version 1.0
Aliivibrio salmonicida LFI1238 chromosome 1, complete genome - 1..3325165 2820 proteins Pos %G+C SD Location Strand Length PID Gene Synonym Code Product 1229 41.61 0 1444489..1445733 + 414 209694863 sbcD VSAL_I1332 - nuclease sbcCD subunit D 1230 39.85 0 1445730..1449410 + 1226 209694864 sbcC VSAL_I1333 - nuclease sbcCD subunit C 1231 39.71 0 1449467..1449952 + 161 209694865 - VSAL_I1334 - putative thioesterase 1232 40.54 0 1450389..1451582 - 397 209694866 - VSAL_I1335 - transposase 1233 39.83 0 1452557..1453711 + 384 209694867 - VSAL_I1337 - tyrosine-specific transport protein (tyrosine permease) 1234 35.94 -1 1455044..1455925 + 293 209694868 - VSAL_I1339 - transposase 1235 38.61 0 1456036..1456395 + 119 209694869 - VSAL_I1340 - putative lipoprotein 1236 39.44 0 1456444..1456803 + 119 209694870 - VSAL_I1341 - putative lipoprotein 1237 39.59 0 1456867..1457409 - 180 209694871 - VSAL_I1342 - hypothetical protein 1238 42.88 +1 1457621..1458982 - 453 209694872 sdaA VSAL_I1343 - L-serine dehydratase 1 1239 42.05 0 1459080..1460330 - 416 209694873 sdaC VSAL_I1344 - serine transporter 1240 37.27 0 1460522..1461130 - 202 209694874 - VSAL_I1345 - NUDIX hydrolase 1241 39.97 0 1461130..1462500 - 456 209694875 pabB VSAL_I1346 - para-aminobenzoate synthase component I 1242 45.11 +1 1462671..1464215 + 514 209694876 - VSAL_I1347 - fumarate hydratase class I 1243 35.94 -1 1464260..1465141 - 293 209694877 - VSAL_I1348 - transposase 1244 39.14 0 1465291..1466616 - 441 209694878 - VSAL_I1349 - transposase 1245 34.44 -1 1466801..1467163 + 120 209694879 - VSAL_I1350 - putative lipoprotein 1246 40.88 0 1467216..1468289 + 357 209694880 - VSAL_I1351 - putative multidrug resistance protein precursor 1247 40.28 0 1468292..1469371 + 359 209694881 - VSAL_I1352 - organic solvent efflux pump precursor (periplasmic linker protein component) 1248 42.50 0 1469371..1472448 + 1025 209694882 - VSAL_I1353 - putative multi-drug efflux protein 1249 39.79 0 1472721..1473107 + 128 209694883 - VSAL_I1354 - hypothetical protein 1250 44.08 +1 1473236..1474426 - 396 209694884 metC VSAL_I1355 - cystathionine beta-lyase 1251 40.74 0 1474582..1474932 + 116 209694885 - VSAL_I1356 - hypothetical protein 1252 43.55 +1 1475219..1475737 + 172 209694886 hpc VSAL_I1357 - secreted protein Hcp-2 (haemolysin co-regulated protein) 1253 43.31 +1 1475814..1478078 + 754 209694887 - VSAL_I1358 - VgrG preotein, VgrG-2 1254 39.73 0 1478060..1478653 + 197 209694888 - VSAL_I1359 - hypothetical protein 1255 36.21 -1 1482240..1482587 - 115 209694889 - VSAL_I1362 - transposase 1256 37.78 0 1482584..1482898 - 104 209694890 - VSAL_I1363 - transposase 1257 41.23 0 1482981..1485653 - 890 209694891 - VSAL_I1364 - putative exported nuclease 1258 35.94 -1 1485914..1486795 - 293 209694892 - VSAL_I1365 - transposase 1259 40.94 0 1487015..1487869 + 284 209694893 - VSAL_I1366 - ATP-dependent DNA ligase 1260 41.32 0 1487925..1488926 - 333 209694894 rbsR VSAL_I1367 - ribose operon repressor 1261 45.32 +1 1489002..1489919 - 305 209694895 rbsK VSAL_I1368 - ribokinase 1262 45.16 +1 1490100..1490978 - 292 209694896 rbsB VSAL_I1369 - D-ribose-binding periplasmic protein precursor RbsB 1263 43.62 +1 1491115..1492086 - 323 209694897 rbsC VSAL_I1370 - ribose transport system permease protein RbsC 1264 41.06 0 1492098..1493612 - 504 209694898 rbsA VSAL_I1371 - ribose transport ATP-binding protein RbsA 1265 38.57 0 1493673..1494092 - 139 209694899 rbsD VSAL_I1372 - high affinity ribose transport protein RbsD 1266 40.74 0 1494476..1494637 + 53 209694900 - VSAL_I1373 - hypothetical protein 1267 40.18 0 1494709..1495161 + 150 209694901 - VSAL_I1374 - membrane protein 1268 33.74 -1 1495390..1495632 + 80 209694902 - VSAL_I1375 - membrane protein 1269 34.72 -1 1495877..1496020 + 47 209694903 - VSAL_I1376 - hypothetical protein, putative gene remnant 1270 36.89 0 1496286..1496651 + 121 209694904 - VSAL_I1377 - putative lipoprotein 1271 34.04 -1 1496780..1497346 - 188 209694905 - VSAL_I1378 - transposase 1272 35.70 -1 1497364..1497786 - 140 209694906 - VSAL_I1379 - transposase 1273 35.28 -1 1498417..1499034 + 205 209694907 - VSAL_I1381 - putative lipoprotein 1274 42.37 0 1499112..1500494 - 460 209694908 norM VSAL_I1382 - multidrug resistance protein NorM (sodium/drug antiporter) 1275 37.91 0 1500753..1501364 + 203 209694909 ribE VSAL_I1383 - riboflavin synthase alpha chain 1276 36.76 0 1501380..1501583 - 67 209694910 - VSAL_I1384 - hypothetical protein 1277 38.41 0 1501813..1502679 - 288 209694911 - VSAL_I1385 - hypothetical protein 1278 38.10 0 1502924..1503259 + 111 209694912 - VSAL_I1386 - hypothetical protein 1279 38.24 0 1503335..1503823 - 162 209694913 - VSAL_I1387 - putative lipoprotein 1280 43.06 +1 1504126..1505718 + 530 209694914 - VSAL_I1388 - putative ion transporter 1281 37.25 0 1505861..1506550 + 229 209694915 rsuA VSAL_I1389 - ribosomal small subunit pseudouridine synthase A 1282 37.56 0 1506586..1507389 - 267 209694916 - VSAL_I1390 - membrane protein 1283 38.17 0 1507476..1508219 + 247 209694917 - VSAL_I1391 - hypothetical protein 1284 40.92 0 1508346..1509254 + 302 209694918 - VSAL_I1392 - putative outer membrane protein 1285 37.84 0 1509379..1509711 - 110 209694919 - VSAL_I1393 - hypothetical protein 1286 34.15 -1 1510487..1512079 + 530 209694920 - VSAL_I1394 - hypothetical protein 1287 33.33 -1 1512083..1512886 + 267 209694921 - VSAL_I1395 - membrane protein 1288 38.53 0 1513088..1513318 + 76 209694922 - VSAL_I1396 - putative DNA-damage-inducible protein I (DinI) 1289 41.19 0 1513835..1515616 - 593 209694923 moeA VSAL_I1397 - molybdopterin biosynthesis protein MoeA 1290 39.66 0 1515613..1516197 - 194 209694924 mobA VSAL_I1398 - molybdopterin-guanine dinucleotide biosynthesis protein A 1291 41.19 0 1516209..1516883 - 224 209694925 - VSAL_I1399 - ABC transporter, ATP-binding protein 1292 40.63 0 1517596..1518417 - 273 209694926 tupA VSAL_I1401 - extracellular tungstate binding protein precursor 1293 39.15 0 1520143..1522170 + 675 209694927 - VSAL_I1403 - signal transduction protein, histidine kinase 1294 35.07 -1 1522197..1522598 + 133 209694928 - VSAL_I1404 - hypothetical protein 1295 36.07 -1 1522687..1522869 - 60 209694929 - VSAL_I1405 - hypothetical protein 1296 37.04 0 1523086..1523517 + 143 209694930 - VSAL_I1406 - membrane protein 1297 37.57 0 1523869..1524600 + 243 209694931 - VSAL_I1407 - putative glycosyl transferase 1298 37.31 0 1524623..1525201 + 192 209694932 - VSAL_I1408 - membrane protein 1299 35.83 -1 1526495..1527376 - 293 209694933 - VSAL_I1410 - transposase 1300 38.56 0 1528352..1528810 + 152 209694934 - VSAL_I1411 - hypothetical protein 1301 38.64 0 1528916..1529311 + 131 209694935 - VSAL_I1412 - hypothetical protein 1302 35.79 -1 1529362..1529850 + 162 209694936 - VSAL_I1413 - hypothetical protein 1303 37.78 0 1530171..1530485 + 104 209694937 - VSAL_I1415 - transposase 1304 36.21 -1 1530482..1530829 + 115 209694938 - VSAL_I1416 - transposase 1305 39.85 0 1530901..1532388 + 495 209694939 - VSAL_I1417 - transposase 1306 38.48 0 1534103..1534549 + 148 209694940 - VSAL_I1418 - putative acetyltransferase 1307 38.57 0 1534590..1535009 + 139 209694941 - VSAL_I1419 - putative acetyltransferase 1308 37.52 0 1535018..1535806 + 262 209694942 - VSAL_I1420 - hypothetical protein 1309 39.59 0 1535830..1536660 + 276 209694943 - VSAL_I1421 - sulfurtransferase (rhodanese-like protein) 1310 32.88 -2 1536688..1536906 + 72 209694944 - VSAL_I1422 - hypothetical protein 1311 35.64 -1 1537500..1537976 + 158 209694945 - VSAL_I1424 - putative acetyltransferase 1312 34.04 -1 1538051..1538617 - 188 209694946 - VSAL_I1425 - transposase 1313 35.70 -1 1538635..1539057 - 140 209694947 - VSAL_I1426 - transposase 1314 31.67 -2 1539188..1539427 - 79 209694948 - VSAL_I1427 - hypothetical protein 1315 39.26 0 1540076..1540750 - 224 209694949 - VSAL_I1428 - hypothetical protein 1316 40.54 0 1541787..1542980 - 397 209694950 - VSAL_I1430 - transposase 1317 36.91 0 1544754..1545284 + 176 209694951 - VSAL_I1431 - putative acetyltransferase 1318 38.46 0 1545349..1545699 + 116 209694952 - VSAL_I1432 - hypothetical protein 1319 40.39 0 1546052..1548943 + 963 209694953 - VSAL_I1433 - hypothetical protein 1320 43.13 +1 1550006..1550791 + 261 209694954 - VSAL_I1435 - hypothetical protein 1321 44.67 +1 1550854..1551594 + 246 209694955 - VSAL_I1436 - hypothetical protein 1322 42.08 0 1551597..1552316 + 239 209694956 - VSAL_I1437 - putative allophanate hydrolase subunit 1 1323 43.78 +1 1552313..1553269 + 318 209694957 - VSAL_I1438 - putative allophanate hydrolase subunit 2 1324 37.78 0 1553364..1553678 + 104 209694958 - VSAL_I1439 - transposase 1325 35.94 -1 1553950..1554831 - 293 209694959 - VSAL_I1441 - transposase 1326 39.65 0 1555101..1556588 + 495 209694960 - VSAL_I1442 - transposase 1327 43.64 +1 1556716..1557957 + 413 209694961 - VSAL_I1443 - putative transmembrane transport protein 1328 40.70 0 1558822..1560015 - 397 209694962 - VSAL_I1445 - transposase 39.44 MEAN 3.11 STD DEV
Last Updated: Dec 04, 2008
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.
version
1.0