IslandPathversion 1.0

IslandPath Analysis: Acidovorax sp. JS42



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 66.47 STD DEV: 4.71
Acidovorax sp. JS42, complete genome - 1..4448856
4007 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
2653	 69.29	0	2931456..2931989	+	177	121595089	-	Ajs_2768	-	NusB antitermination factor
2654	 69.03	0	2932083..2933267	+	394	121595090	-	Ajs_2769	-	aminotransferase
2655	 63.38	0	2933287..2933712	+	141	121595091	-	Ajs_2770	-	4-hydroxybenzoyl-CoA thioesterase
2656	 66.10	0	2933709..2934410	+	233	121595092	-	Ajs_2771	-	MotA/TolQ/ExbB proton channel
2657	 64.55	0	2934590..2935015	+	141	121595093	-	Ajs_2772	-	biopolymer transport protein ExbD/TolR
2658	 70.88	0	2935037..2936008	+	323	121595094	-	Ajs_2773	-	TonB family protein
2659	 68.62	0	2936131..2937462	-	443	121595095	-	Ajs_2774	-	general substrate transporter
2660	 64.57	0	2937774..2938823	+	349	121595096	-	Ajs_2775	-	ubiquinol oxidase, subunit II
2661	 63.11	0	2938951..2940891	+	646	121595097	-	Ajs_2776	-	cytochrome-c oxidase
2662	 64.47	0	2940884..2941519	+	211	121595098	-	Ajs_2777	-	cytochrome c oxidase, subunit III
2663	 61.77	0	2941520..2941948	+	142	121595099	-	Ajs_2778	-	cytochrome C oxidase subunit IV
2664	 70.86	0	2941960..2942769	+	269	121595100	-	Ajs_2779	-	Surfeit locus 1 family protein
2665	 67.56	0	2942766..2944106	+	446	121595101	-	Ajs_2780	-	integral membrane sensor signal transduction histidine kinase
2666	 66.48	0	2944096..2944629	+	177	121595102	-	Ajs_2781	-	two component Fis family transcriptional regulator
2667	 64.57	0	2944741..2945169	+	142	121595103	-	Ajs_2782	-	glutathione S-transferase-like protein
2668	 66.09	0	2945705..2947081	+	458	121595104	-	Ajs_2783	-	peptidase U32
2669	 68.92	0	2947137..2948114	+	325	121595105	-	Ajs_2784	-	hypothetical protein
2670	 74.54	+1	2948122..2948553	-	143	121595106	-	Ajs_2785	-	hypothetical protein
2671	 72.06	+1	2948659..2949474	+	271	121595107	-	Ajs_2786	-	XRE family transcriptional regulator
2672	 64.89	0	2949694..2952285	-	863	121595108	-	Ajs_2787	-	bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase
2673	 67.95	0	2952400..2953020	-	206	121595109	-	Ajs_2788	-	hypothetical protein
2674	 68.25	0	2953080..2954090	-	336	121595110	-	Ajs_2789	-	HpcH/HpaI aldolase
2675	 65.38	0	2954087..2954863	-	258	121595111	-	Ajs_2790	-	trans-aconitate 2-methyltransferase
2676	 63.53	0	2954876..2955928	-	350	121595112	-	Ajs_2791	-	malate dehydrogenase
2677	 65.96	0	2955998..2956852	+	284	121595113	-	Ajs_2792	-	GntR family transcriptional regulator
2678	 63.91	0	2956992..2957426	+	144	121595114	-	Ajs_2793	-	succinate dehydrogenase subunit C
2679	 66.12	0	2957470..2957835	+	121	121595115	-	Ajs_2794	-	succinate dehydrogenase subunit D
2680	 65.01	0	2957858..2959663	+	601	121595116	-	Ajs_2795	-	succinate dehydrogenase subunit A
2681	 62.41	0	2959694..2960398	+	234	121595117	-	Ajs_2796	-	succinate dehydrogenase subunit B
2682	 63.37	0	2960404..2960676	+	90	121595118	-	Ajs_2797	-	hypothetical protein
2683	 64.07	0	2960719..2962029	+	436	121595119	gltA	Ajs_2798	-	type II citrate synthase
2684	 71.54	+1	2962344..2962610	+	88	121595120	-	Ajs_2799	-	hypothetical protein
2685	 66.40	0	2962646..2963761	+	371	121595121	-	Ajs_2800	-	alcohol dehydrogenase
2686	 69.49	0	2963868..2964752	+	294	121595122	-	Ajs_2801	-	carboxylesterase
2687	 70.33	0	2964943..2965242	-	99	121595123	-	Ajs_2802	-	antibiotic biosynthesis monooxygenase
2688	 68.65	0	2965298..2966506	-	402	121595124	-	Ajs_2803	-	radical SAM domain-containing protein
2689	 61.58	-1	2966520..2967521	-	333	121595125	-	Ajs_2804	-	hypothetical protein
2690	 64.22	0	2967830..2968237	+	135	121595126	-	Ajs_2805	-	GreA/GreB family elongation factor
2691	 69.07	0	2968291..2969454	-	387	121595127	-	Ajs_2806	-	acyltransferase 3
2692	 66.25	0	2969641..2970597	-	318	121595128	-	Ajs_2807	-	2-nitropropane dioxygenase, NPD
2693	 66.33	0	2970676..2972466	-	596	121595129	-	Ajs_2808	-	acyl-CoA dehydrogenase domain-containing protein
2694	 68.60	0	2972548..2973480	-	310	121595130	-	Ajs_2809	-	electron transfer flavoprotein, alpha subunit
2695	 64.13	0	2973502..2974251	-	249	121595131	-	Ajs_2810	-	electron transfer flavoprotein beta-subunit
2696	 66.90	0	2974413..2975696	-	427	121595132	-	Ajs_2811	-	MscS mechanosensitive ion channel
2697	 67.77	0	2975716..2976534	-	272	121595133	-	Ajs_2812	-	enoyl-CoA hydratase
2698	 66.46	0	2976583..2977542	-	319	121595134	-	Ajs_2813	-	histone deacetylase superfamily protein
2699	 69.16	0	2977581..2978501	+	306	121595135	-	Ajs_2814	-	ATPase
2700	 73.39	+1	2978506..2979531	+	341	121595136	-	Ajs_2815	-	hypothetical protein
2701	 72.47	+1	2979631..2981697	+	688	121595137	-	Ajs_2816	-	transglutaminase domain-containing protein
2702	 66.85	0	2981694..2982767	+	357	121595138	-	Ajs_2817	-	lytic murein transglycosylase B
2703	 69.62	0	2982781..2983695	-	304	121595139	-	Ajs_2818	-	LysR family transcriptional regulator
2704	 67.77	0	2983809..2984891	+	360	121595140	-	Ajs_2819	-	hypothetical protein
2705	 68.11	0	2984892..2986205	-	437	121595141	-	Ajs_2820	-	putative transporter signal peptide protein
2706	 71.73	+1	2986258..2987067	-	269	121595142	-	Ajs_2821	-	putative lipoprotein
2707	 68.93	0	2987279..2987719	+	146	121595143	-	Ajs_2822	-	CS protein
2708	 68.82	0	2987975..2989183	-	402	121595144	-	Ajs_2823	-	hypothetical protein
2709	 70.95	0	2989180..2989950	-	256	121595145	-	Ajs_2824	-	ABC transporter related
2710	 73.30	+1	2989947..2991347	-	466	121595146	-	Ajs_2825	-	Fis family transcriptional regulator
2711	 75.07	+1	2991419..2992846	-	475	121595147	-	Ajs_2826	-	RND efflux system outer membrane lipoprotein
2712	 73.14	+1	2993005..2994456	+	483	121595148	-	Ajs_2827	-	aldehyde dehydrogenase
2713	 72.01	+1	2994526..2995629	-	367	121595149	-	Ajs_2828	-	O-sialoglycoprotein endopeptidase
2714	 68.79	0	2995653..2996831	-	392	121595150	-	Ajs_2829	-	extracellular ligand-binding receptor
2715	 71.98	+1	2996974..2997594	+	206	121595151	-	Ajs_2830	-	response regulator receiver/ANTAR domain-containing protein
2716	 67.39	0	2997926..2999170	+	414	121595152	-	Ajs_2831	-	twin-arginine translocation pathway signal
2717	 68.58	0	2999205..3000146	+	313	121595153	-	Ajs_2832	-	nitrate ABC transporter, inner membrane subunit
2718	 69.78	0	3000143..3000946	+	267	121595154	-	Ajs_2833	-	nitrate ABC transporter, ATPase subunits C and D
2719	 65.30	0	3001123..3001560	-	145	121595155	-	Ajs_2834	-	signal-transduction protein
2720	 74.14	+1	3001740..3002408	-	222	121595156	-	Ajs_2835	-	hypothetical protein
2721	 72.41	+1	3002785..3004125	+	446	121595157	-	Ajs_2836	-	RND family efflux transporter MFP subunit
2722	 67.30	0	3004144..3007311	+	1055	121595158	-	Ajs_2837	-	hydrophobe/amphiphile efflux-1 (HAE1) family protein
2723	 73.16	+1	3007308..3008894	+	528	121595159	-	Ajs_2838	-	RND efflux system outer membrane lipoprotein
2724	 68.37	0	3009383..3011848	+	821	121595160	-	Ajs_2839	-	assimilatory nitrite reductase (NAD(P)H) large subunit precursor
2725	 71.79	+1	3011925..3012314	+	129	121595161	-	Ajs_2840	-	assimilatory nitrite reductase (NAD(P)H) small subunit
2726	 72.93	+1	3012685..3015543	+	952	121595162	-	Ajs_2841	-	assimilatory nitrate reductase (NADH) alpha subunit apoprotein
2727	 69.25	0	3015637..3016566	+	309	121595163	-	Ajs_2842	-	hypothetical protein
2728	 71.11	0	3016563..3017372	+	269	121595164	-	Ajs_2843	-	uroporphyrinogen-III C-methyltransferase
2729	 66.87	0	3017377..3017877	-	166	121595165	-	Ajs_2844	-	thioesterase superfamily protein
2730	 71.21	+1	3018071..3019237	+	388	121595166	-	Ajs_2845	-	extracellular ligand-binding receptor
2731	 69.00	0	3019308..3020549	+	413	121595167	-	Ajs_2846	-	hypothetical protein
2732	 69.57	0	3020652..3021857	+	401	121595168	-	Ajs_2847	-	NnrS family protein
2733	 65.00	0	3021928..3022227	+	99	121595169	-	Ajs_2848	-	hypothetical protein
2734	 67.92	0	3022295..3022852	-	185	121595170	-	Ajs_2849	-	hypothetical protein
2735	 66.46	0	3022849..3023328	-	159	121595171	-	Ajs_2850	-	NifU family SUF system FeS assembly protein
2736	 70.54	0	3023325..3024590	-	421	121595172	-	Ajs_2851	-	aminotransferase, class V
2737	 72.60	+1	3024583..3025830	-	415	121595173	-	Ajs_2852	-	SufBD protein
2738	 68.74	0	3025835..3026605	-	256	121595174	-	Ajs_2853	-	FeS assembly ATPase SufC
2739	 65.93	0	3026686..3028179	-	497	121595175	-	Ajs_2854	-	cysteine desulfurase activator complex subunit SufB
2740	 74.44	+1	3028332..3029129	-	265	121595176	-	Ajs_2855	-	ArsR family transcriptional regulator
2741	 69.49	0	3029160..3029513	+	117	121595177	-	Ajs_2856	-	NIPSNAP family protein
2742	 71.60	+1	3029510..3029914	+	134	121595178	-	Ajs_2857	-	antibiotic biosynthesis monooxygenase
2743	 60.09	-1	3030044..3030256	+	70	121595179	rpsU	Ajs_2858	-	30S ribosomal protein S21
2744	 65.15	0	3030354..3030815	+	153	121595180	-	Ajs_2859	-	GatB/Yqey domain-containing protein
2745	 67.21	0	3031155..3032249	+	364	121595181	-	Ajs_2860	-	tartrate dehydrogenase
2746	 66.30	0	3032454..3032726	+	90	121595182	-	Ajs_2861	-	hypothetical protein
2747	 69.36	0	3032723..3033724	+	333	121595183	-	Ajs_2862	-	cation diffusion facilitator family transporter
2748	 69.30	0	3033736..3034380	+	214	121595184	-	Ajs_2863	-	hypothetical protein
2749	 72.45	+1	3034406..3034837	+	143	121595185	-	Ajs_2864	-	glutathione-dependent formaldehyde-activating, GFA
2750	 61.39	-1	3035182..3036261	+	359	121595186	-	Ajs_2865	-	integrase catalytic subunit
2751	 63.27	0	3036370..3037458	+	362	121595187	-	Ajs_2866	-	transposase, IS4 family protein
2752	 70.32	0	3037716..3038591	+	291	121595188	-	Ajs_2867	-	glutamate racemase
66.47	MEAN

4.71	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.