IslandPathversion 1.0

IslandPath Analysis: Acidovorax sp. JS42



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 66.47 STD DEV: 4.71
Acidovorax sp. JS42, complete genome - 1..4448856
4007 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
2426	 68.75	0	2683989..2684900	-	303	121594862	-	Ajs_2522	-	short-chain dehydrogenase/reductase SDR
2427	 67.34	0	2685104..2687617	-	837	121594863	ligD	Ajs_2523	-	ATP-dependent DNA ligase
2428	 65.04	0	2687648..2688691	-	347	121594864	-	Ajs_2524	-	Ku domain-containing protein
2429	 60.10	-1	2689273..2689470	-	65	121594865	-	Ajs_2525	-	hypothetical protein
2430	 61.65	-1	2689533..2690708	-	391	121594866	-	Ajs_2526	-	putative transcriptional regulator
2431	 58.28	-1	2690690..2693359	-	889	121594867	-	Ajs_2527	-	hypothetical protein
2432	 63.78	0	2693356..2694567	-	403	121594868	-	Ajs_2528	-	hypothetical protein
2433	 62.38	0	2694560..2696614	-	684	121594869	-	Ajs_2529	-	hypothetical protein
2434	 59.06	-1	2696611..2699397	-	928	121594870	-	Ajs_2530	-	putative DNA methylase
2435	 57.71	-1	2699456..2699656	-	66	121594871	-	Ajs_2531	-	phage transcriptional regulator, AlpA
2436	 67.10	0	2700955..2701185	-	76	121594872	-	Ajs_2534	-	hypothetical protein
2437	 66.67	0	2701248..2701526	-	92	121594873	-	Ajs_2535	-	hypothetical protein
2438	 64.73	0	2701523..2703121	-	532	121594874	-	Ajs_2536	-	TrbL/VirB6 plasmid conjugal transfer protein
2439	 62.96	0	2703118..2703387	-	89	121594875	-	Ajs_2537	-	putative entry/exclusion protein TrbK
2440	 63.74	0	2703403..2704188	-	261	121594876	-	Ajs_2538	-	mating pair formation protein TrbJ
2441	 61.83	0	2704430..2704801	-	123	121594877	-	Ajs_2539	-	OriT-binding protein, TraJ
2442	 62.01	0	2705121..2705399	-	92	121594878	-	Ajs_2540	-	putative OriT-binding protein, TraK
2443	 60.23	-1	2706113..2706982	-	289	121594879	-	Ajs_2541	-	plasmid and phage iteron-binding protein
2444	 68.26	0	2706972..2707850	-	292	121594880	-	Ajs_2542	-	replication protein A
2445	 60.39	-1	2707854..2708108	-	84	121594881	-	Ajs_2543	-	hypothetical protein
2446	 58.59	-1	2708170..2709159	+	329	121594882	-	Ajs_2544	-	hypothetical protein
2447	 62.20	0	2709239..2709484	+	81	121594883	-	Ajs_2545	-	phage transcriptional regulator, AlpA
2448	 64.17	0	2709576..2710778	-	400	121594884	-	Ajs_2546	-	phage integrase family protein
2449	 65.18	0	2711086..2712702	-	538	121594885	guaA	Ajs_2547	-	bifunctional GMP synthase/glutamine amidotransferase protein
2450	 64.97	0	2712780..2714255	-	491	121594886	-	Ajs_2548	-	inosine-5'-monophosphate dehydrogenase
2451	 65.34	0	2714256..2714858	+	200	121594887	-	Ajs_2549	-	hypothetical protein
2452	 68.41	0	2714944..2715288	-	114	121594888	-	Ajs_2550	-	hypothetical protein
2453	 60.32	-1	2715281..2715721	-	146	121594889	-	Ajs_2551	-	cyclase/dehydrase
2454	 60.97	-1	2715836..2716309	+	157	121594890	smpB	Ajs_2552	-	SsrA-binding protein
2455	 67.76	0	2716408..2716773	+	121	121594891	-	Ajs_2553	-	hypothetical protein
2456	 67.83	0	2716790..2717305	+	171	121594892	-	Ajs_2554	-	ECF subfamily RNA polymerase sigma-24 factor
2457	 69.88	0	2717336..2718175	+	279	121594893	-	Ajs_2555	-	putative transmembrane anti-sigma factor
2458	 67.49	0	2718126..2719217	-	363	121594894	-	Ajs_2556	-	enoyl-CoA hydratase
2459	 66.55	0	2719214..2720098	-	294	121594895	-	Ajs_2557	-	hypothetical protein
2460	 64.04	0	2720307..2722136	-	609	121594896	-	Ajs_2558	-	GTP-binding protein TypA
2461	 66.47	0	2722133..2723134	-	333	121594897	-	Ajs_2559	-	tRNA pseudouridine synthase B
2462	 62.70	0	2723131..2723508	-	125	121594898	-	Ajs_2560	-	ribosome-binding factor A
2463	 64.34	0	2723521..2726352	-	943	121594899	-	Ajs_2561	-	translation initiation factor 2
2464	 61.89	0	2726377..2727861	-	494	121594900	-	Ajs_2562	-	NusA antitermination factor
2465	 61.82	0	2727931..2728590	-	219	121594901	-	Ajs_2563	-	hypothetical protein
2466	 57.95	-1	2728717..2729106	-	129	121594902	-	Ajs_2564	-	hypothetical protein
2467	 63.53	0	2729117..2730391	-	424	121594903	-	Ajs_2565	-	cytochrome c, class I
2468	 65.07	0	2730388..2731074	-	228	121594904	-	Ajs_2566	-	putative cytochrome c
2469	 61.90	0	2731118..2731873	-	251	121594905	-	Ajs_2567	-	short-chain dehydrogenase/reductase SDR
2470	 62.96	0	2731915..2734209	-	764	121594906	-	Ajs_2568	-	ribonuclease R
2471	 64.27	0	2734697..2735071	+	124	121594907	-	Ajs_2569	-	hypothetical protein
2472	 66.03	0	2735129..2735911	-	260	121594908	-	Ajs_2570	-	tRNA/rRNA methyltransferase (SpoU)
2473	 67.94	0	2735942..2736571	-	209	121594909	-	Ajs_2571	-	ribonuclease H
2474	 66.32	0	2736546..2737703	-	385	121594910	-	Ajs_2572	-	lipid-A-disaccharide synthase
2475	 65.28	0	2737719..2738510	-	263	121594911	-	Ajs_2573	-	acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase
2476	 61.45	-1	2738528..2738968	-	146	121594912	-	Ajs_2574	-	3-hydroxyacyl-[acyl-carrier-protein] dehydratase
2477	 65.65	0	2738984..2739964	-	326	121594913	-	Ajs_2575	-	UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase
2478	 63.03	0	2739989..2740510	-	173	121594914	-	Ajs_2576	-	outer membrane chaperone Skp (OmpH)
2479	 62.75	0	2740510..2742807	-	765	121594915	-	Ajs_2577	-	surface antigen (D15)
2480	 68.06	0	2742853..2744217	-	454	121594916	-	Ajs_2578	-	peptidase RseP
2481	 67.77	0	2744337..2745509	-	390	121594917	-	Ajs_2579	-	1-deoxy-D-xylulose 5-phosphate reductoisomerase
2482	 69.36	0	2745506..2746360	-	284	121594918	-	Ajs_2580	-	phosphatidate cytidylyltransferase
2483	 66.94	0	2746395..2747129	-	244	121594919	-	Ajs_2581	-	undecaprenyl diphosphate synthase
2484	 61.68	-1	2747158..2747718	-	186	121594920	-	Ajs_2582	-	ribosome recycling factor
2485	 66.80	0	2747767..2748489	-	240	121594921	pyrH	Ajs_2583	-	uridylate kinase
2486	 64.44	0	2748547..2749443	-	298	121594922	-	Ajs_2584	-	translation elongation factor Ts (EF-Ts)
2487	 60.96	-1	2749553..2750305	-	250	121594923	-	Ajs_2585	-	SSU ribosomal protein S2P
2488	 71.05	0	2750506..2751852	+	448	121594924	-	Ajs_2586	-	amidase
2489	 73.88	+1	2751904..2753151	+	415	121594925	-	Ajs_2587	-	D-amino-acid dehydrogenase
2490	 75.44	+1	2753452..2754978	+	508	121594926	-	Ajs_2588	-	carbohydrate kinase, YjeF related protein
2491	 66.67	0	2755155..2755328	+	57	121594927	-	Ajs_2589	-	hypothetical protein
2492	 75.33	+1	2755395..2756075	-	226	121594928	-	Ajs_2590	-	hypothetical protein
2493	 70.03	0	2756072..2757082	-	336	121594929	-	Ajs_2591	-	hypothetical protein
2494	 68.27	0	2757098..2757907	-	269	121594930	-	Ajs_2592	-	ABC-type transport system ipermease component
2495	 69.93	0	2758017..2758475	-	152	121594931	-	Ajs_2593	-	MerR family transcriptional regulator
2496	 72.85	+1	2758516..2760537	+	673	121594932	-	Ajs_2594	-	heavy metal translocating P-type ATPase
2497	 72.38	+1	2760534..2760953	+	139	121594933	-	Ajs_2595	-	hypothetical protein
2498	 68.58	0	2761101..2761727	+	208	121594934	-	Ajs_2596	-	hypothetical protein
2499	 70.15	0	2761803..2762204	+	133	121594935	-	Ajs_2597	-	hypothetical protein
2500	 73.56	+1	2762308..2762655	+	115	121594936	-	Ajs_2598	-	hypothetical protein
2501	 73.57	+1	2762652..2764085	+	477	121594937	-	Ajs_2599	-	copper tolerance protein
2502	 69.76	0	2764087..2765475	+	462	121594938	-	Ajs_2600	-	multicopper oxidase, type 3
2503	 62.73	0	2765493..2765975	+	160	121594939	-	Ajs_2601	-	blue (type1) copper domain-containing protein
2504	 68.69	0	2766010..2766504	+	164	121594940	-	Ajs_2602	-	hypothetical protein
2505	 67.15	0	2766501..2766911	+	136	121594941	-	Ajs_2603	-	hypothetical protein
2506	 71.15	0	2766967..2769174	+	735	121594942	-	Ajs_2604	-	heavy metal translocating P-type ATPase
2507	 73.67	+1	2769230..2770243	+	337	121594943	-	Ajs_2605	-	peptidase S58, DmpA
2508	 67.94	0	2770246..2771583	+	445	121594944	-	Ajs_2606	-	TRAP transporter solute receptor TAXI family protein
2509	 67.07	0	2771613..2773838	-	741	121594945	-	Ajs_2607	-	hypothetical protein
2510	 59.94	-1	2773896..2775635	-	579	121594946	-	Ajs_2608	-	putative ABC transporter ATP-binding protein
2511	 68.17	0	2775814..2777547	+	577	121594947	-	Ajs_2609	-	DEAD/DEAH box helicase domain-containing protein
2512	 66.94	0	2777684..2779504	+	606	121594948	-	Ajs_2610	-	peptidase M14, carboxypeptidase A
2513	 64.49	0	2779968..2780519	-	183	121594949	-	Ajs_2611	-	integrase catalytic subunit
2514	 61.39	-1	2781490..2782569	-	359	121594950	-	Ajs_2613	-	integrase catalytic subunit
2515	 64.27	0	2784111..2784569	-	152	121594951	-	Ajs_2614	-	hypothetical protein
2516	 64.63	0	2784562..2785149	-	195	121594952	-	Ajs_2615	-	DNA polymerase beta subunit
2517	 63.29	0	2785296..2786774	-	492	121594953	-	Ajs_2616	-	N-6 DNA methylase
2518	 61.11	-1	2786847..2787404	-	185	121594954	-	Ajs_2617	-	hypothetical protein
2519	 62.88	0	2787465..2789918	-	817	121594955	-	Ajs_2618	-	EcoEI R domain-containing protein
2520	 60.19	-1	2790069..2790593	+	174	121594956	-	Ajs_2619	-	hypothetical protein
2521	 61.21	-1	2791280..2793202	-	640	121594957	-	Ajs_2620	-	PpiC-type peptidyl-prolyl cis-trans isomerase
2522	 54.95	-2	2793352..2793624	-	90	121594958	-	Ajs_2621	-	histone family protein DNA-binding protein
2523	 55.38	-2	2794031..2794615	-	194	121594959	-	Ajs_2622	-	CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase
2524	 60.23	-1	2794646..2796619	-	657	121594960	-	Ajs_2623	-	excinuclease ABC, C subunit
2525	 57.12	-1	2796720..2797421	-	233	121594961	-	Ajs_2624	-	hypothetical protein
66.47	MEAN

4.71	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.