IslandPath Analysis: Agrobacterium tumefaciens str. C58



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 59.48   STD DEV: 3.31
Agrobacterium tumefaciens str. C58 chromosome linear, complete sequence - 1..2075577
1851 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
509	 56.63	0	566148..567014	-	288	159185780	ppiD	Atu3519	-	peptidyl-prolyl cis-trans isomerase
510	 60.87	0	567257..569965	+	902	159185781	secA	Atu3520	-	preprotein translocase subunit SecA
511	 60.18	0	570113..571006	+	297	15891418	-	Atu3521	-	permease
512	 58.60	0	571088..572290	+	400	159185782	-	Atu3522	-	glucans biosynthesis protein
513	 57.91	0	572347..573762	+	471	159185783	-	Atu3523	-	polysaccharide biosynthesis associated protein
514	 60.77	0	573771..575042	+	423	159186373	-	Atu8188	-	hypothetical protein
515	 61.54	0	575095..575757	-	220	15891414	-	Atu3525	-	hypothetical protein
516	 61.45	0	576261..577103	-	280	159185784	-	Atu3527	-	hypothetical protein
517	 60.51	0	577129..578118	-	329	15891412	-	Atu3528	-	oxidoreductase
518	 61.22	0	578115..579308	-	397	15891411	uxuA	Atu3529	-	mannonate dehydratase
519	 62.53	0	579312..580784	-	490	15891410	uxuB	Atu3530	-	mannitol dehydrogenase
520	 63.02	+1	580802..581542	-	246	15891409	fabG	Atu3531	-	3-oxoacyl-(acyl-carrier-protein) reductase
521	 61.33	0	581565..582314	-	249	15891408	-	Atu3532	-	GntR family transcriptional regulator
522	 58.98	0	582466..583506	+	346	159185785	-	Atu3533	-	ABC transporter, substrate binding protein (sugar)
523	 61.86	0	583646..584686	+	346	15891406	-	Atu3534	-	ABC transporter, membrane spanning protein
524	 61.76	0	584697..585674	+	325	15891405	-	Atu3535	-	ABC transporter, membrane spanning protein
525	 59.60	0	585679..587220	+	513	15891404	-	Atu3536	-	ABC transporter, nucleotide binding/ATPase protein
526	 58.57	0	587224..587433	-	69	17937244	-	Atu3537	-	hypothetical protein
527	 61.82	0	587569..588084	+	171	15891403	-	Atu3538	-	hypothetical protein
528	 56.45	0	588115..588672	-	185	15891402	-	Atu3539	-	hypothetical protein
529	 60.41	0	588723..589361	-	212	15891401	-	Atu3540	-	hypothetical protein
530	 62.02	0	589442..590044	+	200	159185786	-	Atu3541	-	hypothetical protein
531	 62.75	0	590164..590955	+	263	159185787	prp1	Atu3542	-	serine/threonine protein phosphatase I
532	 65.90	+1	590970..592664	-	564	15891398	dhbK	Atu3543	-	3,4-dihydroxy-2-butanone kinase
533	 63.40	+1	592991..594244	+	417	15891397	arsB	Atu3544	-	arsenical pump membrane protein
534	 64.24	+1	594315..594644	-	109	15891396	-	Atu3545	-	hypothetical protein
535	 57.80	0	594873..596891	+	672	15891395	-	Atu3546	-	hypothetical protein
536	 63.62	+1	596961..597617	-	218	15891394	-	Atu3547	-	hypothetical protein
537	 56.40	0	597762..598988	-	408	15891393	-	Atu3548	-	glycosyltransferase
538	 50.30	-2	598985..600322	-	445	15891392	-	Atu3549	-	hypothetical protein
539	 55.78	-1	600315..601793	-	492	159185788	-	Atu3550	-	putative succinoglycan transport protein
540	 58.82	0	601955..603190	-	411	15891390	-	Atu3551	-	glycosyltransferase
541	 59.14	0	603686..605014	+	442	159185789	-	Atu3553	-	hypothetical protein
542	 57.88	0	605158..605658	+	166	159185790	-	Atu3554	-	hypothetical protein
543	 63.32	+1	605840..606766	+	308	159185791	-	Atu3555	-	hypothetical protein
544	 58.40	0	606898..609147	+	749	159185792	-	Atu3556	-	exopolysaccharide polymerization/transport protein
545	 60.12	0	609161..609817	+	218	159186363	-	Atu8033	-	hypothetical protein
546	 59.93	0	609950..611419	+	489	159185793	-	Atu3557	-	hypothetical protein
547	 59.75	0	611436..612650	+	404	159185794	-	Atu3558	-	glycosyltransferase
548	 59.63	0	612705..613799	-	364	159185795	-	Atu3559	-	glycosyltransferase
549	 62.40	0	613852..615000	-	382	15891381	-	Atu3560	-	glycosyltransferase
550	 61.08	0	615376..615840	+	154	15891380	-	Atu3561	-	hypothetical protein
551	 51.41	-2	615816..616241	+	141	15891379	-	Atu3562	-	hypothetical protein
552	 61.70	0	616296..616778	-	160	159185796	greB	Atu3563	-	transcription elongation factor regulatory protein
553	 57.58	0	617050..618447	+	465	159185797	exsH	Atu3564	-	endo-1,3-1,4-beta-glycanase
554	 60.86	0	618525..619505	-	326	159185798	-	Atu3565	-	hypothetical protein
555	 53.66	-1	619899..620321	-	140	15891375	-	Atu3566	-	hypothetical protein
556	 55.89	-1	620391..620882	-	163	159185799	-	Atu3567	-	hypothetical protein
557	 62.47	0	621079..623007	+	642	159185800	-	Atu3568	-	hypothetical protein
558	 61.54	0	623016..623444	+	142	15891372	-	Atu3569	-	hypothetical protein
559	 62.57	0	623482..624678	+	398	159185801	-	Atu3570	-	hypothetical protein
560	 63.73	+1	624678..625391	+	237	15891370	-	Atu3571	-	hypothetical protein
561	 57.90	0	625388..626539	+	383	15891369	-	Atu8113	-	hypothetical protein
562	 60.96	0	626666..627103	+	145	15891368	-	Atu3572	-	transcriptional regulator
563	 53.33	-1	627132..627431	+	99	15891367	-	Atu3573	-	hypothetical protein
564	 59.77	0	627634..628416	-	260	15891366	xylG	Atu3574	-	ABC transporter, nucleotide binding/ATPase protein (xylose)
565	 62.33	0	628435..629748	-	437	159185802	xylH	Atu3575	-	ABC transporter, membrane spanning protein (xylose)
566	 59.37	0	629829..630869	-	346	15891364	xylF	Atu3576	-	ABC transporter, substrate binding protein (xylose)
567	 62.25	0	631102..632346	+	414	159185803	-	Atu3577	-	transcriptional regulator
568	 60.66	0	632366..633913	-	515	159185804	glpD	Atu3578	-	glycerol-3-phosphate dehydrogenase
569	 58.51	0	634081..634497	-	138	159185805	gloA	Atu3579	-	lactoylglutathione lyase
570	 61.90	0	634511..636652	-	713	15891360	mutA	Atu3580	-	methylmalonyl-CoA mutase
571	 59.63	0	636779..638782	-	667	15891359	pccA	Atu3581	-	propionyl-coenzyme A carboxylase, alpha polypeptide
572	 60.24	0	638787..639206	-	139	159185806	-	Atu3582	-	hypothetical protein
573	 59.89	0	639224..639784	-	186	15891357	-	Atu3583	-	hypothetical protein
574	 59.52	0	639819..640196	-	125	15891356	-	Atu8189	-	hypothetical protein
575	 58.31	0	640322..641218	-	298	159185807	-	Atu3585	-	putative glutathione S-transferase YghU
576	 59.49	0	641322..642854	-	510	159185808	-	Atu3586	-	propionyl-CoA carboxylase
577	 60.96	0	642973..644391	+	472	159185809	-	Atu3587	-	transcriptional regulator
578	 63.43	+1	644401..645048	-	215	15891352	alkA	Atu3588	-	DNA-3-methyladenine glycosidase II
579	 62.44	0	645097..645996	+	299	15891351	gltX	Atu3589	-	glutamyl-Q tRNA(Asp) synthetase
580	 61.44	0	645964..646881	-	305	159185810	-	Atu3590	-	transporter
581	 60.79	0	647058..647891	+	277	159185811	-	Atu3591	-	short chain dehydrogenase
582	 60.61	0	647909..648106	+	65	15891348	-	Atu8190	-	hypothetical protein
583	 59.93	0	648108..648686	+	192	159185812	-	Atu3593	-	hypothetical protein
584	 59.30	0	648719..649492	+	257	159185813	-	Atu3594	-	hypothetical protein
585	 62.25	0	649675..650421	+	248	15891345	etfB	Atu3595	-	electron transfer flavoprotein beta subunit
586	 62.58	0	650447..651376	+	309	159185814	etfA	Atu3596	-	electron transfer flavoprotein alpha subunit
587	 58.39	0	651491..652372	+	293	159185815	hbdA	Atu3597	-	3-hydroxybutyryl-CoA dehydrogenase
588	 60.39	0	652419..653087	-	222	15891342	dsbE	Atu3598	-	thiol:disulfide interchange protein
589	 60.96	0	653110..654510	+	466	159185816	argH	Atu3599	-	argininosuccinate lyase
590	 58.01	0	654497..654808	+	103	15891340	-	Atu3600	-	hypothetical protein
591	 61.23	0	654822..656090	+	422	15891339	lysA	Atu3601	-	diaminopimelate decarboxylase
592	 61.87	0	656257..658965	+	902	159185817	-	Atu3602	-	hypothetical protein
593	 55.07	-1	659150..659356	-	68	159186371	-	Atu8114	-	hypothetical protein
594	 61.11	0	659474..659833	-	119	15891337	-	Atu3603	-	two component response regulator
595	 58.38	0	659976..660518	-	180	15891336	hpt	Atu3604	-	hypoxanthine phosphoribosyltransferase
596	 60.71	0	660589..661260	-	223	159185818	-	Atu3605	-	hypothetical protein
597	 60.00	0	661462..662121	+	219	15891334	ftsE	Atu3606	-	cell division ATP-binding protein
598	 63.00	+1	662114..663121	+	335	15891333	ftsX	Atu3607	-	cell division protein
599	 60.11	0	663235..663966	+	243	15891332	-	Atu3608	-	hypothetical protein
600	 58.02	0	664081..664878	+	265	159185819	plsC	Atu3609	-	1-acyl-sn-glycerol-3-phosphate acyltransferase
601	 61.59	0	664851..665402	-	183	159185820	-	Atu3610	-	transporter
602	 61.78	0	665452..666453	+	333	15891329	-	Atu8095	-	hypothetical protein
603	 60.54	0	666625..667554	-	309	159185821	tyrC	Atu3611	-	cyclohexadienyl dehydrogenase
604	 58.81	0	667554..668660	-	368	15891327	hisC	Atu3612	-	histidinol-phosphate aminotransferase
605	 63.91	+1	668745..669506	-	253	159185822	-	Atu3613	-	hypothetical protein
606	 59.92	0	669626..670396	+	256	159185823	gloB	Atu3614	-	glyoxalase II
607	 65.03	+1	670408..670836	+	142	159185824	-	Atu3615	-	hypothetical protein
608	 57.24	0	670945..671718	-	257	15891323	-	Atu3616	-	hypothetical protein
59.48	MEAN

3.31	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.