IslandPathversion 1.0

IslandPath Analysis: Aliivibrio salmonicida LFI1238



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 39.44 STD DEV: 3.11
Aliivibrio salmonicida LFI1238 chromosome 1, complete genome - 1..3325165
2820 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
2557	 40.62	0	3017678..3018541	+	287	209696191	psd	VSAL_I2785	-	phosphatidylserine decarboxylase proenzyme
2558	 45.07	+1	3018652..3019614	+	320	209696192	-	VSAL_I2786	-	integral membrane protein
2559	 42.25	0	3019655..3020641	-	328	209696193	-	VSAL_I2787	-	putative lysyl-tRNA synthetase
2560	 44.07	+1	3020995..3022848	+	617	209696194	-	VSAL_I2788	-	fumarate reductase complex, flavoprotein subunit
2561	 42.47	0	3022848..3023591	+	247	209696195	frdB	VSAL_I2789	-	fumarate reductase complex, iron-sulfur protein
2562	 41.67	0	3023594..3023977	+	127	209696196	frdC	VSAL_I2790	-	fumarate reductase complex, membrane anchor subunit C
2563	 43.25	+1	3023989..3024351	+	120	209696197	frdD	VSAL_I2791	-	fumarate reductase complex, membrane anchor subunit D
2564	 40.92	0	3024543..3025109	-	188	209696198	efp	VSAL_I2792	-	elongation factor P (EF-P)
2565	 40.18	0	3025142..3026164	+	340	209696199	-	VSAL_I2793	-	hypothetical protein
2566	 41.85	0	3026252..3027214	-	320	209696200	pfkA	VSAL_I2794	-	6-phosphofructokinase isozyme 1
2567	 41.94	0	3027433..3028338	-	301	209696201	fieF	VSAL_I2795	-	ferrous-iron efflux pump FieF
2568	 38.46	0	3028498..3029004	-	168	209696202	-	VSAL_I2796	-	putative periplasmic protein CpxP
2569	 39.47	0	3029199..3029882	+	227	209696203	cpxR	VSAL_I2797	-	transcriptional regulator, CpxR
2570	 41.68	0	3029888..3031276	+	462	209696204	cpxA	VSAL_I2798	-	sensor protein CpxA
2571	 42.29	0	3031372..3031851	+	159	209696205	yibK	VSAL_I2799	-	hypothetical tRNA/rRNA methyltransferase
2572	 45.99	+2	3031953..3032774	-	273	209696206	cysE	VSAL_I2800	-	serine acetyltransferase
2573	 43.51	+1	3032793..3033824	-	343	209696207	gpsA	VSAL_I2801	-	glycerol-3-phosphate dehydrogenase [NAD(P)+]
2574	 42.03	0	3033990..3034472	-	160	209696208	secB	VSAL_I2802	-	protein-export protein SecB
2575	 38.81	0	3034600..3035037	-	145	209696209	-	VSAL_I2803	-	hypothetical protein
2576	 40.05	0	3035259..3036404	+	381	209696210	-	VSAL_I2804	-	putative exported peptidase
2577	 42.06	0	3036485..3036988	-	167	209696211	fxsA	VSAL_I2805	-	protein FxsA
2578	 40.92	0	3037403..3038851	+	482	209696212	aspA	VSAL_I2806	-	aspartate ammonia-lyase(aspartase)
2579	 37.78	0	3039055..3039369	+	104	209696213	-	VSAL_I2807	-	transposase
2580	 35.92	-1	3039366..3039713	+	115	209696214	-	VSAL_I2808	-	transposase
2581	 41.81	0	3042841..3044715	+	624	209696215	dsbD	VSAL_I2811	-	thiol:disulfide interchange protein DsbD precursor
2582	 39.08	0	3044823..3045623	+	266	209696216	nagB	VSAL_I2812	-	glucosamine-6-phosphate deaminase
2583	 41.37	0	3046322..3048274	+	650	209696217	mtlA	VSAL_I2813	-	PTS system, mannitol-specific EIICBA component
2584	 39.77	0	3048353..3049501	+	382	209696218	mtlD	VSAL_I2814	-	mannitol-1-phosphate 5-dehydrogenase
2585	 36.91	0	3049551..3050081	+	176	209696219	mtlR	VSAL_I2815	-	mannitol operon repressor (mannitol repressor protein)
2586	 39.89	0	3050102..3051352	-	416	209696220	-	VSAL_I2816	-	MFS transporter
2587	 42.97	+1	3051377..3051874	-	165	209696221	-	VSAL_I2817	-	hypothetical protein
2588	 40.72	0	3051892..3052893	-	333	209696222	gap	VSAL_I2818	-	glyceraldehyde 3-phosphate dehydrogenase
2589	 37.88	0	3052910..3053239	-	109	209696223	arsR	VSAL_I2819	-	transcriptional regulator, ArsR family
2590	 37.34	0	3053485..3054483	+	332	209696224	-	VSAL_I2820	-	hypothetical protein
2591	 41.30	0	3054683..3055912	+	409	209696225	ndh	VSAL_I2821	-	NADH dehydrogenase
2592	 44.46	+1	3055981..3057813	-	610	209696226	glmS	VSAL_I2822	-	glucosamine--fructose-6-phosphate aminotransferase
2593	 39.48	0	3057933..3058697	-	254	209696227	-	VSAL_I2823	-	putative glucitol operon repressor
2594	 42.38	0	3058924..3059553	+	209	209696228	-	VSAL_I2824	-	transcriptional regulator, LuxR response regulator receiver
2595	 39.74	0	3059641..3060264	+	207	209696229	-	VSAL_I2825	-	integral membrane protein, MarC family
2596	 39.14	0	3060371..3061696	-	441	209696230	-	VSAL_I2826	-	transposase
2597	 39.47	0	3061810..3062151	+	113	209696231	-	VSAL_I2827	-	hypothetical protein
2598	 44.66	+1	3062162..3063865	+	567	209696232	-	VSAL_I2828	-	putative sodium/solute symporter
2599	 43.72	+1	3063960..3067406	-	1148	209696233	-	VSAL_I2829	-	membrane associated response regulator, histidine kinase
2600	 43.49	+1	3067539..3068720	-	393	209696234	-	VSAL_I2830	-	MFS transporter
2601	 38.46	0	3068890..3070722	+	610	209696235	-	VSAL_I2831	-	putative nucleotidyltransferases
2602	 40.92	0	3070724..3071356	+	210	209696236	-	VSAL_I2832	-	putative exonuclease
2603	 45.49	+1	3071562..3073511	+	649	209696237	acs	VSAL_I2833	-	acetyl-coenzyme A synthetase
2604	 40.67	0	3073970..3074419	+	149	209696238	aroQ	VSAL_I2834	-	3-dehydroquinate dehydratase
2605	 45.83	+2	3074450..3074905	+	151	209696239	accB	VSAL_I2835	-	biotin carboxyl carrier protein of acetyl-CoA carboxylase
2606	 42.56	+1	3074918..3076261	+	447	209696240	accC	VSAL_I2836	-	biotin carboxylase (acetyl-CoA carboxylase subunit A)
2607	 44.07	+1	3076378..3077262	+	294	209696241	prmA	VSAL_I2837	-	ribosomal protein L11 methyltransferase
2608	 44.99	+1	3077458..3078426	+	322	209696242	dusB	VSAL_I2838	-	tRNA-dihydrouridine synthase B
2609	 39.39	0	3078449..3078745	+	98	209696243	fis	VSAL_I2839	-	DNA-binding protein Fis
2610	 44.06	+1	3078885..3079229	-	114	209696244	-	VSAL_I2840	-	hypothetical protein
2611	 35.95	-1	3079278..3079697	-	139	209696245	-	VSAL_I2841	-	HTH-type transcriptional regulator, MerR-family
2612	 45.70	+2	3079982..3081574	+	530	209696246	purH	VSAL_I2842	-	bifunctional purine biosynthesis protein PurH
2613	 45.94	+2	3081756..3083048	+	430	209696247	purD	VSAL_I2843	-	phosphoribosylamine--glycine ligase
2614	 39.14	0	3083164..3084489	+	441	209696248	-	VSAL_I2844	-	transposase
2615	 38.44	0	3084535..3085239	-	234	209696249	-	VSAL_I2845	-	putative lipoprotein
2616	 41.76	0	3085279..3085551	-	90	209696250	hupA	VSAL_I2846	-	DNA-binding protein HU-alpha
2617	 39.55	0	3085774..3086835	+	353	209696251	-	VSAL_I2847	-	putative modulator of ion transport
2618	 35.35	-1	3086932..3087525	-	197	209696252	-	VSAL_I2848	-	hypothetical protein
2619	 35.19	-1	3087597..3088511	+	304	209696253	-	VSAL_I2849	-	putative D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain
2620	 36.62	0	3088552..3089007	-	151	209696254	-	VSAL_I2850	-	hypothetical protein
2621	 41.76	0	3089204..3090271	-	355	209696255	hemE	VSAL_I2851	-	uroporphyrinogen decarboxylase
2622	 40.79	0	3091004..3092197	+	397	209696256	-	VSAL_I2853	-	transposase
2623	 36.86	0	3092825..3093334	+	169	209696257	-	VSAL_I2854	-	Regulator of RNA polymerase sigma (70) subunit
2624	 38.06	0	3094233..3094634	-	133	209696258	csgF	VSAL_I2856	-	assembly/transport component in curli production, CsgF precursor
2625	 33.77	-1	3094644..3095105	-	153	209696259	csgE	VSAL_I2857	-	assembly/transport component in curli production, CsgE precursor
2626	 28.55	-2	3095102..3095749	-	215	209696260	csgD	VSAL_I2858	-	probable CsgAB operon transcriptional regulatory protein
2627	 34.04	-1	3096149..3096715	-	188	209696261	-	VSAL_I2860	-	transposase
2628	 35.70	-1	3096733..3097155	-	140	209696262	-	VSAL_I2861	-	transposase
2629	 35.94	-1	3097957..3098838	-	293	209696263	-	VSAL_I2863	-	transposase
2630	 35.13	-1	3099392..3100336	+	314	209696264	csgA	VSAL_I2864	-	curlin associated precursor, CsgA like
2631	 43.25	+1	3100411..3104616	-	1401	209696265	rpoC	VSAL_I2865	-	DNA-directed RNA polymerase beta' chain
2632	 42.05	0	3104688..3108716	-	1342	209696266	rpoB	VSAL_I2866	-	DNA-directed RNA polymerase, beta-subunit
2633	 45.08	+1	3108948..3109313	-	121	209696267	rplL	VSAL_I2867	-	50S ribosomal subunit protein L7/L12
2634	 44.44	+1	3109369..3109863	-	164	209696268	rplJ	VSAL_I2868	-	50S ribosomal subunit protein L10
2635	 42.13	0	3110109..3110813	-	234	209696269	rplA	VSAL_I2869	-	50S ribosomal protein L1
2636	 44.52	+1	3110818..3111246	-	142	209696270	rplK	VSAL_I2870	-	50S ribosomal protein L11
2637	 40.66	0	3111366..3111911	-	181	209696271	nusG	VSAL_I2871	-	transcription antitermination protein NusG
2638	 39.15	0	3111924..3112301	-	125	209696272	secE	VSAL_I2872b	-	preprotein translocase sece subunit
2639	 35.94	-1	3114297..3115178	+	293	209696273	-	VSAL_I2874	-	transposase
2640	 31.82	-2	3115312..3116235	+	307	209696274	coaA	VSAL_I2875	-	pantothenate kinase
2641	 38.65	0	3116236..3117195	-	319	209696275	birA	VSAL_I2876	-	bifunctional protein BirA, biotin operon repressor and biotin-[acetyl-CoA carboxylase] synthetase
2642	 33.43	-1	3117192..3118232	-	346	209696276	murB	VSAL_I2877	-	UDP-N-acetylenolpyruvoylglucosamine reductase
2643	 29.60	-2	3118304..3118732	+	142	209696277	-	VSAL_I2878	-	hypothetical protein
2644	 35.33	-1	3118812..3120164	+	450	209696278	pssA	VSAL_I2879	-	CDP-diacylglycerol--serine O-phosphatidyltransferase
2645	 37.78	0	3120327..3120641	+	104	209696279	-	VSAL_I2880	-	transposase
2646	 36.21	-1	3120638..3120985	+	115	209696280	-	VSAL_I2881	-	transposase
2647	 39.78	0	3121057..3122544	+	495	209696281	-	VSAL_I2882	-	transposase
2648	 36.21	-1	3128367..3128852	+	161	209696282	-	VSAL_I2883	-	putative RNA binding protein
2649	 34.46	-1	3128806..3129603	-	265	209696283	murI	VSAL_I2884	-	glutamate racemase
2650	 37.80	0	3129664..3130335	-	223	209696284	-	VSAL_I2885	-	hypothetical protein
2651	 38.02	0	3130386..3132242	-	618	209696285	-	VSAL_I2886	-	putative outer membrane associated TonB dependent receptor
2652	 37.49	0	3132667..3133773	+	368	209696286	trmA	VSAL_I2887	-	tRNA (uracil-5)-methyltransferase
2653	 37.07	0	3133846..3134220	-	124	209696287	-	VSAL_I2888	-	inner membrane protein
2654	 41.06	0	3134265..3134963	-	232	209696288	-	VSAL_I2889	-	HTH-type transcriptional regulator, TetR-family
2655	 40.47	0	3135177..3136592	+	471	209696289	sthA	VSAL_I2890	-	soluble pyridine nucleotide transhydrogenase
2656	 39.26	0	3136681..3138012	-	443	209696290	vcmD	VSAL_I2891	-	multidrug efflux pump
39.44	MEAN

3.11	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.