IslandPathversion 1.0

IslandPath Analysis: Alteromonas macleodii 'Deep ecotype'



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 44.90 STD DEV: 3.40
Alteromonas macleodii 'Deep ecotype', complete genome - 1..4412282
4072 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
2448	 47.07	0	2686239..2686784	+	181	196157273	-	MADE_02472	-	hypothetical protein
2449	 43.17	0	2686826..2688238	+	470	196157274	-	MADE_02473	-	O-antigen polymerase
2450	 43.24	0	2688272..2688685	+	137	196157275	-	MADE_02474	-	hypothetical protein
2451	 38.89	-1	2688682..2689437	-	251	196157276	-	MADE_02475	-	hypothetical protein
2452	 43.65	0	2689430..2690098	-	222	196157277	-	MADE_02476	-	capsular polysaccharide biosynthesis protein, putative
2453	 42.58	0	2690180..2692396	-	738	196157278	-	MADE_02477	-	putative Exopolysaccharide biosynthesis protein
2454	 46.54	0	2692423..2692884	-	153	196157279	-	MADE_02478	-	Periplasmic protein involved in polysaccharide export
2455	 43.79	0	2692968..2694143	-	391	196157280	-	MADE_02479	-	hypothetical protein
2456	 41.51	0	2694853..2696307	+	484	196157281	-	MADE_02480	-	Sugar transferase involved in lipopolysaccharide synthesis
2457	 43.40	0	2696337..2697746	+	469	196157282	-	MADE_02481	-	mannose-1-phosphate guanylyltransferase
2458	 47.62	0	2697881..2698237	-	118	196157283	-	MADE_02482	-	50S ribosomal protein L20
2459	 43.43	0	2698256..2698453	-	65	196157284	-	MADE_02483	-	ribosomal protein L35
2460	 47.13	0	2698572..2699006	-	144	196157285	-	MADE_02484	-	Translation initiation factor 3
2461	 46.17	0	2699220..2701136	-	638	196157286	-	MADE_02485	-	threonyl-tRNA synthetase
2462	 46.10	0	2701596..2702480	+	294	196157287	-	MADE_02486	-	hypothetical protein
2463	 48.80	+1	2702532..2703281	+	249	196157288	-	MADE_02487	-	pteridine reductase
2464	 47.47	0	2703326..2704351	+	341	196157289	-	MADE_02488	-	hypothetical protein
2465	 47.37	0	2704358..2705461	-	367	196157290	-	MADE_02489	-	putative mechanosensitive channel protein (MscS family)
2466	 43.06	0	2705567..2706193	-	208	196157291	-	MADE_02490	-	Abortive infection protein
2467	 46.83	0	2706590..2707441	+	283	196157292	-	MADE_02491	-	putative rpiR-family transcriptional regulatory protein
2468	 46.59	0	2707616..2708158	+	180	196157293	-	MADE_02492	-	hypothetical protein
2469	 38.51	-1	2708190..2708363	+	57	196157294	-	MADE_02493	-	hypothetical protein
2470	 48.19	0	2708406..2709677	+	423	196157295	-	MADE_02494	-	amidase
2471	 50.57	+1	2709797..2711374	+	525	196157296	-	MADE_02495	-	gamma-glutamyltranspeptidase, putative
2472	 48.72	+1	2711445..2712263	+	272	196157297	-	MADE_02496	-	hypothetical protein
2473	 50.12	+1	2712274..2713554	+	426	196157298	-	MADE_02497	-	aminotransferase, class V
2474	 48.62	+1	2713547..2714782	+	411	196157299	-	MADE_02498	-	N-carbamoyl-L-amino acid amidohydrolase
2475	 48.91	+1	2714901..2715266	+	121	196157300	-	MADE_02499	-	hypothetical protein
2476	 36.75	-2	2715299..2715415	-	38	196157301	-	MADE_02500	-	hypothetical protein
2477	 46.33	0	2715775..2717328	+	517	196157302	-	MADE_02501	-	xanthine/uracil permease family protein
2478	 45.84	0	2717572..2720001	+	809	196157303	-	MADE_02502	-	TonB-dependent receptor
2479	 44.25	0	2720223..2720396	+	57	196157304	-	MADE_02503	-	hypothetical protein
2480	 44.61	0	2720431..2722434	-	667	196157305	-	MADE_02504	-	Signal transduction histidine kinase
2481	 44.19	0	2722596..2723516	-	306	196157306	-	MADE_02505	-	putative response regulator
2482	 42.92	0	2723715..2723933	-	72	196157307	-	MADE_02506	-	response regulator receiver modulated diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
2483	 40.40	-1	2723984..2724280	-	98	196157308	-	MADE_02507	-	response regulator
2484	 47.11	0	2724469..2724831	+	120	196157309	-	MADE_02508	-	probable sensor/response hybrid, putative
2485	 43.72	0	2724951..2725961	-	336	196157310	-	MADE_02509	-	adenosine deaminase
2486	 47.22	0	2726282..2727613	+	443	196157311	-	MADE_02510	-	Xanthine/uracil/vitamin C permease
2487	 43.56	0	2727750..2728052	-	100	196157312	-	MADE_02511	-	hypothetical protein
2488	 46.60	0	2728113..2728994	-	293	196157313	-	MADE_02512	-	hypothetical protein
2489	 47.13	0	2729026..2729670	-	214	196157314	-	MADE_02513	-	transcriptional regulator, TetR family protein
2490	 38.46	-1	2729827..2729943	+	38	196157315	-	MADE_02514	-	hypothetical protein
2491	 46.02	0	2730051..2731493	+	480	196157316	-	MADE_02515	-	putative xanthine dehydrogenase, XdhA subunit
2492	 49.01	+1	2731486..2733852	+	788	196157317	-	MADE_02516	-	xanthine dehydrogenase, molybdopterin binding subunit
2493	 49.68	+1	2733849..2734790	+	313	196157318	-	MADE_02517	-	Xanthine and CO dehydrogenase maturation factor, XdhC/CoxF family protein
2494	 46.52	0	2734864..2735280	+	138	196157319	-	MADE_02518	-	uricase-like protein
2495	 49.55	+1	2735327..2735659	+	110	196157320	-	MADE_02519	-	Transthyretin
2496	 46.56	0	2735665..2736972	+	435	196157321	-	MADE_02520	-	guanine deaminase
2497	 46.14	0	2737004..2738284	+	426	196157322	-	MADE_02521	-	predicted membrane protein
2498	 42.91	0	2738305..2739588	-	427	196157323	-	MADE_02522	-	putative diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with PAS/PAC sensor(s) and Response Regulator
2499	 44.17	0	2739819..2740178	-	119	196157324	-	MADE_02523	-	hypothetical transcriptional regulator
2500	 47.11	0	2740370..2740870	+	166	196157325	-	MADE_02524	-	putative aldehyde dehydrogenase subunit III
2501	 48.96	+1	2740867..2743164	+	765	196157326	-	MADE_02525	-	Membrane-bound aldehyde dehydrogenase, large subunit
2502	 44.24	0	2743339..2743833	-	164	196157327	-	MADE_02526	-	hypothetical protein
2503	 44.76	0	2744094..2744732	+	212	196157328	-	MADE_02527	-	putative NADPH-quinone reductase
2504	 46.81	0	2744770..2746668	+	632	196157329	-	MADE_02528	-	glutathione-regulated potassium-efflux system protein KefC
2505	 48.84	+1	2746837..2748048	+	403	196157330	-	MADE_02529	-	putative multidrug resistance protein (substrate binding lipoprotein)
2506	 47.70	0	2748052..2751099	+	1015	196157331	-	MADE_02530	-	acriflavin resistance protein ei VT8
2507	 44.91	0	2751431..2753365	+	644	196157332	-	MADE_02531	-	diguanylate cyclase/phosphodiesterase
2508	 49.25	+1	2753855..2754388	+	177	196157333	-	MADE_02532	-	hypothetical protein
2509	 43.21	0	2754348..2756069	-	573	196157334	-	MADE_02533	-	putative diguanylate cyclase/phosphodiesterase domain 2 (EAL)
2510	 42.84	0	2756428..2757468	+	346	196157335	-	MADE_02534	-	transcriptional factor
2511	 44.38	0	2757465..2758550	-	361	196157336	-	MADE_02535	-	putative cell division protein FtsZ
2512	 45.13	0	2759110..2760186	-	358	196157337	-	MADE_02536	-	hypothetical protein
2513	 48.07	0	2760346..2760759	-	137	196157338	-	MADE_02537	-	putative bacterial regulatory protein, MarR
2514	 35.06	-2	2760761..2760934	-	57	196157339	-	MADE_02538	-	hypothetical protein
2515	 47.55	0	2761057..2762421	+	454	196157340	-	MADE_02539	-	Homogentisate 1,2-dioxygenase
2516	 49.18	+1	2762533..2762898	+	121	196157341	-	MADE_02540	-	glyoxalase family protein
2517	 44.79	0	2763121..2764194	-	357	196157342	-	MADE_02541	-	4-hydroxyphenylpyruvate dioxygenase
2518	 49.02	+1	2764402..2764605	+	67	196157343	-	MADE_02542	-	hypothetical protein
2519	 41.38	-1	2764790..2765137	+	115	196157344	-	MADE_02543	-	arsenate reductase
2520	 49.43	+1	2765131..2766267	+	378	196157345	-	MADE_02544	-	succinyl-diaminopimelate desuccinylase
2521	 47.78	0	2766283..2766981	+	232	196157346	-	MADE_02545	-	D-alanyl-D-alanine carboxypeptidase
2522	 48.11	0	2767014..2767277	+	87	196157347	-	MADE_02546	-	hypothetical protein
2523	 47.45	0	2767428..2768681	+	417	196157348	-	MADE_02547	-	proton/glutamate symporter
2524	 44.65	0	2768810..2769136	-	108	196157349	-	MADE_02548	-	hypothetical protein
2525	 44.64	0	2769195..2769530	-	111	196157350	-	MADE_02549	-	putative HIT family hydrolase
2526	 45.50	0	2769598..2770641	-	347	196157351	-	MADE_02550	-	succinylglutamate desuccinylase
2527	 44.69	0	2770856..2772220	-	454	196157352	-	MADE_02551	-	sensory box/GGDEF domain/EAL domain protein
2528	 45.35	0	2772432..2774945	-	837	196157353	-	MADE_02552	-	putative maltodextrin phosphorylase
2529	 48.03	0	2775127..2776779	-	550	196157354	-	MADE_02553	-	phosphoglucomutase, alpha-D-glucose phosphate-specific
2530	 45.67	0	2776825..2777643	-	272	196157355	-	MADE_02554	-	SeqA protein
2531	 48.21	0	2777923..2778870	+	315	196157356	-	MADE_02555	-	MoxR protein
2532	 44.98	0	2778943..2780067	+	374	196157357	-	MADE_02556	-	hypothetical protein
2533	 47.04	0	2780064..2782127	+	687	196157358	-	MADE_02557	-	transglutaminase family protein
2534	 48.41	+1	2782722..2783570	+	282	196157359	-	MADE_02558	-	Formate/nitrite transporter
2535	 46.20	0	2783706..2785523	+	605	196157360	-	MADE_02559	-	Serine/threonine protein kinase
2536	 49.28	+1	2785554..2785829	+	91	196157361	-	MADE_02560	-	cyanate hydratase
2537	 41.07	-1	2786101..2786268	+	55	196157362	-	MADE_02561	-	cyanate hydratase
2538	 46.26	0	2786372..2788459	-	695	196157363	-	MADE_02562	-	elongation factor EF-2
2539	 44.99	0	2788643..2789740	-	365	196157364	-	MADE_02563	-	methyltransferase
2540	 45.77	0	2789733..2790158	-	141	196157365	-	MADE_02564	-	uncharacterized small membrane protein
2541	 47.17	0	2790190..2790861	-	223	196157366	-	MADE_02565	-	predicted hydrolase of the alpha/beta-hydrolase fold
2542	 48.06	0	2790873..2791775	-	300	196157367	-	MADE_02566	-	putative transcriptional regulator, LysR family protein
2543	 41.50	0	2791986..2792279	+	97	196157368	-	MADE_02567	-	hypothetical protein
2544	 47.49	0	2792341..2793195	-	284	196157369	-	MADE_02568	-	2-dehydro-3-deoxyphosphooctonate aldolase
2545	 43.48	0	2793216..2793560	-	114	196157370	-	MADE_02569	-	Invasion gene expression up-regulator, SirB
2546	 34.19	-2	2793660..2793776	+	38	196157371	-	MADE_02570	-	hypothetical protein
2547	 44.89	0	2793808..2795373	-	521	196157372	-	MADE_02571	-	response regulator
44.90	MEAN

3.40	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.