IslandPathversion 1.0

IslandPath Analysis: Acidovorax sp. JS42



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 66.47 STD DEV: 4.71
Acidovorax sp. JS42, complete genome - 1..4448856
4007 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
3687	 70.15	0	4068920..4069894	+	324	121596123	-	Ajs_3836	-	flagellar rod assembly protein/muramidase FlgJ
3688	 63.34	0	4069921..4071996	+	691	121596124	-	Ajs_3837	-	flagellar hook-associated protein FlgK
3689	 69.44	0	4072008..4073270	+	420	121596125	-	Ajs_3838	-	flagellar hook-associated protein 3
3690	 71.62	+1	4073359..4074570	+	403	121596126	-	Ajs_3839	-	putative signal transduction protein
3691	 69.95	0	4074587..4076047	+	486	121596127	-	Ajs_3840	-	sodium:neurotransmitter symporter
3692	 73.77	+1	4076186..4077706	+	506	121596128	-	Ajs_3841	-	2-nitropropane dioxygenase, NPD
3693	 71.06	0	4077756..4079213	-	485	121596129	-	Ajs_3842	-	GntR family transcriptional regulator
3694	 70.17	0	4079358..4079957	+	199	121596130	-	Ajs_3843	-	hypothetical protein
3695	 74.18	+1	4080026..4080970	+	314	121596131	-	Ajs_3844	-	hypothetical protein
3696	 69.40	0	4081034..4082314	+	426	121596132	-	Ajs_3845	-	GntR family transcriptional regulator
3697	 73.17	+1	4082428..4083303	+	291	121596133	-	Ajs_3846	-	PhzF family phenazine biosynthesis protein
3698	 71.49	+1	4083300..4084274	+	324	121596134	-	Ajs_3847	-	hypothetical protein
3699	 71.35	+1	4084452..4085540	+	362	121596135	-	Ajs_3848	-	hypothetical protein
3700	 66.07	0	4085574..4086752	+	392	121596136	-	Ajs_3849	-	putative UreA/short-chain amide ABC transporter
3701	 71.03	0	4087098..4088219	+	373	121596137	-	Ajs_3850	-	short-chain dehydrogenase/reductase SDR
3702	 69.05	0	4088280..4088951	+	223	121596138	-	Ajs_3851	-	phosphoglycerate mutase
3703	 70.00	0	4089017..4089886	-	289	121596139	-	Ajs_3852	-	creatininase
3704	 72.38	+1	4089895..4090647	+	250	121596140	-	Ajs_3853	-	metal-dependent hydrolases related to alanyl-tRNA synthetase
3705	 72.40	+1	4090700..4092916	+	738	121596141	-	Ajs_3854	-	cytochrome c biogenesis protein, transmembrane region
3706	 73.83	+1	4092917..4093963	-	348	121596142	-	Ajs_3855	-	hypothetical protein
3707	 75.14	+1	4094145..4095395	+	416	121596143	-	Ajs_3856	-	Na+/H+ antiporter NhaA
3708	 67.44	0	4095445..4095960	+	171	121596144	-	Ajs_3857	-	CoA-binding domain-containing protein
3709	 69.91	0	4096015..4097340	+	441	121596145	-	Ajs_3858	-	O-acetylhomoserine/O-acetylserine sulfhydrylase
3710	 65.04	0	4097393..4098376	-	327	121596146	-	Ajs_3859	-	integral membrane protein TerC
3711	 71.41	+1	4098504..4099430	+	308	121596147	-	Ajs_3860	-	LysR family transcriptional regulator
3712	 69.54	0	4099532..4100644	+	370	121596148	-	Ajs_3861	-	uroporphyrinogen decarboxylase
3713	 73.29	+1	4101249..4103468	+	739	121596149	-	Ajs_3862	-	primosomal protein N'
3714	 68.21	0	4103607..4104707	+	366	121596150	-	Ajs_3863	-	L-asparaginases, type II
3715	 70.85	0	4104916..4105872	-	318	121596151	-	Ajs_3864	-	auxin efflux carrier
3716	 67.92	0	4106049..4108118	+	689	121596152	-	Ajs_3865	-	UvrD/REP helicase
3717	 68.74	0	4108123..4108557	+	144	121596153	-	Ajs_3866	-	hypothetical protein
3718	 70.77	0	4108563..4109780	+	405	121596154	-	Ajs_3867	-	phospholipase A1
3719	 67.96	0	4110022..4110408	+	128	121596155	-	Ajs_3868	-	hypothetical protein
3720	 72.39	+1	4110484..4110972	-	162	121596156	-	Ajs_3869	-	UspA domain-containing protein
3721	 66.67	0	4111075..4112247	+	390	121596157	-	Ajs_3870	-	queuine tRNA-ribosyltransferase
3722	 73.04	+1	4112327..4112938	+	203	121596158	-	Ajs_3871	-	hypothetical protein
3723	 72.01	+1	4113074..4114234	-	386	121596159	-	Ajs_3872	-	hypothetical protein
3724	 73.91	+1	4114313..4115113	-	266	121596160	-	Ajs_3873	-	hypothetical protein
3725	 75.60	+1	4115116..4115574	-	152	121596161	-	Ajs_3874	-	hypothetical protein
3726	 68.64	0	4115598..4116206	-	202	121596162	-	Ajs_3875	-	hypothetical protein
3727	 64.06	0	4116209..4116784	-	191	121596163	-	Ajs_3876	-	AsnC family transcriptional regulator
3728	 66.95	0	4116805..4117875	+	356	121596164	-	Ajs_3877	-	1-aminocyclopropane-1-carboxylate deaminase
3729	 68.35	0	4117915..4119870	-	651	121596165	-	Ajs_3878	-	phospholipid/glycerol acyltransferase
3730	 68.28	0	4120005..4120748	+	247	121596166	-	Ajs_3879	-	XRE family transcriptional regulator
3731	 70.75	0	4120767..4121207	-	146	121596167	-	Ajs_3880	-	alcohol dehydrogenase
3732	 69.36	0	4121233..4121640	-	135	121596168	-	Ajs_3881	-	hypothetical protein
3733	 72.18	+1	4122003..4122419	+	138	121596169	-	Ajs_3882	-	hypothetical protein
3734	 67.88	0	4122586..4123572	+	328	121596170	-	Ajs_3883	-	hypothetical protein
3735	 72.89	+1	4123605..4125083	+	492	121596171	-	Ajs_3884	-	FAD dependent oxidoreductase
3736	 74.86	+1	4125080..4126189	+	369	121596172	-	Ajs_3885	-	uncharacterized peroxidase-related enzyme
3737	 71.78	+1	4126566..4127876	+	436	121596173	-	Ajs_3886	-	D-amino-acid dehydrogenase
3738	 72.59	+1	4127948..4129213	-	421	121596174	-	Ajs_3887	-	hypothetical protein
3739	 71.71	+1	4129254..4130225	-	323	121596175	-	Ajs_3888	-	hypothetical protein
3740	 65.00	0	4130446..4130865	+	139	121596176	-	Ajs_3889	-	histone family protein DNA-binding protein
3741	 67.07	0	4130951..4131703	-	250	121596177	-	Ajs_3890	-	protein tyrosine/serine phosphatase
3742	 61.66	-1	4132165..4132863	-	232	121596178	-	Ajs_3891	-	two component Fis family transcriptional regulator
3743	 68.68	0	4132900..4135188	-	762	121596179	-	Ajs_3892	-	multi-sensor signal transduction histidine kinase
3744	 65.33	0	4135185..4135856	-	223	121596180	-	Ajs_3893	-	hypothetical protein
3745	 70.16	0	4135807..4137180	-	457	121596181	-	Ajs_3894	-	sun protein
3746	 70.47	0	4137177..4137755	-	192	121596182	-	Ajs_3895	-	hypothetical protein
3747	 64.96	0	4137896..4142125	-	1409	121596183	-	Ajs_3896	-	DNA-directed RNA polymerase subunit beta'
3748	 63.88	0	4142256..4146380	-	1374	121596184	-	Ajs_3897	-	DNA-directed RNA polymerase, beta subunit
3749	 61.42	-1	4146654..4147034	-	126	121596185	-	Ajs_3898	-	50S ribosomal protein L12P
3750	 60.75	-1	4147084..4147590	-	168	121596186	-	Ajs_3899	-	50S ribosomal protein L10P
3751	 63.22	0	4147834..4148529	-	231	121596187	rplA	Ajs_3900	-	50S ribosomal protein L1
3752	 57.87	-1	4148530..4148961	-	143	121596188	-	Ajs_3901	-	50S ribosomal protein L11P
3753	 55.33	-2	4149071..4149661	-	196	121596189	-	Ajs_3902	-	transcription antitermination protein nusG
3754	 54.95	-2	4149661..4150044	-	127	121596190	secE	Ajs_3903	-	preprotein translocase subunit SecE
3755	 63.73	0	4150221..4151411	-	396	121596191	-	Ajs_3904	-	elongation factor Tu
3756	 64.20	0	4152029..4152352	+	107	121596192	-	Ajs_3905	-	transposase IS3/IS911 family protein
3757	 62.78	0	4159212..4160162	-	316	121596193	-	Ajs_3907	-	glutathione synthetase
3758	 67.66	0	4160198..4161406	-	402	121596194	-	Ajs_3908	-	benzoate transporter
3759	 64.85	0	4161510..4163378	-	622	121596195	-	Ajs_3909	-	K+ potassium transporter
3760	 63.81	0	4163519..4164814	-	431	121596196	-	Ajs_3910	-	glutamate--cysteine ligase
3761	 68.37	0	4164879..4166345	-	488	121596197	-	Ajs_3911	-	cation transporter
3762	 70.03	0	4166361..4167815	-	484	121596198	trkA	Ajs_3912	-	potassium transporter peripheral membrane component
3763	 68.15	0	4167880..4169160	-	426	121596199	-	Ajs_3913	-	gamma-glutamyl phosphate reductase
3764	 71.43	+1	4169251..4169544	+	97	121596200	-	Ajs_3914	-	hypothetical protein
3765	 71.92	+1	4169601..4170647	-	348	121596201	holA	Ajs_3915	-	DNA polymerase III subunit delta
3766	 70.98	0	4170721..4171230	-	169	121596202	-	Ajs_3916	-	rare lipoprotein B
3767	 66.78	0	4171244..4173976	-	910	121596203	-	Ajs_3917	-	leucyl-tRNA synthetase
3768	 63.27	0	4174129..4175217	+	362	121596204	-	Ajs_3918	-	transposase, IS4 family protein
3769	 68.85	0	4175445..4176725	+	426	121596205	-	Ajs_3919	-	MscS mechanosensitive ion channel
3770	 69.61	0	4176810..4177250	-	146	121596206	-	Ajs_3920	-	biopolymer transport protein ExbD/TolR
3771	 71.52	+1	4177265..4177924	-	219	121596207	-	Ajs_3921	-	MotA/TolQ/ExbB proton channel
3772	 69.46	0	4177932..4178753	-	273	121596208	-	Ajs_3922	-	dihydrodipicolinate reductase
3773	 66.85	0	4178830..4179381	-	183	121596209	-	Ajs_3923	-	SmpA/OmlA domain-containing protein
3774	 61.11	-1	4179450..4179899	+	149	121596210	-	Ajs_3924	-	ferric uptake regulator family protein
3775	 66.98	0	4179913..4180869	-	318	121596211	-	Ajs_3925	-	HPr kinase/phosphorylase
3776	 63.68	0	4180891..4181358	-	155	121596212	-	Ajs_3926	-	PTS IIA-like nitrogen-regulatory protein PtsN
3777	 58.19	-1	4181492..4181845	-	117	121596213	-	Ajs_3927	-	SSU ribosomal protein S30P / sigma 54 modulation protein
3778	 68.30	0	4182222..4183142	+	306	121596214	-	Ajs_3928	-	phosphoribosylaminoimidazole-succinocarboxamide synthase
3779	 64.82	0	4183196..4185304	-	702	121596215	-	Ajs_3929	-	TonB-dependent siderophore receptor
3780	 73.09	+1	4185786..4186610	-	274	121596216	-	Ajs_3930	-	protein of unknown function DUF306, Meta and HslJ
3781	 65.13	0	4186652..4187560	-	302	121596217	-	Ajs_3931	-	thioredoxin
3782	 69.07	0	4187745..4188326	+	193	121596218	-	Ajs_3932	-	PfpI family intracellular peptidase
3783	 70.90	0	4188426..4188803	+	125	121596219	-	Ajs_3933	-	hypothetical protein
3784	 73.29	+1	4188875..4189372	+	165	121596220	-	Ajs_3934	-	phosphoribosylaminoimidazole carboxylase, catalytic subunit
3785	 70.83	0	4189369..4190544	+	391	121596221	-	Ajs_3935	-	phosphoribosylaminoimidazole carboxylase ATPase subunit
3786	 72.67	+1	4190556..4191554	+	332	121596222	-	Ajs_3936	-	translation factor SUA5
66.47	MEAN

4.71	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.