferase
377	 34.03	-1	447153..447725	-	190	209694011	-	VSAL_I0410	-	putative DNA-binding protein
378	 39.09	0	447735..449507	-	590	209694012	-	VSAL_I0411	-	hemolysin
379	 38.78	0	449511..449969	-	152	209694013	-	VSAL_I0412	-	membrane protein
380	 38.03	0	450040..450465	-	141	209694014	-	VSAL_I0413	-	hypothetical protein
381	 39.63	0	450478..451224	-	248	209694015	-	VSAL_I0414	-	hypothetical protein
382	 39.08	0	451224..451832	-	202	209694016	-	VSAL_I0415	-	hypothetical protein
383	 38.55	0	451784..452914	-	376	209694017	-	VSAL_I0416	-	hypothetical protein
384	 39.09	0	452914..453504	-	196	209694018	-	VSAL_I0417	-	membrane protein
385	 33.33	-1	453631..454044	+	137	209694019	-	VSAL_I0418	-	membrane protein
386	 40.54	0	454084..456066	-	660	209694020	cpdB	VSAL_I0419	-	2',3'-cyclic-nucleotide 2'-phosphodiesterase precursor
387	 40.37	0	456434..457342	+	302	209694021	cysD	VSAL_I0420	-	sulfate adenylyltransferase subunit 2
388	 40.50	0	457371..458807	+	478	209694022	cysN	VSAL_I0421	-	sulfate adenylyltransferase subunit 1
389	 39.76	0	458830..460557	+	575	209694023	-	VSAL_I0422	-	ion transporter superfamily protein
390	 39.02	0	460572..461204	+	210	209694024	cysC	VSAL_I0423	-	adenylylsulfate kinase
391	 37.79	0	461248..462144	-	298	209694025	-	VSAL_I0424	-	hypothetical protein
392	 36.21	-1	462468..462953	-	161	209694026	-	VSAL_I0425	-	hypothetical protein
393	 39.92	0	462963..464222	-	419	209694027	-	VSAL_I0426	-	predicted permease
394	 38.26	0	464216..464905	-	229	209694028	-	VSAL_I0427	-	ABC transporter, ATP-binding protein
395	 41.12	0	464942..465583	-	213	209694029	-	VSAL_I0428	-	hypothetical protein
396	 37.46	0	465635..465925	-	96	209694030	-	VSAL_I0429	-	membrane protein
397	 37.86	0	465991..466542	-	183	209694031	-	VSAL_I0430	-	hypothetical protein
398	 35.71	-1	466791..467000	+	69	209694032	-	VSAL_I0431	-	hypothetical protein
399	 38.86	0	467069..467719	-	216	209694033	msrA	VSAL_I0432	-	peptide methionine sulfoxide reductase MSRA
400	 40.48	0	467761..469482	+	573	209694034	-	VSAL_I0433	-	surface antigen protein
401	 36.78	0	469479..473276	+	1265	209694035	-	VSAL_I0434	-	hypothetical protein
402	 38.14	0	484735..485046	+	103	209694036	-	VSAL_I0435	-	transposase
403	 36.21	-1	485043..485390	+	115	209694037	-	VSAL_I0436	-	transposase
404	 39.72	0	485462..486949	+	495	209694038	-	VSAL_I0437	-	transposase
405	 36.54	0	488216..488527	+	103	209694039	-	VSAL_I0439	-	transposase
406	 38.85	0	488524..489393	+	289	209694040	-	VSAL_I0440	-	transposase
407	 34.74	-1	489668..490945	-	425	209694041	-	VSAL_I0441	-	sodium/proton antiporter
408	 38.93	0	491126..494806	+	1226	209694042	metH	VSAL_I0442	-	methionine synthase
409	 35.94	-1	495249..496130	-	293	209694043	-	VSAL_I0444	-	transposase
410	 38.92	0	497687..498796	+	369	209694044	-	VSAL_I0445	-	aminotransferase class-V
411	 35.95	-1	498845..500602	-	585	209694045	-	VSAL_I0446	-	O-antigen polymerase
412	 40.16	0	500682..503510	-	942	209694046	uvrA	VSAL_I0447	-	UvrABC system protein A
413	 38.62	0	503682..504551	-	289	209694047	galU	VSAL_I0448	-	UTP-glucose-1-phosphate uridylyltransferase
414	 33.09	-2	504688..505092	-	134	209694048	-	VSAL_I0449	-	hypothetical protein
415	 39.17	0	505085..506215	-	376	209694049	-	VSAL_I0450	-	putative glycosyl transferase
416	 37.89	0	506219..507424	-	401	209694050	-	VSAL_I0451	-	putative glycosyl transferase
417	 38.54	0	507421..508419	-	332	209694051	-	VSAL_I0452	-	putative glycosyl transferase
418	 36.23	-1	508412..509794	-	460	209694052	-	VSAL_I0453	-	membrane protein
419	 34.49	-1	509794..510999	-	401	209694053	-	VSAL_I0454	-	membrane protein
420	 34.04	-1	512441..513007	-	188	209694054	-	VSAL_I0456	-	transposase
421	 35.70	-1	513025..513447	-	140	209694055	-	VSAL_I0457	-	transposase
422	 40.21	0	514317..514898	-	193	209694056	-	VSAL_I0458	-	polysaccharide biosynthesis/export protein
423	 36.52	0	514899..516215	-	438	209694057	-	VSAL_I0459	-	hypothetical protein
424	 45.47	+1	517928..518479	+	183	209694058	ssb	VSAL_I0461	-	single-stranded DNA-binding protein
425	 35.24	-1	518552..519181	-	209	209694059	-	VSAL_I0462	-	membrane protein
426	 34.04	-1	519233..519799	-	188	209694060	-	VSAL_I0463	-	transposase
427	 35.70	-1	519817..520239	-	140	209694061	-	VSAL_I0464	-	transposase
428	 36.86	0	520546..522531	+	661	209694062	-	VSAL_I0465	-	putative membrane associated signaling protein
429	 36.54	0	522657..524120	+	487	209694063	mshI	VSAL_I0466	-	type IV pilus, mannose-sensitive hemagglutinin D (MSHI)
430	 34.43	-1	524113..524751	+	212	209694064	mshJ	VSAL_I0467	-	type IV pilus, mannose-sensitive hemagglutinin D (MSHJ)
39.44	MEAN

3.11	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.