version 1.0
Aliivibrio salmonicida LFI1238 chromosome 1, complete genome - 1..3325165 2820 proteins Pos %G+C SD Location Strand Length PID Gene Synonym Code Product 2454 40.38 0 2902179..2903696 - 505 209696088 - VSAL_I2680 - hypothetical protein 2455 42.44 0 2903883..2904563 + 226 209696089 - VSAL_I2681 - hypothetical protein 2456 43.82 +1 2904591..2905877 + 428 209696090 - VSAL_I2682 - putative phosphate transporter 2457 42.48 0 2906052..2906663 + 203 209696091 - VSAL_I2683 - hypothetical protein 2458 39.65 0 2906687..2908174 - 495 209696092 - VSAL_I2684 - transposase 2459 36.21 -1 2908246..2908593 - 115 209696093 - VSAL_I2685 - transposase 2460 38.14 0 2908590..2908901 - 103 209696094 - VSAL_I2686 - transposase 2461 38.89 0 2909078..2909779 - 233 209696095 - VSAL_I2687 - hypothetical protein 2462 38.59 0 2909780..2911339 - 519 209696096 exeA VSAL_I2688 - general secretion pathway protein A 2463 40.60 0 2911481..2912704 + 407 209696097 cca VSAL_I2689 - tRNA nucleotidyltransferase (multifunctional CCA protein) 2464 37.56 0 2912770..2913573 - 267 209696098 - VSAL_I2690 - putative undecaprenyl-diphosphatase (bacitracin resistance protein) 2465 34.97 -1 2913582..2914070 - 162 209696099 - VSAL_I2691 - putative 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase 2466 40.11 0 2914067..2914420 - 117 209696100 folB VSAL_I2692 - dihydroneopterin aldolase 2467 43.47 +1 2914566..2915147 + 193 209696101 - VSAL_I2693 - membrane protein 2468 43.17 +1 2915221..2916237 - 338 209696102 gcp VSAL_I2694 - O-sialoglycoprotein endopeptidase (glycoprotease) 2469 41.67 0 2916710..2917153 + 147 209696103 - VSAL_I2695 - hypothetical protein 2470 41.17 0 2917267..2919027 + 586 209696104 dnaG VSAL_I2696 - DNA primase 2471 40.43 0 2919125..2920957 + 610 209696105 rpoD VSAL_I2697 - RNA polymerase sigma factor RpoD (sigma-70) 2472 39.94 0 2922389..2923933 + 514 209696106 - VSAL_I2699 - AMP-binding enzyme, putative long chain fatty acid Co-A ligase, acetyl-CoA synthetase 2473 35.32 -1 2924023..2924424 + 133 209696107 - VSAL_I2700 - membrane protein 2474 41.90 0 2924806..2926218 + 470 209696108 pykF VSAL_I2701 - pyruvate kinase I 2475 37.42 0 2926447..2927106 + 219 209696109 - VSAL_I2702 - putative transcriptional regulator, GntR family 2476 34.57 -1 2927161..2927322 - 53 209696110 - VSAL_I2703 - hypothetical protein 2477 34.13 -1 2927417..2929306 - 629 209696111 - VSAL_I2704 - membrane associated GGDEF protein 2478 39.60 0 2929412..2929906 - 164 209696112 ilvH VSAL_I2705 - acetolactate synthase isozyme III small subunit 2479 40.42 0 2929906..2931627 - 573 209696113 ilvI VSAL_I2706 - acetolactate synthase isozyme III large subunit 2480 39.72 0 2931788..2933275 - 495 209696114 - VSAL_I2707 - transposase 2481 36.21 -1 2933347..2933694 - 115 209696115 - VSAL_I2708 - transposase 2482 37.78 0 2933691..2934005 - 104 209696116 - VSAL_I2709 - transposase 2483 41.60 0 2934250..2936124 + 624 209696117 argHA VSAL_I2710 - bifunctional protein ArgHA (argininosuccinate lyase) 2484 35.98 -1 2936277..2936540 - 87 209696118 - VSAL_I2711 - hypothetical protein 2485 43.56 +1 2936668..2938134 - 488 209696119 - VSAL_I2712 - dihydrolipoyl dehydrogenase (dihydrolipoamide dehydrogenase) 2486 41.29 0 2938224..2938952 - 242 209696120 - VSAL_I2713 - hybrid peroxiredoxin (thioredoxin reductase) 2487 42.02 0 2939132..2940040 + 302 209696121 oxyR VSAL_I2714 - transcriptional regulator OxyR, LysR family (hydrogen peroxide-inducible genes activator) 2488 41.66 0 2940107..2942605 - 832 209696122 mrcA VSAL_I2715 - penicillin-binding protein 1A 2489 38.54 0 2942744..2943742 + 332 209696123 pilM VSAL_I2716 - fimbrial assembly protein PilM 2490 38.95 0 2943727..2944296 + 189 209696124 pilN VSAL_I2717 - fimbrial assembly protein PilN 2491 37.11 0 2944289..2944870 + 193 209696125 pilO VSAL_I2718 - fimbrial assembly protein PilO 2492 37.96 0 2944863..2945381 + 172 209696126 pilP VSAL_I2719 - fimbrial assembly protein PilP 2493 36.05 -1 2946774..2947655 - 293 209696127 - VSAL_I2721 - transposase 2494 42.77 +1 2948361..2948879 + 172 209696128 aroK VSAL_I2722 - shikimate kinase 1 2495 41.60 0 2948918..2950006 + 362 209696129 aroB VSAL_I2723 - 3-dehydroquinate synthase 2496 37.22 0 2950010..2951527 + 505 209696130 - VSAL_I2724 - putative cell division protein 2497 38.51 0 2951599..2952429 + 276 209696131 dam VSAL_I2725 - DNA adenine methylase 2498 41.45 0 2952552..2953229 + 225 209696132 rpe VSAL_I2726 - ribulose-phosphate 3-epimerase 2499 41.52 0 2953235..2953918 + 227 209696133 gph VSAL_I2727 - phosphoglycolate phosphatase 2500 43.36 +1 2954038..2955054 + 338 209696134 trpS VSAL_I2728 - tryptophanyl-tRNA synthetase 2501 36.79 0 2955151..2955729 + 192 209696135 trpG VSAL_I2729 - anthranilate synthase component II (glutamine amido transferase) 2502 37.78 0 2955955..2956269 + 104 209696136 - VSAL_I2730 - transposase 2503 36.49 0 2956266..2956613 + 115 209696137 - VSAL_I2731 - transposase 2504 39.78 0 2956685..2958172 + 495 209696138 - VSAL_I2732 - transposase 2505 44.12 +1 2958360..2959574 + 404 209696139 aruC VSAL_I2733 - acetylornithine aminotransferase/succinylornithine transaminase 2506 41.08 0 2959736..2960755 + 339 209696140 astA VSAL_I2734 - arginine N-succinyltransferase 2507 46.23 +2 2960768..2962225 + 485 209696141 astD VSAL_I2735 - succinylglutamic semialdehyde dehydrogenase 2508 38.74 0 2962238..2963032 + 264 209696142 - VSAL_I2736 - hypothetical protein 2509 40.44 0 2963117..2963749 - 210 209696143 crp VSAL_I2737 - cyclic AMP receptor protein 2510 42.29 0 2963995..2964396 + 133 209696144 - VSAL_I2738 - OsmC-like protein 2511 42.25 0 2964469..2965803 - 444 209696145 hslU VSAL_I2739 - ATP-dependent hsl protease ATP-binding subunit HslU (heat shock protein HslU) 2512 42.00 0 2965816..2966346 - 176 209696146 hslV VSAL_I2740 - ATP-dependent protease HslV (heat shock protein HslV) 2513 40.53 0 2966525..2967094 - 189 209696147 - VSAL_I2741 - putative cell division protein FtsN 2514 42.86 +1 2967266..2968273 - 335 209696148 cytR VSAL_I2742 - HTH-type transcriptional repressor CytR 2515 43.55 +1 2968477..2970678 - 733 209696149 priA VSAL_I2743 - primosomal protein N' 2516 43.38 +1 2970934..2971152 + 72 209696150 rpmE VSAL_I2744 - 50S ribosomal protein L31 2517 42.39 0 2971385..2972632 + 415 209696151 maeB VSAL_I2745 - NADP-dependent malic enzyme 2518 40.50 0 2972973..2973293 - 106 209696152 metJ VSAL_I2746 - Met repressor (Met regulon regulatory protein MetJ) 2519 43.87 +1 2973481..2974647 + 388 209696153 metB VSAL_I2747 - cystathionine gamma-synthase (O-succinylhomoserin (thiol)-lyase) 2520 42.09 0 2974647..2977067 + 806 209696154 metL VSAL_I2748 - bifunctional aspartokinase/homoserine dehydrogenase II 2521 38.87 0 2977409..2978383 + 324 209696155 leuO VSAL_I2749 - probable HTH-type transcriptional regulator LeuO 2522 39.54 0 2978631..2980466 + 611 209696156 - VSAL_I2750 - putative AMP-binding enzyme 2523 37.78 0 2980853..2981167 + 104 209696157 - VSAL_I2751 - transposase 2524 36.21 -1 2981164..2981511 + 115 209696158 - VSAL_I2752 - transposase 2525 39.65 0 2981583..2983070 + 495 209696159 - VSAL_I2753 - transposase 2526 43.25 +1 2983188..2985818 - 876 209696160 ppc VSAL_I2754 - phosphoenolpyruvate carboxylase 2527 40.46 0 2985996..2987132 - 378 209696161 argE VSAL_I2755 - acetylornithine deacetylase 2528 40.60 0 2987339..2988343 + 334 209696162 argC VSAL_I2756 - N-acetyl-gamma-glutamyl-phosphate reductase 2529 42.55 +1 2988347..2989138 + 263 209696163 argB VSAL_I2757 - acetylglutamate kinase 2530 42.24 0 2989206..2990417 + 403 209696164 argG VSAL_I2758 - argininosuccinate synthase 2531 39.78 0 2990544..2992031 - 495 209696165 - VSAL_I2759 - transposase 2532 36.21 -1 2992103..2992450 - 115 209696166 - VSAL_I2760 - transposase 2533 37.78 0 2992447..2992761 - 104 209696167 - VSAL_I2761 - transposase 2534 40.13 0 2992910..2993806 - 298 209696168 metF VSAL_I2762 - 5,10-methylenetetrahydrofolate reductase 2535 44.22 +1 2994101..2994550 - 149 209696169 rplI VSAL_I2763 - 50S ribosomal subunit protein L9 2536 44.74 +1 2994591..2994818 - 75 209696170 rpsR VSAL_I2764 - 30S ribosomal subunit protein S18 2537 44.22 +1 2994834..2995136 - 100 209696171 priB VSAL_I2765 - primosomal replication protein N 2538 45.93 +2 2995145..2995525 - 126 209696172 rpsF VSAL_I2766 - 30S ribosomal protein S6 2539 43.28 +1 2995758..2996501 - 247 209696173 rlmB VSAL_I2767 - 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB 2540 43.13 +1 2996572..2999073 - 833 209696174 rnr VSAL_I2768 - ribonuclease R 2541 37.09 0 2999153..2999578 - 141 209696175 - VSAL_I2769 - putative transcriptional regulator 2542 39.24 0 2999713..3000897 + 394 209696176 hmp VSAL_I2770 - flavohemoprotein 2543 42.81 +1 3000998..3001630 - 210 209696177 motX VSAL_I2771 - sodium-type polar flagellar protein MotX 2544 42.37 0 3001857..3003173 - 438 209696178 purA VSAL_I2772 - adenylosuccinate synthetase 2545 41.94 0 3003352..3003537 - 61 209696179 - VSAL_I2773 - hypothetical protein 2546 39.55 0 3003625..3004509 - 294 209696180 hflC VSAL_I2774 - HflC protein 2547 40.44 0 3004512..3005735 - 407 209696181 hflK VSAL_I2775 - HflK protein 2548 41.29 0 3005754..3007073 - 439 209696182 hflX VSAL_I2776 - HflX protein, putative GTP-binding protein 2549 39.70 0 3007118..3007384 - 88 209696183 hfq VSAL_I2777 - RNA-binding protein Hfq 2550 41.61 0 3007479..3008420 - 313 209696184 miaA VSAL_I2778 - tRNA delta-2-isopentenylpyrophosphate (IPP) transferase 2551 39.56 0 3008413..3010371 - 652 209696185 mutL VSAL_I2779 - DNA mismatch repair protein MutL 2552 38.51 0 3010386..3012125 - 579 209696186 amiB VSAL_I2780 - N-acetylmuramoyl-L-alanine amidase 2553 39.14 0 3012119..3012583 - 154 209696187 - VSAL_I2781 - hypothetical protein 39.44 MEAN 3.11 STD DEV
Last Updated: Dec 04, 2008
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.
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