version 1.0
Aliivibrio salmonicida LFI1238 chromosome 1, complete genome - 1..3325165 2820 proteins Pos %G+C SD Location Strand Length PID Gene Synonym Code Product 1691 44.10 +1 1993731..1994315 - 194 209695325 sodB VSAL_I1858 - superoxide dismutase [Fe] 1692 39.88 0 1994551..1994886 + 111 209695326 - VSAL_I1859 - putative glutaredoxin 1693 38.65 0 1994990..1996288 - 432 209695327 - VSAL_I1860 - putative response regulator 1694 41.69 0 1996459..1997787 - 442 209695328 - VSAL_I1861 - sodium/proton antiporter 1695 40.39 0 1997835..1998500 - 221 209695329 rnt VSAL_I1862 - ribonuclease T 1696 38.57 0 1998701..1999579 + 292 209695330 motY VSAL_I1863 - sodium-type flagellar protein MotY precursor 1697 37.47 0 1999618..2000052 - 144 209695331 - VSAL_I1864 - putative outer membrane protein 1698 41.49 0 2000172..2000588 - 138 209695332 gloA VSAL_I1865 - lactoylglutathione lyase 1699 39.62 0 2000625..2001260 - 211 209695333 nth VSAL_I1866 - endonuclease III 1700 40.17 0 2001278..2001964 - 228 209695334 rnfE VSAL_I1867 - electron transport complex protein RnfE 1701 41.07 0 2001964..2002596 - 210 209695335 rnfG VSAL_I1868 - electron transport complex protein RnfG 1702 40.53 0 2002600..2003655 - 351 209695336 rnfD VSAL_I1869 - electron transport complex protein RnfD 1703 42.58 +1 2003658..2005808 - 716 209695337 rnfC VSAL_I1870 - electron transport complex protein RnfC 1704 40.85 0 2005812..2006396 - 194 209695338 rnfB VSAL_I1871 - electron transport complex protein RnfB 1705 39.18 0 2006399..2006980 - 193 209695339 rnfA VSAL_I1872 - electron transport complex protein RnfA 1706 39.00 0 2007661..2009691 + 676 209695340 uvrB VSAL_I1873 - UvrABS system protein B (excinuclease ABC subunit B) 1707 39.93 0 2010023..2011432 + 469 209695341 luxO VSAL_I1874 - two component signal response regulator LuxO 1708 36.04 -1 2011444..2011776 + 110 209695342 luxU VSAL_I1875 - phosphorelay protein LuxU 1709 40.96 0 2011826..2012704 - 292 209695343 - VSAL_I1876 - hypothetical protein 1710 39.39 0 2013073..2014062 + 329 209695344 moaA VSAL_I1877 - molybdenum cofactor biosynthesis protein A 1711 40.00 0 2014075..2014554 + 159 209695345 moaC VSAL_I1878 - molybdenum cofactor biosynthesis protein C 1712 40.65 0 2014551..2014796 + 81 209695346 moaD VSAL_I1879 - molybdopterin-converting factor subunit 1 1713 42.06 0 2014798..2015244 + 148 209695347 moaE VSAL_I1880 - molybdopterin-converting factor subunit 2 1714 41.20 0 2015333..2016298 - 321 209695348 - VSAL_I1881 - hypothetical protein 1715 40.56 0 2016302..2017810 - 502 209695349 - VSAL_I1882 - membrane protein 1716 39.17 0 2017913..2018683 - 256 209695350 - VSAL_I1883 - putative lipoprotein 1717 41.03 0 2018763..2019737 - 324 209695351 - VSAL_I1884 - putative methyltransferase 1718 39.64 0 2019787..2020515 - 242 209695352 - VSAL_I1885 - putative methyltransferase 1719 42.85 +1 2021027..2022802 + 591 209695353 aspS VSAL_I1886 - aspartyl-tRNA synthetase 1720 43.87 +1 2022901..2023422 + 173 209695354 ruvC VSAL_I1887 - crossover junction endodeoxyribonuclease RuvC 1721 40.26 0 2023519..2024139 + 206 209695355 ruvA VSAL_I1888 - holliday junction ATP-dependent DNA helicase RuvA 1722 41.22 0 2024185..2025198 + 337 209695356 ruvB VSAL_I1889 - holliday junction ATP-dependent DNA helicase RuvB 1723 40.38 0 2025572..2027161 + 529 209695357 cydA VSAL_I1890 - cytochrome d ubiquinol oxidase subunit I 1724 39.40 0 2027179..2028315 + 378 209695358 cydB VSAL_I1891 - cytochrome d ubiquinol oxidase subunit II 1725 37.96 0 2028327..2028434 + 35 209695359 - VSAL_I1892 - hypothetical protein 1726 35.97 -1 2028427..2028729 + 100 209695360 - VSAL_I1893 - membrane protein 1727 36.54 0 2028919..2029323 + 134 209695361 ybgC VSAL_I1894 - acyl-CoA thioester hydrolase 1728 39.30 0 2029313..2029999 + 228 209695362 tolQ VSAL_I1895 - TolQ protein, inner membrane component 1729 40.04 0 2029999..2030445 + 148 209695363 tolR VSAL_I1896 - TolR protein, membrane component 1730 40.18 0 2030462..2031469 + 335 209695364 tolA VSAL_I1897 - TolA protein, membrane component 1731 39.39 0 2031480..2032832 + 450 209695365 tolB VSAL_I1898 - TolB protein precursor, periplasmic component 1732 42.47 0 2032865..2033422 + 185 209695366 pal VSAL_I1899 - peptidoglycan-associated lipoprotein precursor 1733 41.18 0 2033447..2034211 + 254 209695367 - VSAL_I1900 - hypothetical protein 1734 40.67 0 2034338..2035387 + 349 209695368 nadA VSAL_I1901 - quinolinate synthetase A 1735 33.12 -2 2035463..2035921 - 152 209695369 - VSAL_I1902 - hypothetical protein 1736 35.81 -1 2036033..2037040 - 335 209695370 - VSAL_I1903 - HTH-type transcriptional regulator, AraC family 1737 40.29 0 2037316..2038437 + 373 209695371 - VSAL_I1904 - secretion protein, HlyD family 1738 35.20 -1 2038427..2039446 + 339 209695372 - VSAL_I1905 - membrane protein 1739 39.92 0 2039473..2040534 + 353 209695373 - VSAL_I1906 - membrane protein 1740 33.63 -1 2040537..2041199 + 220 209695374 - VSAL_I1907 - putative ion channel 1741 40.13 0 2041652..2042254 - 200 209695375 - VSAL_I1908 - hypothetical protein 1742 39.14 0 2042634..2043029 + 131 209695376 - VSAL_I1909 - membrane protein 1743 35.70 -1 2045374..2045796 + 140 209695377 - VSAL_I1911 - transposase 1744 34.04 -1 2045814..2046380 + 188 209695378 - VSAL_I1912 - transposase 1745 37.12 0 2047052..2047447 + 131 209695379 - VSAL_I1913 - hypothetical protein 1746 40.68 0 2047714..2049075 + 453 209695380 - VSAL_I1914 - putative GTP-binding protein 1747 38.97 0 2049181..2049606 + 141 209695381 - VSAL_I1915 - putative acetyltransferase 1748 38.94 0 2049660..2050640 - 326 209695382 - VSAL_I1916 - putative alcohol dehydrogenase 1749 43.71 +1 2050803..2051120 - 105 209695383 - VSAL_I1917 - hypothetical protein 1750 40.31 0 2051215..2052375 - 386 209695384 - VSAL_I1918 - MFS transporter 1751 36.15 -1 2052717..2053427 + 236 209695385 - VSAL_I1919 - membrane protein 1752 38.60 0 2053473..2054327 - 284 209695386 - VSAL_I1920 - inner membrane protein 1753 32.61 -2 2055011..2055976 - 321 209695387 - VSAL_I1921 - putative membrane protein, putative phage gene 1754 27.18 -2 2056403..2058628 - 741 209695388 - VSAL_I1922 - hypothetical protein, putative phage gene 1755 34.62 -1 2059548..2060168 - 206 209695389 - VSAL_I1924 - hypothetical protein, putative phage gene 1756 28.87 -2 2060173..2060799 - 208 209695390 ibrB VSAL_I1925 - immunoglobulin-binding regulator 1757 37.78 0 2063208..2063522 + 104 209695391 - VSAL_I1928 - transposase 1758 36.21 -1 2063519..2063866 + 115 209695392 - VSAL_I1929 - transposase 1759 39.92 0 2063938..2065425 + 495 209695393 - VSAL_I1930 - transposase 1760 40.40 0 2065558..2066307 - 249 209695394 moeB VSAL_I1931 - molybdopterin biosynthesis protein MoeB 1761 42.09 0 2066319..2067563 - 414 209695395 moeA VSAL_I1932 - molybdopterin biosynthesis protein MoeA 1762 40.98 0 2067717..2068370 + 217 209695396 folE VSAL_I1933 - GTP cyclohydrolase I 1763 39.38 0 2068438..2069892 - 484 209695397 cls VSAL_I1934 - cardiolipin synthetase 1764 39.35 0 2070168..2071514 + 448 209695398 - VSAL_I1935 - sodium-dependent transporter 1765 34.84 -1 2071607..2072005 - 132 209695399 - VSAL_I1936 - hypothetical protein 1766 37.32 0 2072018..2073220 - 400 209695400 - VSAL_I1937 - putative signaling protein 1767 36.09 -1 2073336..2074061 - 241 209695401 lpxH VSAL_I1938 - UDP-2,3-diacylglucosamine hydrolase 1768 39.76 0 2074118..2074615 - 165 209695402 ppiB VSAL_I1939 - peptidyl-prolyl cis-trans isomerase B 1769 40.10 0 2074764..2076152 + 462 209695403 cysS VSAL_I1940 - cysteinyl-tRNA synthetase 1770 37.65 0 2076233..2076811 + 192 209695404 tdk VSAL_I1941 - thymidine kinase 1771 37.78 0 2077364..2077678 + 104 209695405 - VSAL_I1943 - transposase 1772 36.21 -1 2077675..2078022 + 115 209695406 - VSAL_I1944 - transposase 1773 40.00 0 2082386..2084050 + 554 209695407 oppA VSAL_I1946 - oligopeptide transport system permease protein B 1774 41.86 0 2085095..2085997 + 300 209695408 oppC VSAL_I1948 - oligopeptide transport system permease protein C 1775 40.58 0 2086048..2087013 + 321 209695409 oppD VSAL_I1949 - oligopeptide transport ATP-binding protein D 1776 40.68 0 2087013..2088005 + 330 209695410 oppF VSAL_I1950 - oligopeptide transport ATP-binding protein F 1777 38.51 0 2088186..2090348 + 720 209695411 - VSAL_I1951 - methyl-accepting chemotaxis protein 1778 39.90 0 2090451..2091623 - 390 209695412 - VSAL_I1952 - hypothetical protein 1779 39.97 0 2091688..2092425 - 245 209695413 pflA VSAL_I1953 - pyruvate formate-lyase 1 activating enzyme 1780 39.14 0 2092573..2093898 - 441 209695414 - VSAL_I1954 - transposase 1781 43.35 +1 2094014..2096290 - 758 209695415 pflB VSAL_I1955 - formate acetyltransferase 1 1782 37.98 0 2096688..2097548 - 286 209695416 - VSAL_I1956 - putative formate transporter 1 1783 40.86 0 2098078..2098848 + 256 209695417 aotP VSAL_I1957 - arginine/ornithine periplasmic binding protein-dependent transporter, ATP-binding component 1784 39.38 0 2098933..2099709 + 258 209695418 aotJ VSAL_I1958 - arginine/ornithine periplasmic binding protein-dependent transporter 1785 41.03 0 2099799..2100539 + 246 209695419 aotQ VSAL_I1959 - arginine/ornithine periplasmic binding protein-dependent transporter, inner membrane component 1786 39.23 0 2100542..2101219 + 225 209695420 aotM VSAL_I1960 - arginine/ornithine periplasmic binding protein-dependent transporter, inner membrane component 1787 37.48 0 2101503..2102153 - 216 209695421 grxB VSAL_I1961 - glutaredoxin 2 1788 39.16 0 2102307..2103113 - 268 209695422 xthA VSAL_I1962 - exodeoxyribonuclease III 1789 37.51 0 2104217..2105389 + 390 209695423 - VSAL_I1963 - putative secretion protein, HlyD family 1790 37.13 0 2108585..2109268 - 227 209695424 - VSAL_I1965 - hypothetical protein 39.44 MEAN 3.11 STD DEV
Last Updated: Dec 04, 2008
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.
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