IslandPathversion 1.0

IslandPath Analysis: Actinobacillus succinogenes 130Z



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 45.47 STD DEV: 4.33
Actinobacillus succinogenes 130Z, complete genome - 1..2319663
2079 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1146	 44.44	0	1313097..1314086	+	329	152978834	-	Asuc_1163	-	TRAP dicarboxylate transporter- DctP subunit
1147	 36.02	-2	1314106..1314588	+	160	152978835	-	Asuc_1164	-	tripartite ATP-independent periplasmic transporter DctQ
1148	 42.37	0	1314599..1315870	+	423	152978836	-	Asuc_1165	-	TRAP dicarboxylate transporter, DctM subunit
1149	 39.92	-1	1315877..1316893	+	338	152978837	-	Asuc_1166	-	regulatory protein LacI
1150	 44.34	0	1316893..1317837	+	314	152978838	-	Asuc_1167	-	ribokinase-like domain-containing protein
1151	 39.38	-1	1317847..1318821	+	324	152978839	-	Asuc_1168	-	D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding
1152	 52.80	+1	1318986..1320341	-	451	152978840	-	Asuc_1169	-	hypothetical protein
1153	 42.86	0	1320351..1320623	-	90	152978841	-	Asuc_1170	-	hypothetical protein
1154	 48.50	0	1320851..1322287	+	478	152978842	-	Asuc_1171	-	pyruvate kinase
1155	 46.82	0	1322569..1324347	-	592	152978843	-	Asuc_1172	-	ABC transporter
1156	 47.76	0	1324422..1326542	-	706	152978844	-	Asuc_1173	-	TonB-dependent siderophore receptor
1157	 50.64	+1	1326838..1328235	-	465	152978845	-	Asuc_1174	-	multidrug efflux protein
1158	 48.94	0	1328276..1328890	+	204	152978846	-	Asuc_1175	-	riboflavin synthase subunit alpha
1159	 24.64	-2	1329011..1330483	-	490	152978847	-	Asuc_1176	-	hypothetical protein
1160	 27.74	-2	1331437..1331865	-	142	152978848	-	Asuc_1178	-	GtrA family protein
1161	 48.47	0	1331995..1332582	-	195	152978849	-	Asuc_1179	-	hypothetical protein
1162	 49.73	0	1332897..1334207	+	436	152978850	-	Asuc_1180	-	xanthine/uracil/vitamin C permease
1163	 48.46	0	1334227..1334583	+	118	152978851	-	Asuc_1181	-	DsrE family protein
1164	 48.26	0	1334659..1338342	+	1227	152978852	-	Asuc_1182	-	exodeoxyribonuclease V, beta subunit
1165	 49.49	0	1338335..1340296	+	653	152978853	-	Asuc_1183	-	exodeoxyribonuclease V, alpha subunit
1166	 47.39	0	1340350..1341231	-	293	152978854	-	Asuc_1184	-	hypothetical protein
1167	 47.19	0	1341307..1343067	-	586	152978855	-	Asuc_1185	-	hypothetical protein
1168	 49.14	0	1343123..1343818	-	231	152978856	-	Asuc_1186	-	methyltransferase type 11
1169	 45.30	0	1343830..1344531	+	233	152978857	-	Asuc_1187	-	hydroxyacylglutathione hydrolase
1170	 45.96	0	1344574..1345389	-	271	152978858	-	Asuc_1188	-	DNA ligase
1171	 49.30	0	1345561..1346781	+	406	152978859	-	Asuc_1189	-	cytosine permease
1172	 48.85	0	1346797..1348059	+	420	152978860	-	Asuc_1190	-	cytosine deaminase
1173	 45.08	0	1348230..1349378	+	382	152978861	-	Asuc_1191	-	methionine synthase vitamin-B12 independent
1174	 43.17	0	1349460..1350089	-	209	152978862	-	Asuc_1192	-	OmpW family protein
1175	 44.91	0	1350635..1351645	-	336	152978863	-	Asuc_1193	-	DNA-binding transcriptional repressor PurR
1176	 45.14	0	1351835..1352122	+	95	152978864	-	Asuc_1194	-	citrate lyase subunit gamma
1177	 46.20	0	1352119..1353012	+	297	152978865	-	Asuc_1195	-	citrate lyase, beta subunit
1178	 47.24	0	1353027..1354529	+	500	152978866	-	Asuc_1196	-	citrate lyase, alpha subunit
1179	 45.00	0	1354609..1355088	+	159	152978867	-	Asuc_1197	-	regulator of ribonuclease activity A
1180	 50.25	+1	1355109..1356491	+	460	152978868	-	Asuc_1198	-	Holo-ACP synthase, triphosphoribosyl-dephospho-CoA synthase
1181	 45.89	0	1356770..1357462	-	230	152978869	-	Asuc_1199	-	carbonate dehydratase
1182	 45.98	0	1357486..1358853	-	455	152978870	-	Asuc_1200	-	hypothetical protein
1183	 45.24	0	1358856..1359695	-	279	152978871	-	Asuc_1201	-	7-cyano-7-deazaguanine reductase
1184	 46.79	0	1359682..1360476	-	264	152978872	-	Asuc_1202	-	hypothetical protein
1185	 47.04	0	1360531..1360851	+	106	152978873	-	Asuc_1203	-	hypothetical protein
1186	 49.37	0	1360851..1361567	+	238	152978874	-	Asuc_1204	-	tRNA pseudouridine synthase C
1187	 40.86	-1	1361710..1361895	-	61	152978875	-	Asuc_1205	-	hypothetical protein
1188	 42.22	0	1362486..1362980	-	164	152978876	-	Asuc_1208	-	putative methyltransferase
1189	 40.96	-1	1363212..1363880	-	222	152978877	-	Asuc_1209	-	hypothetical protein
1190	 44.18	0	1363877..1364641	-	254	152978878	-	Asuc_1210	-	hypothetical protein
1191	 38.99	-1	1366601..1366918	+	105	152978879	-	Asuc_1211	-	addiction module killer protein
1192	 39.52	-1	1366911..1367201	+	96	152978880	-	Asuc_1212	-	putative transcriptional regulator
1193	 38.95	-1	1367284..1368297	-	337	152978881	-	Asuc_1213	-	XRE family plasmid maintenance system antidote protein
1194	 38.01	-1	1368376..1368717	-	113	152978882	-	Asuc_1214	-	killer suppression protein HigA, putative
1195	 38.72	-1	1368950..1369636	-	228	152978883	-	Asuc_1215	-	putative phage repressor
1196	 39.22	-1	1369762..1369965	+	67	152978884	-	Asuc_1216	-	hypothetical protein
1197	 47.30	0	1370014..1370457	+	147	152978885	-	Asuc_1217	-	hypothetical protein
1198	 43.12	0	1370516..1370791	+	91	152978886	-	Asuc_1218	-	hypothetical protein
1199	 46.73	0	1371632..1372288	+	218	152978887	-	Asuc_1220	-	replication P family protein
1200	 42.25	0	1372298..1372813	+	171	152978888	-	Asuc_1221	-	DNA N-6-adenine-methyltransferase
1201	 40.72	-1	1372780..1373415	+	211	152978889	-	Asuc_1222	-	hypothetical protein
1202	 48.11	0	1373540..1373830	+	96	152978890	-	Asuc_1223	-	hypothetical protein
1203	 40.16	-1	1373827..1374192	+	121	152978891	-	Asuc_1224	-	endodeoxyribonuclease RusA
1204	 39.32	-1	1374207..1374557	+	116	152978892	-	Asuc_1225	-	hypothetical protein
1205	 32.34	-2	1375092..1376603	+	503	152978893	-	Asuc_1226	-	hypothetical protein
1206	 38.98	-1	1376899..1377819	+	306	152978894	-	Asuc_1227	-	antirepressor protein
1207	 34.72	-2	1377975..1378553	-	192	152978895	-	Asuc_1228	-	hypothetical protein
1208	 45.38	0	1378791..1379180	+	129	152978896	-	Asuc_1229	-	phage holin
1209	 44.44	0	1379200..1379748	+	182	152978897	-	Asuc_1230	-	LysM domain-containing protein
1210	 42.91	0	1380096..1380377	+	93	152978898	-	Asuc_1232	-	hypothetical protein
1211	 41.37	0	1380387..1380635	+	82	152978899	-	Asuc_1233	-	hypothetical protein
1212	 44.73	0	1380616..1380966	+	116	152978900	-	Asuc_1234	-	HNH endonuclease
1213	 44.65	0	1381082..1381576	+	164	152978901	-	Asuc_1235	-	P27 family phage terminase small subunit
1214	 45.19	0	1381564..1383267	+	567	152978902	-	Asuc_1236	-	phage terminase
1215	 48.37	0	1383264..1383416	+	50	152978903	-	Asuc_1237	-	hypothetical protein
1216	 45.54	0	1383413..1384633	+	406	152978904	-	Asuc_1238	-	HK97 family phage portal protein
1217	 47.43	0	1384626..1385228	+	200	152978905	-	Asuc_1239	-	HK97 family phage prohead protease
1218	 45.56	0	1385293..1386519	+	408	152978906	-	Asuc_1240	-	HK97 family phage major capsid protein
1219	 42.99	0	1386568..1386888	+	106	152978907	-	Asuc_1241	-	uncharacterized phage protein
1220	 47.80	0	1386885..1387202	+	105	152978908	-	Asuc_1242	-	phage head-tail adaptor, putative
1221	 51.55	+1	1387202..1387684	+	160	152978909	-	Asuc_1243	-	HK97 family phage protein
1222	 44.64	0	1387686..1388030	+	114	152978910	-	Asuc_1244	-	hypothetical protein
1223	 45.21	0	1388034..1388690	+	218	152978911	-	Asuc_1245	-	hypothetical protein
1224	 38.24	-1	1388751..1389158	+	135	152978912	-	Asuc_1246	-	hypothetical protein
1225	 37.08	-1	1389167..1389433	+	88	152978913	-	Asuc_1247	-	hypothetical protein
1226	 32.56	-2	1389478..1389735	+	85	152978914	-	Asuc_1248	-	hypothetical protein
1227	 44.98	0	1389792..1393088	+	1098	152978915	-	Asuc_1249	-	phage tape measure protein
1228	 44.05	0	1393098..1393433	+	111	152978916	-	Asuc_1250	-	phage minor tail family protein
1229	 44.99	0	1393433..1394170	+	245	152978917	-	Asuc_1251	-	phage minor tail protein L
1230	 42.31	0	1394172..1394951	+	259	152978918	-	Asuc_1252	-	NLP/P60 protein
1231	 43.19	0	1394885..1395493	+	202	152978919	-	Asuc_1253	-	bacteriophage lambda tail assembly I
1232	 44.64	0	1395564..1399535	+	1323	152978920	-	Asuc_1254	-	hypothetical protein
1233	 36.52	-2	1399532..1399813	+	93	152978921	-	Asuc_1255	-	hypothetical protein
1234	 37.49	-1	1399800..1400810	+	336	152978922	-	Asuc_1256	-	hypothetical protein
1235	 41.59	0	1400823..1401161	+	112	152978923	-	Asuc_1257	-	hypothetical protein
1236	 40.26	-1	1401199..1402482	-	427	152978924	-	Asuc_1258	-	phage integrase family protein
1237	 42.90	0	1403089..1403412	-	107	152978925	-	Asuc_1259	-	dsDNA-mimic protein
1238	 46.94	0	1403422..1404237	-	271	152978926	-	Asuc_1260	-	Cof-like hydrolase
1239	 46.89	0	1404352..1405251	-	299	152978927	-	Asuc_1261	-	formate dehydrogenase accessory protein FdhE
1240	 45.12	0	1405482..1406168	-	228	152978928	-	Asuc_1262	-	formate dehydrogenase, gamma subunit
1241	 49.42	0	1406161..1407105	-	314	152978929	-	Asuc_1263	-	formate dehydrogenase, beta subunit
1242	 46.02	0	1407105..1409531	-	808	152978930	-	Asuc_1264	-	formate dehydrogenase, alpha subunit
1243	 51.36	+1	1409580..1410167	-	195	152978931	-	Asuc_1265	-	formate dehydrogenase
1244	 47.37	0	1410471..1411289	+	272	152978932	-	Asuc_1266	-	formate dehydrogenase family accessory protein FdhD
1245	 45.81	0	1411390..1412439	-	349	152978933	-	Asuc_1267	-	extracellular solute-binding protein
45.47	MEAN

4.33	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.