IslandPathversion 1.0

IslandPath Analysis: Aliivibrio salmonicida LFI1238



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 39.44 STD DEV: 3.11
Aliivibrio salmonicida LFI1238 chromosome 1, complete genome - 1..3325165
2820 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1694	 41.69	0	1996459..1997787	-	442	209695328	-	VSAL_I1861	-	sodium/proton antiporter
1695	 40.39	0	1997835..1998500	-	221	209695329	rnt	VSAL_I1862	-	ribonuclease T
1696	 38.57	0	1998701..1999579	+	292	209695330	motY	VSAL_I1863	-	sodium-type flagellar protein MotY precursor
1697	 37.47	0	1999618..2000052	-	144	209695331	-	VSAL_I1864	-	putative outer membrane protein
1698	 41.49	0	2000172..2000588	-	138	209695332	gloA	VSAL_I1865	-	lactoylglutathione lyase
1699	 39.62	0	2000625..2001260	-	211	209695333	nth	VSAL_I1866	-	endonuclease III
1700	 40.17	0	2001278..2001964	-	228	209695334	rnfE	VSAL_I1867	-	electron transport complex protein RnfE
1701	 41.07	0	2001964..2002596	-	210	209695335	rnfG	VSAL_I1868	-	electron transport complex protein RnfG
1702	 40.53	0	2002600..2003655	-	351	209695336	rnfD	VSAL_I1869	-	electron transport complex protein RnfD
1703	 42.58	+1	2003658..2005808	-	716	209695337	rnfC	VSAL_I1870	-	electron transport complex protein RnfC
1704	 40.85	0	2005812..2006396	-	194	209695338	rnfB	VSAL_I1871	-	electron transport complex protein RnfB
1705	 39.18	0	2006399..2006980	-	193	209695339	rnfA	VSAL_I1872	-	electron transport complex protein RnfA
1706	 39.00	0	2007661..2009691	+	676	209695340	uvrB	VSAL_I1873	-	UvrABS system protein B (excinuclease ABC subunit B)
1707	 39.93	0	2010023..2011432	+	469	209695341	luxO	VSAL_I1874	-	two component signal response regulator LuxO
1708	 36.04	-1	2011444..2011776	+	110	209695342	luxU	VSAL_I1875	-	phosphorelay protein LuxU
1709	 40.96	0	2011826..2012704	-	292	209695343	-	VSAL_I1876	-	hypothetical protein
1710	 39.39	0	2013073..2014062	+	329	209695344	moaA	VSAL_I1877	-	molybdenum cofactor biosynthesis protein A
1711	 40.00	0	2014075..2014554	+	159	209695345	moaC	VSAL_I1878	-	molybdenum cofactor biosynthesis protein C
1712	 40.65	0	2014551..2014796	+	81	209695346	moaD	VSAL_I1879	-	molybdopterin-converting factor subunit 1
1713	 42.06	0	2014798..2015244	+	148	209695347	moaE	VSAL_I1880	-	molybdopterin-converting factor subunit 2
1714	 41.20	0	2015333..2016298	-	321	209695348	-	VSAL_I1881	-	hypothetical protein
1715	 40.56	0	2016302..2017810	-	502	209695349	-	VSAL_I1882	-	membrane protein
1716	 39.17	0	2017913..2018683	-	256	209695350	-	VSAL_I1883	-	putative lipoprotein
1717	 41.03	0	2018763..2019737	-	324	209695351	-	VSAL_I1884	-	putative methyltransferase
1718	 39.64	0	2019787..2020515	-	242	209695352	-	VSAL_I1885	-	putative methyltransferase
1719	 42.85	+1	2021027..2022802	+	591	209695353	aspS	VSAL_I1886	-	aspartyl-tRNA synthetase
1720	 43.87	+1	2022901..2023422	+	173	209695354	ruvC	VSAL_I1887	-	crossover junction endodeoxyribonuclease RuvC
1721	 40.26	0	2023519..2024139	+	206	209695355	ruvA	VSAL_I1888	-	holliday junction ATP-dependent DNA helicase RuvA
1722	 41.22	0	2024185..2025198	+	337	209695356	ruvB	VSAL_I1889	-	holliday junction ATP-dependent DNA helicase RuvB
1723	 40.38	0	2025572..2027161	+	529	209695357	cydA	VSAL_I1890	-	cytochrome d ubiquinol oxidase subunit I
1724	 39.40	0	2027179..2028315	+	378	209695358	cydB	VSAL_I1891	-	cytochrome d ubiquinol oxidase subunit II
1725	 37.96	0	2028327..2028434	+	35	209695359	-	VSAL_I1892	-	hypothetical protein
1726	 35.97	-1	2028427..2028729	+	100	209695360	-	VSAL_I1893	-	membrane protein
1727	 36.54	0	2028919..2029323	+	134	209695361	ybgC	VSAL_I1894	-	acyl-CoA thioester hydrolase
1728	 39.30	0	2029313..2029999	+	228	209695362	tolQ	VSAL_I1895	-	TolQ protein, inner membrane component
1729	 40.04	0	2029999..2030445	+	148	209695363	tolR	VSAL_I1896	-	TolR protein, membrane component
1730	 40.18	0	2030462..2031469	+	335	209695364	tolA	VSAL_I1897	-	TolA protein, membrane component
1731	 39.39	0	2031480..2032832	+	450	209695365	tolB	VSAL_I1898	-	TolB protein precursor, periplasmic component
1732	 42.47	0	2032865..2033422	+	185	209695366	pal	VSAL_I1899	-	peptidoglycan-associated lipoprotein precursor
1733	 41.18	0	2033447..2034211	+	254	209695367	-	VSAL_I1900	-	hypothetical protein
1734	 40.67	0	2034338..2035387	+	349	209695368	nadA	VSAL_I1901	-	quinolinate synthetase A
1735	 33.12	-2	2035463..2035921	-	152	209695369	-	VSAL_I1902	-	hypothetical protein
1736	 35.81	-1	2036033..2037040	-	335	209695370	-	VSAL_I1903	-	HTH-type transcriptional regulator, AraC family
1737	 40.29	0	2037316..2038437	+	373	209695371	-	VSAL_I1904	-	secretion protein, HlyD family
1738	 35.20	-1	2038427..2039446	+	339	209695372	-	VSAL_I1905	-	membrane protein
1739	 39.92	0	2039473..2040534	+	353	209695373	-	VSAL_I1906	-	membrane protein
1740	 33.63	-1	2040537..2041199	+	220	209695374	-	VSAL_I1907	-	putative ion channel
1741	 40.13	0	2041652..2042254	-	200	209695375	-	VSAL_I1908	-	hypothetical protein
1742	 39.14	0	2042634..2043029	+	131	209695376	-	VSAL_I1909	-	membrane protein
1743	 35.70	-1	2045374..2045796	+	140	209695377	-	VSAL_I1911	-	transposase
1744	 34.04	-1	2045814..2046380	+	188	209695378	-	VSAL_I1912	-	transposase
1745	 37.12	0	2047052..2047447	+	131	209695379	-	VSAL_I1913	-	hypothetical protein
1746	 40.68	0	2047714..2049075	+	453	209695380	-	VSAL_I1914	-	putative GTP-binding protein
1747	 38.97	0	2049181..2049606	+	141	209695381	-	VSAL_I1915	-	putative acetyltransferase
1748	 38.94	0	2049660..2050640	-	326	209695382	-	VSAL_I1916	-	putative alcohol dehydrogenase
1749	 43.71	+1	2050803..2051120	-	105	209695383	-	VSAL_I1917	-	hypothetical protein
1750	 40.31	0	2051215..2052375	-	386	209695384	-	VSAL_I1918	-	MFS transporter
1751	 36.15	-1	2052717..2053427	+	236	209695385	-	VSAL_I1919	-	membrane protein
1752	 38.60	0	2053473..2054327	-	284	209695386	-	VSAL_I1920	-	inner membrane protein
1753	 32.61	-2	2055011..2055976	-	321	209695387	-	VSAL_I1921	-	putative membrane protein, putative phage gene
1754	 27.18	-2	2056403..2058628	-	741	209695388	-	VSAL_I1922	-	hypothetical protein, putative phage gene
1755	 34.62	-1	2059548..2060168	-	206	209695389	-	VSAL_I1924	-	hypothetical protein, putative phage gene
1756	 28.87	-2	2060173..2060799	-	208	209695390	ibrB	VSAL_I1925	-	immunoglobulin-binding regulator
1757	 37.78	0	2063208..2063522	+	104	209695391	-	VSAL_I1928	-	transposase
1758	 36.21	-1	2063519..2063866	+	115	209695392	-	VSAL_I1929	-	transposase
1759	 39.92	0	2063938..2065425	+	495	209695393	-	VSAL_I1930	-	transposase
1760	 40.40	0	2065558..2066307	-	249	209695394	moeB	VSAL_I1931	-	molybdopterin biosynthesis protein MoeB
1761	 42.09	0	2066319..2067563	-	414	209695395	moeA	VSAL_I1932	-	molybdopterin biosynthesis protein MoeA
1762	 40.98	0	2067717..2068370	+	217	209695396	folE	VSAL_I1933	-	GTP cyclohydrolase I
1763	 39.38	0	2068438..2069892	-	484	209695397	cls	VSAL_I1934	-	cardiolipin synthetase
1764	 39.35	0	2070168..2071514	+	448	209695398	-	VSAL_I1935	-	sodium-dependent transporter
1765	 34.84	-1	2071607..2072005	-	132	209695399	-	VSAL_I1936	-	hypothetical protein
1766	 37.32	0	2072018..2073220	-	400	209695400	-	VSAL_I1937	-	putative signaling protein
1767	 36.09	-1	2073336..2074061	-	241	209695401	lpxH	VSAL_I1938	-	UDP-2,3-diacylglucosamine hydrolase
1768	 39.76	0	2074118..2074615	-	165	209695402	ppiB	VSAL_I1939	-	peptidyl-prolyl cis-trans isomerase B
1769	 40.10	0	2074764..2076152	+	462	209695403	cysS	VSAL_I1940	-	cysteinyl-tRNA synthetase
1770	 37.65	0	2076233..2076811	+	192	209695404	tdk	VSAL_I1941	-	thymidine kinase
1771	 37.78	0	2077364..2077678	+	104	209695405	-	VSAL_I1943	-	transposase
1772	 36.21	-1	2077675..2078022	+	115	209695406	-	VSAL_I1944	-	transposase
1773	 40.00	0	2082386..2084050	+	554	209695407	oppA	VSAL_I1946	-	oligopeptide transport system permease protein B
1774	 41.86	0	2085095..2085997	+	300	209695408	oppC	VSAL_I1948	-	oligopeptide transport system permease protein C
1775	 40.58	0	2086048..2087013	+	321	209695409	oppD	VSAL_I1949	-	oligopeptide transport ATP-binding protein D
1776	 40.68	0	2087013..2088005	+	330	209695410	oppF	VSAL_I1950	-	oligopeptide transport ATP-binding protein F
1777	 38.51	0	2088186..2090348	+	720	209695411	-	VSAL_I1951	-	methyl-accepting chemotaxis protein
1778	 39.90	0	2090451..2091623	-	390	209695412	-	VSAL_I1952	-	hypothetical protein
1779	 39.97	0	2091688..2092425	-	245	209695413	pflA	VSAL_I1953	-	pyruvate formate-lyase 1 activating enzyme
1780	 39.14	0	2092573..2093898	-	441	209695414	-	VSAL_I1954	-	transposase
1781	 43.35	+1	2094014..2096290	-	758	209695415	pflB	VSAL_I1955	-	formate acetyltransferase 1
1782	 37.98	0	2096688..2097548	-	286	209695416	-	VSAL_I1956	-	putative formate transporter 1
1783	 40.86	0	2098078..2098848	+	256	209695417	aotP	VSAL_I1957	-	arginine/ornithine periplasmic binding protein-dependent transporter, ATP-binding component
1784	 39.38	0	2098933..2099709	+	258	209695418	aotJ	VSAL_I1958	-	arginine/ornithine periplasmic binding protein-dependent transporter
1785	 41.03	0	2099799..2100539	+	246	209695419	aotQ	VSAL_I1959	-	arginine/ornithine periplasmic binding protein-dependent transporter, inner membrane component
1786	 39.23	0	2100542..2101219	+	225	209695420	aotM	VSAL_I1960	-	arginine/ornithine periplasmic binding protein-dependent transporter, inner membrane component
1787	 37.48	0	2101503..2102153	-	216	209695421	grxB	VSAL_I1961	-	glutaredoxin 2
1788	 39.16	0	2102307..2103113	-	268	209695422	xthA	VSAL_I1962	-	exodeoxyribonuclease III
1789	 37.51	0	2104217..2105389	+	390	209695423	-	VSAL_I1963	-	putative secretion protein, HlyD family
1790	 37.13	0	2108585..2109268	-	227	209695424	-	VSAL_I1965	-	hypothetical protein
1791	 42.35	0	2109374..2110438	-	354	209695425	-	VSAL_I1966	-	putative pyridoxal-phosphate dependent enzyme
1792	 36.97	0	2110558..2111025	+	155	209695426	-	VSAL_I1967	-	HTH-type transcriptional regulator, AsnC family
1793	 42.82	+1	2111094..2111957	-	287	209695427	tesB	VSAL_I1968	-	acyl-CoA thioesterase II
39.44	MEAN

3.11	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.